mRNA_Ecto-sp9_F_contig11085.940.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE) HSP 1 Score: 751 bits (1938), Expect = 1.090e-257 Identity = 386/393 (98.22%), Postives = 391/393 (99.49%), Query Frame = 1
Query: 1 INRQVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
++ +VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDK EAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEV+KP+FDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ
Sbjct: 1113 MSSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKTEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPRFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1505
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI) HSP 1 Score: 751 bits (1940), Expect = 6.770e-254 Identity = 387/393 (98.47%), Postives = 391/393 (99.49%), Query Frame = 1
Query: 1 INRQVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
++ +VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAED AEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEV+KPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ
Sbjct: 1112 MSSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDMAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1504
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA) HSP 1 Score: 510 bits (1314), Expect = 1.030e-163 Identity = 272/394 (69.04%), Postives = 312/394 (79.19%), Query Frame = 1
Query: 1 INRQVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA-EDTAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
++ +V GEMCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL D + QE AKRVVD+LEY+TL D+T STQIYYDPDPR T+++ED E +E DI E DD + DRA PWLLR+EL +E F K L + IA+++ + LH+I SD N++K VLR+RV+DD D + +P + E+ ADDVA LK LEKNLL LQL GI I+KVYM E ++P FD GF QR EW+LETDGTNLMA LC +D RRTVSNDVVEC +V GIEGAR SLL+EFRAVVERDGSYVNYRHL TL+DVMTFRG+LMAITRHGINRVDNGPMLRSSFEETVEILMEAA+FAE+DNLKGVTDNIMLGQ
Sbjct: 1104 MSARVSAGEMCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRVVDMLEYITLADVTVSTQIYYDPDPRDTIIEEDKECVEAFLDI---ETDDFNADRASPWLLRIELKKEVAFVKGLMIGSIARKITDDYGSALHIISSDDNADKQVLRLRVMDD-DDGEKVDPSSGEEVVRADDVAFLKRLEKNLLVLQLGGIDNINKVYMQEGTRPVFDPDKGF-QRETEWLLETDGTNLMAVLCCPNVDHRRTVSNDVVECLSVFGIEGARMSLLREFRAVVERDGSYVNYRHLGTLVDVMTFRGYLMAITRHGINRVDNGPMLRSSFEETVEILMEAAMFAESDNLKGVTDNIMLGQ 1487
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AD01_9STRA) HSP 1 Score: 404 bits (1039), Expect = 1.570e-133 Identity = 219/391 (56.01%), Postives = 282/391 (72.12%), Query Frame = 1
Query: 13 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRAR-PWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
V GEM GV+AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIIN+AK+V+TPS+ IYL+ D A E AK++ LEY TL D+T ST IYYDPDP STVV+ED + + ++D+ D+DT AR PWLLR+ELNR + DK L++ EIA ++ + L I +D N++KLVLRIR++ + DK+ A + +D LK +E N+L +++L G+ + KV+M E + ++DE GF KEWVL+TDGTNL+ +C E ID RT+SND+VE VLGIE R +LL E R V+ DG+YVNYRHL+ L DVMTFRGHLMA+TRHGINRVD+GP++R SFEETVEILM+AA+F++ D L GVT+NIMLGQ
Sbjct: 19 VAAGEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLK-----PDCAHDAEKAKQIQSTLEYTTLMDVTASTAIYYDPDPTSTVVEEDADFVASYYDVI-----DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQDLSCIYTDDNADKLVLRIRIMSEEEDKVSQNGSA--SVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEEKGFIMV-KEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQ 396
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=2 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9EAE4_9ROSI) HSP 1 Score: 402 bits (1034), Expect = 9.000e-131 Identity = 210/390 (53.85%), Postives = 284/390 (72.82%), Query Frame = 1
Query: 13 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
V PGEM G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL A+ + +E AK V LEY TL +T +T+++YDPDP ST+++ED++ ++ ++++ +EE ++ PWLLR+ELNRE + DK+L + +IA+++ FD L I +D N+EKL+LRIR+++D K E E+ A+D LK +E N+L + L GI I+KV++ KFDE +G+ + +EWVL+T+G NL+A +C E +D RRT SN ++E VLGIE R SLL E R V+ DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE+D L+GVT+NIMLGQ
Sbjct: 173 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLSPEAS-----KTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE---VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGY-KTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQ 548
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9IBC4_9ROSI) HSP 1 Score: 402 bits (1034), Expect = 1.730e-130 Identity = 210/390 (53.85%), Postives = 284/390 (72.82%), Query Frame = 1
Query: 13 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
V PGEM G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL A+ + +E AK V LEY TL +T +T+++YDPDP ST+++ED++ ++ ++++ +EE ++ PWLLR+ELNRE + DK+L + +IA+++ FD L I +D N+EKL+LRIR+++D K E E+ A+D LK +E N+L + L GI I+KV++ KFDE +G+ + +EWVL+T+G NL+A +C E +D RRT SN ++E VLGIE R SLL E R V+ DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE+D L+GVT+NIMLGQ
Sbjct: 397 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLSPEAS-----KTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE---VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGY-KTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQ 772
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W9H4_9STRA) HSP 1 Score: 396 bits (1018), Expect = 2.020e-130 Identity = 217/402 (53.98%), Postives = 288/402 (71.64%), Query Frame = 1
Query: 10 QVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEA--------EDTAEA--DDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPK-FDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LT+YL+E + +VA+ V +LEY LGDIT T+IYYDPD STV+ +D E ++ H++ +E +DD R PW+LR+ELN+ +K++ + EI +++ + L VI++D N++ LV+RIR+++D+P + E + ED E +D LK LEKN+L +L+L GI ++KV++ +K ++E GF + EWVLETDGTNLM+ L + ID RT+SND+VE VLGIEG RG++L E R V+ DGSYVNYRHL+ L+DVMT GHLMAI RHGINRVD+GP+LR SFEETV++LM+A+VFAE + LKGVT+NIM+GQ
Sbjct: 194 KVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTVYLDESVSS-----DADVARLVCSMLEYTVLGDITKLTEIYYDPDITSTVIAKDREFVKLHYEFSDETQDD--LRRLSPWVLRVELNQTVFLEKKMQMSEIVQQITNEYGEDLDVIKTDDNADDLVVRIRIVNDMPTHMGGEVDDDGNNIIHDEDDVECGQEDDVFLKRLEKNMLGQLKLRGIPDVNKVFLRAGAKRTIWNEETGFGIKD-EWVLETDGTNLMSVLGVDYIDATRTISNDIVEVFVVLGIEGVRGAILSELRNVISFDGSYVNYRHLACLVDVMTMHGHLMAIDRHGINRVDSGPLLRCSFEETVDMLMDASVFAEEEVLKGVTENIMMGQ 587
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU09_9STRA) HSP 1 Score: 408 bits (1049), Expect = 1.040e-129 Identity = 218/397 (54.91%), Postives = 292/397 (73.55%), Query Frame = 1
Query: 10 QVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKI-----EAEP-EAEDTAEADDVAMLKHLEKNLLR-LQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK+ +TP LTIYLEE +G Q++AK V +LEY LGD+ T+IYYDPD + T+V++D E ++ ++D+ + E+D R PW LR+ELN FDK++ + EI + V + G L+VI +D N+++LV+R+R+++DVP + + P ++ED + DDV LK LEK++L L+L GI + KV+M + +D+ +GF + EW+LETDGTNLM+ L + +D RTV ND+VE VLGIEG RG++L+E R V+ DGSYVNYRHL+ L+DVMT +GHLMAI RHGINRV++GP+LRSSFEETV++LM+AA +AE + LKGVT+NIMLGQ
Sbjct: 455 KVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKHPKTPGLTIYLEEDVSG-----DQDIAKLVHSLLEYTVLGDVVKLTEIYYDPDIKETIVEKDREFVKDYYDLSDATEED--LRRLSPWCLRIELNPSVFFDKKMKMNEIVREVNNEYGGDLNVIVTDDNADELVVRVRIVNDVPQGMGQVDDDGNPIQSEDVGQEDDV-FLKRLEKSMLSSLKLRGIDHVKKVFMRNAKRTTWDDESGFGVKD-EWILETDGTNLMSVLGVDYVDATRTVCNDIVEVFQVLGIEGVRGAILRELRNVISFDGSYVNYRHLACLVDVMTMQGHLMAIDRHGINRVESGPLLRSSFEETVDMLMDAATYAEEEILKGVTENIMLGQ 842
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CQC3_9LAMI) HSP 1 Score: 408 bits (1048), Expect = 5.270e-129 Identity = 212/390 (54.36%), Postives = 285/390 (73.08%), Query Frame = 1
Query: 13 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
V PGEM G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL A+ ++ +E AK V LEY TL +T +T+++YDPDP ST+++ED+E ++ ++++ +EE D D+ PWLLR+ELNRE + DK+L + +IA+++ FD L I +D N+EKL+LRIR+++D K E E+ A+D LK +E N+L + L GI I+KV++ +FDEI+GF + EW+L+T+G NL+A LC +D +RT SN ++E VLGIE R +LL E R V+ DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE D+LKGVT+NIMLGQ
Sbjct: 430 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL-----NAEASKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIEFVKSYYEMPDEE---IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVNRFDEIDGF-KAENEWMLDTEGVNLLAVLCHPDVDSKRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLKGVTENIMLGQ 805
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5B2K8_9ASTE) HSP 1 Score: 395 bits (1015), Expect = 1.350e-127 Identity = 209/390 (53.59%), Postives = 281/390 (72.05%), Query Frame = 1
Query: 13 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEEDDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRIRVLDDVPDKIEAEPEAEDTAEADDVAMLKHLEKNLL-RLQLSGIAGISKVYMSEVSKPKFDEINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEFRAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEAAVFAEADNLKGVTDNIMLGQ 1179
V PGEM G +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL++YL+ + + +E AK V LEY TL +T +T+++YDPDP ST+++EDV+ ++ ++++ +EE ++ PWLLR+ELNRE + DK+L + +IA+++ FD L I +D N+EKL+LRIR+++D K E E+ A+D LK +E N+L + L GI I+KV++ KF+E GF + EW+L+T+G NL+A +C E +D RRT SN ++E VLGIE R SLL E R V+ DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++AAV+AE D L+GVT+NIMLGQ
Sbjct: 78 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK-----PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE---IAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDES-----AEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFEENEGF-RPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQ 453 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11085.940.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11085.940.1 >prot_Ecto-sp9_F_contig11085.940.1 ID=prot_Ecto-sp9_F_contig11085.940.1|Name=mRNA_Ecto-sp9_F_contig11085.940.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=384bp MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRback to top mRNA from alignment at Ecto-sp9_F_contig11085:293..4176- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11085.940.1 ID=mRNA_Ecto-sp9_F_contig11085.940.1|Name=mRNA_Ecto-sp9_F_contig11085.940.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3884bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11085:293..4176- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11085:293..4176- >mRNA_Ecto-sp9_F_contig11085.940.1 ID=mRNA_Ecto-sp9_F_contig11085.940.1|Name=mRNA_Ecto-sp9_F_contig11085.940.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2304bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11085:293..4176- (Ectocarpus species9 EcSCA_722f female)back to top |