prot_Ecto-sp9_F_contig11082.939.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig11082.939.1
Unique Nameprot_Ecto-sp9_F_contig11082.939.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length85
Homology
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.170e-32
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESAD--NVVDPSTKVYR 84
            LTT PGNP++ CRV+NK+AF+ELRS+EE    L+LNGIPFMGQ+LKIGRP+KY GP   +STWQ LTGQ++ +  +VVDPSTK+YR
Sbjct:  236 LTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYR 321          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCU5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.920e-30
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 0
Query:    6 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR 84
            GNP+V+ R+N+++AFVE RS EE T ALNLNG+PFMG +LKIGRPSKY GPA+ + TWQ LTG+     VVDPSTK+YR
Sbjct:   85 GNPIVSTRINSRFAFVEFRSVEEATSALNLNGVPFMGTLLKIGRPSKYVGPASQAVTWQELTGERPDPQVVDPSTKLYR 163          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKM1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.200e-28
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 0
Query:    6 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR 84
            GNPV + R+N+++AFVE R+ EECT ALNLN IPFMG  LKIGRP+KY GP + + TWQ LTGQ      VDPSTK+YR
Sbjct:   82 GNPVASTRINSRFAFVEFRTVEECTSALNLNAIPFMGMTLKIGRPAKYAGPPSTALTWQELTGQPKQAEAVDPSTKLYR 160          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK)

HSP 1 Score: 111 bits (277), Expect = 3.700e-27
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    6 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 84
            GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GP TP+ TWQ+LTGQ    +     VDP TK+YR
Sbjct:   91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK)

HSP 1 Score: 111 bits (277), Expect = 3.700e-27
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    6 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 84
            GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GP TP+ TWQ+LTGQ    +     VDP TK+YR
Sbjct:   91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 111 bits (277), Expect = 9.900e-27
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    6 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 84
            GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GP TP+ TWQ+LTGQ    +     VDP TK+YR
Sbjct:   91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.800e-25
Identity = 54/96 (56.25%), Postives = 64/96 (66.67%), Query Frame = 0
Query:    1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQ-ESADNVV-----------DPSTKVYR 84
            L T PGNP+V CRV+NK+AF+ELRS +E    L+LN IPFMG  LKIGRPSKY+GP    +TWQ LTGQ E A   +           DP+TKVYR
Sbjct:   77 LNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYR 172          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI96_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.800e-24
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 0
Query:   14 VNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNV-VDPSTKVYR 84
            ++NK+AF+E+RS  E    L++NGIPFMG MLKIGRP+KYQG    +STWQ+LTGQ   D   VDP+TKVYR
Sbjct:    7 LSNKFAFIEMRSIAETNNCLSINGIPFMGNMLKIGRPTKYQGAQVQASTWQQLTGQNGTDGPSVDPTTKVYR 78          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.850e-22
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 0
Query:    1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPS 79
            L+  PGNP+VTCR + K+AF+ELR++EE   ALNLN IP++G  L++GRPSKY GP TP   W+ +  +  +  +  PS
Sbjct:   51 LSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPS 129          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH23_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.670e-21
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 0
Query:    8 PVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQE-SADNVVDPSTK 81
            PV   RVN K+AF+E R +E   KALN+NG+PF+G +LK+ RPSKY+GP  P+ TWQ LTGQ    D V+D S +
Sbjct:   12 PVTVSRVNQKFAFIECRDAEMANKALNMNGVPFLGAILKVSRPSKYEGPMIPARTWQELTGQSLPQDAVMDSSAE 86          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical1.170e-3266.28protein n=2 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical4.920e-3065.82protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Hypothetical3.200e-2863.29protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical3.700e-2757.83protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical3.700e-2757.83protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical9.900e-2757.83protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized2.800e-2556.25protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical7.800e-2461.11protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Hypothetical2.850e-2249.37protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical1.670e-2154.67protein (Fragment) n=1 Tax=Grammatophora oceanica ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..77
e-value: 1.2E-13
score: 53.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 8..45
e-value: 1.9E-4
score: 21.2
NoneNo IPR availablePANTHERPTHR23139:SF9SPLICING FACTOR U2AF 65 KDA SUBUNITcoord: 2..71
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 2..71
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 11..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11082contigEcto-sp9_F_contig11082:155..902 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11082.939.1mRNA_Ecto-sp9_F_contig11082.939.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig11082 155..902 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig11082.939.1 ID=prot_Ecto-sp9_F_contig11082.939.1|Name=mRNA_Ecto-sp9_F_contig11082.939.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRP
SKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf