prot_Ecto-sp9_F_contig11085.940.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig11085.940.1
Unique Nameprot_Ecto-sp9_F_contig11085.940.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length384
Homology
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 739 bits (1908), Expect = 2.320e-253
Identity = 381/384 (99.22%), Postives = 383/384 (99.74%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDK EAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEV+KP+FDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ
Sbjct: 1122 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKTEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1505          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 740 bits (1910), Expect = 1.280e-249
Identity = 382/384 (99.48%), Postives = 383/384 (99.74%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAED AEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEV+KPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ
Sbjct: 1121 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDMAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1504          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 504 bits (1298), Expect = 1.460e-161
Identity = 269/385 (69.87%), Postives = 306/385 (79.48%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA-EDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            MCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL       D  + QE AKRVVD+LEY+TL D+T STQIYYDPDPR T+++ED E +E   DI   E DD + DRA PWLLR+EL +E  F K L +  IA+++   +   LH+I SD N++K VLR+RV+DD  D  + +P + E+   ADDVA LK LEKNLL LQL GI  I+KVYM E ++P FD   GF QR  EW+LETDGTNLMA LC   +D RRTVSNDVVEC +V GIEGAR SLL+EFRAVVERDGSYVNYRHL TL+DVMTFRG+LMAITRHGINRVDNGPMLRSSFEETVEILMEAA+FAE+DNLKGVTDNIMLGQ
Sbjct: 1113 MCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRVVDMLEYITLADVTVSTQIYYDPDPRDTIIEEDKECVEAFLDI---ETDDFNADRASPWLLRIELKKEVAFVKGLMIGSIARKITDDYGSALHIISSDDNADKQVLRLRVMDD-DDGEKVDPSSGEEVVRADDVAFLKRLEKNLLVLQLGGIDNINKVYMQEGTRPVFDPDKGF-QRETEWLLETDGTNLMAVLCCPNVDHRRTVSNDVVECLSVFGIEGARMSLLREFRAVVERDGSYVNYRHLGTLVDVMTFRGYLMAITRHGINRVDNGPMLRSSFEETVEILMEAAMFAESDNLKGVTDNIMLGQ 1487          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AD01_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 1.450e-131
Identity = 216/386 (55.96%), Postives = 279/386 (72.28%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRAR-PWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            M GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+      D A   E AK++   LEY TL D+T ST IYYDPDP STVV+ED + +  ++D+      D+DT  AR PWLLR+ELNR  + DK L++ EIA ++   +   L  I +D N++KLVLRIR++ +  DK+     A  +   +D   LK +E N+L +++L G+  + KV+M E  + ++DE  GF    KEWVL+TDGTNL+  +C E ID  RT+SND+VE   VLGIE  R +LL E R V+  DG+YVNYRHL+ L DVMTFRGHLMA+TRHGINRVD+GP++R SFEETVEILM+AA+F++ D L GVT+NIMLGQ
Sbjct:   24 MAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTASTAIYYDPDPTSTVVEEDADFVASYYDVI-----DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQDLSCIYTDDNADKLVLRIRIMSEEEDKVSQNGSA--SVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEEKGFIMV-KEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQ 396          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=2 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9EAE4_9ROSI)

HSP 1 Score: 394 bits (1012), Expect = 1.260e-127
Identity = 206/385 (53.51%), Postives = 280/385 (72.73%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            M G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL   A+     + +E AK V   LEY TL  +T +T+++YDPDP ST+++ED++ ++ ++++ +EE      ++  PWLLR+ELNRE + DK+L + +IA+++   FD  L  I +D N+EKL+LRIR+++D   K E   E+     A+D   LK +E N+L  + L GI  I+KV++      KFDE +G+ +  +EWVL+T+G NL+A +C E +D RRT SN ++E   VLGIE  R SLL E R V+  DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE+D L+GVT+NIMLGQ
Sbjct:  178 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLSPEAS-----KTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE---VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGY-KTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQ 548          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9IBC4_9ROSI)

HSP 1 Score: 394 bits (1012), Expect = 2.400e-127
Identity = 206/385 (53.51%), Postives = 280/385 (72.73%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            M G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL   A+     + +E AK V   LEY TL  +T +T+++YDPDP ST+++ED++ ++ ++++ +EE      ++  PWLLR+ELNRE + DK+L + +IA+++   FD  L  I +D N+EKL+LRIR+++D   K E   E+     A+D   LK +E N+L  + L GI  I+KV++      KFDE +G+ +  +EWVL+T+G NL+A +C E +D RRT SN ++E   VLGIE  R SLL E R V+  DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE+D L+GVT+NIMLGQ
Sbjct:  402 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLSPEAS-----KTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE---VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGY-KTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQ 772          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W9H4_9STRA)

HSP 1 Score: 387 bits (995), Expect = 4.210e-127
Identity = 213/396 (53.79%), Postives = 283/396 (71.46%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA--------EDTAEA--DDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPK-FDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            M GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LT+YL+E  +        +VA+ V  +LEY  LGDIT  T+IYYDPD  STV+ +D E ++ H++  +E +DD    R  PW+LR+ELN+    +K++ + EI +++   +   L VI++D N++ LV+RIR+++D+P  +  E +         ED  E   +D   LK LEKN+L +L+L GI  ++KV++   +K   ++E  GF  +  EWVLETDGTNLM+ L  + ID  RT+SND+VE   VLGIEG RG++L E R V+  DGSYVNYRHL+ L+DVMT  GHLMAI RHGINRVD+GP+LR SFEETV++LM+A+VFAE + LKGVT+NIM+GQ
Sbjct:  200 MAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTVYLDESVSS-----DADVARLVCSMLEYTVLGDITKLTEIYYDPDITSTVIAKDREFVKLHYEFSDETQDD--LRRLSPWVLRVELNQTVFLEKKMQMSEIVQQITNEYGEDLDVIKTDDNADDLVVRIRIVNDMPTHMGGEVDDDGNNIIHDEDDVECGQEDDVFLKRLEKNMLGQLKLRGIPDVNKVFLRAGAKRTIWNEETGFGIKD-EWVLETDGTNLMSVLGVDYIDATRTISNDIVEVFVVLGIEGVRGAILSELRNVISFDGSYVNYRHLACLVDVMTMHGHLMAIDRHGINRVDSGPLLRCSFEETVDMLMDASVFAEEEVLKGVTENIMMGQ 587          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU09_9STRA)

HSP 1 Score: 399 bits (1026), Expect = 1.780e-126
Identity = 214/391 (54.73%), Postives = 287/391 (73.40%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKI-----EAEP-EAEDTAEADDVAMLKHLEKNLLR-LQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            M GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK+ +TP LTIYLEE  +G      Q++AK V  +LEY  LGD+   T+IYYDPD + T+V++D E ++ ++D+ +  E+D    R  PW LR+ELN    FDK++ + EI + V   + G L+VI +D N+++LV+R+R+++DVP  +     +  P ++ED  + DDV  LK LEK++L  L+L GI  + KV+M    +  +D+ +GF  +  EW+LETDGTNLM+ L  + +D  RTV ND+VE   VLGIEG RG++L+E R V+  DGSYVNYRHL+ L+DVMT +GHLMAI RHGINRV++GP+LRSSFEETV++LM+AA +AE + LKGVT+NIMLGQ
Sbjct:  461 MAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKHPKTPGLTIYLEEDVSG-----DQDIAKLVHSLLEYTVLGDVVKLTEIYYDPDIKETIVEKDREFVKDYYDLSDATEED--LRRLSPWCLRIELNPSVFFDKKMKMNEIVREVNNEYGGDLNVIVTDDNADELVVRVRIVNDVPQGMGQVDDDGNPIQSEDVGQEDDV-FLKRLEKSMLSSLKLRGIDHVKKVFMRNAKRTTWDDESGFGVKD-EWILETDGTNLMSVLGVDYVDATRTVCNDIVEVFQVLGIEGVRGAILRELRNVISFDGSYVNYRHLACLVDVMTMQGHLMAIDRHGINRVESGPLLRSSFEETVDMLMDAATYAEEEILKGVTENIMLGQ 842          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CQC3_9LAMI)

HSP 1 Score: 399 bits (1026), Expect = 6.220e-126
Identity = 208/385 (54.03%), Postives = 281/385 (72.99%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            M G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL      A+ ++ +E AK V   LEY TL  +T +T+++YDPDP ST+++ED+E ++ ++++ +EE    D D+  PWLLR+ELNRE + DK+L + +IA+++   FD  L  I +D N+EKL+LRIR+++D   K E   E+     A+D   LK +E N+L  + L GI  I+KV++      +FDEI+GF +   EW+L+T+G NL+A LC   +D +RT SN ++E   VLGIE  R +LL E R V+  DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE D+LKGVT+NIMLGQ
Sbjct:  435 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL-----NAEASKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIEFVKSYYEMPDEE---IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVNRFDEIDGF-KAENEWMLDTEGVNLLAVLCHPDVDSKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLKGVTENIMLGQ 805          
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YZ27_9STRA)

HSP 1 Score: 399 bits (1026), Expect = 1.590e-125
Identity = 216/386 (55.96%), Postives = 280/386 (72.54%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRAR-PWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 384
            M GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+      D A   E AK++   LEY TL D+T+ST IYYDPDP STVV+ED + +  ++D+      D+DT  AR PWLLR+ELNR  + DK L++ EIA ++   +   L  I +D N++KLVLRIR++ +  DK+     A  +   +D   LK +E N+L +++L G+  + KV+M E  + ++DE  GF    KEWVL+TDGTNL+  +C E ID  RT+SND+VE   VLGIE  R +LL E R V+  DG+YVNYRHL+ L DVMTFRGHLMA+TRHGINRVD+GP++R SFEETVEILM+AA+F++ D L GVT+NIMLGQ
Sbjct:  512 MAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTSSTAIYYDPDPTSTVVEEDADFVASYYDVI-----DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQDLSCIYTDDNADKLVLRIRIMSEEEDKVSQSGSA--SVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEDKGFIMV-KEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQ 884          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA-directed2.320e-25399.22RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP... [more]
DNA-directed1.280e-24999.48RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=28... [more]
DNA-directed1.460e-16169.87RNA polymerase subunit n=1 Tax=Tribonema minus Tax... [more]
DNA-directed1.450e-13155.96RNA polymerase n=2 Tax=Aphanomyces astaci TaxID=11... [more]
DNA-directed1.260e-12753.51RNA polymerase (Fragment) n=2 Tax=Gossypium trilob... [more]
DNA-directed2.400e-12753.51RNA polymerase (Fragment) n=1 Tax=Gossypium harkne... [more]
DNA-directed4.210e-12753.79RNA polymerase (Fragment) n=1 Tax=Eucampia antarct... [more]
DNA-directed1.780e-12654.73RNA polymerase n=1 Tax=Grammatophora oceanica TaxI... [more]
DNA-directed6.220e-12654.03RNA polymerase (Fragment) n=1 Tax=Genlisea aurea T... [more]
DNA-directed1.590e-12555.96RNA polymerase n=1 Tax=Aphanomyces invadans TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.390coord: 349..384
e-value: 2.7E-11
score: 45.1
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 1..384
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..384
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..384
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 1..346
e-value: 3.6E-58
score: 197.4
IPR038593RNA polymerase Rpb1, domain 7 superfamilyGENE3D3.30.1360.140coord: 84..226
e-value: 1.8E-37
score: 130.2
IPR007073RNA polymerase Rpb1, domain 7PFAMPF04990RNA_pol_Rpb1_7coord: 85..221
e-value: 9.1E-38
score: 129.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11085contigEcto-sp9_F_contig11085:293..4149 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11085.940.1mRNA_Ecto-sp9_F_contig11085.940.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig11085 293..4176 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig11085.940.1 ID=prot_Ecto-sp9_F_contig11085.940.1|Name=mRNA_Ecto-sp9_F_contig11085.940.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=384bp
MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVR
TPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPD
PRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKR
LDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA
EDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVSKPKFDEINGFA
QRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSL
LKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPML
RSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR038593RNA_pol_Rpb1_7_sf
IPR007073RNA_pol_Rpb1_7