mRNA_Ecto-sp9_F_contig11082.939.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11082.939.1
Unique NamemRNA_Ecto-sp9_F_contig11082.939.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.170e-32
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 1
Query:    1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESAD--NVVDPSTKVYR 252
            LTT PGNP++ CRV+NK+AF+ELRS+EE    L+LNGIPFMGQ+LKIGRP+KY GP   +STWQ LTGQ++ +  +VVDPSTK+YR
Sbjct:  236 LTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYR 321          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCU5_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.920e-30
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR 252
            GNP+V+ R+N+++AFVE RS EE T ALNLNG+PFMG +LKIGRPSKY GPA+ + TWQ LTG+     VVDPSTK+YR
Sbjct:   85 GNPIVSTRINSRFAFVEFRSVEEATSALNLNGVPFMGTLLKIGRPSKYVGPASQAVTWQELTGERPDPQVVDPSTKLYR 163          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKM1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.200e-28
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR 252
            GNPV + R+N+++AFVE R+ EECT ALNLN IPFMG  LKIGRP+KY GP + + TWQ LTGQ      VDPSTK+YR
Sbjct:   82 GNPVASTRINSRFAFVEFRTVEECTSALNLNAIPFMGMTLKIGRPAKYAGPPSTALTWQELTGQPKQAEAVDPSTKLYR 160          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK)

HSP 1 Score: 111 bits (277), Expect = 3.700e-27
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 252
            GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GP TP+ TWQ+LTGQ    +     VDP TK+YR
Sbjct:   91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK)

HSP 1 Score: 111 bits (277), Expect = 3.700e-27
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 252
            GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GP TP+ TWQ+LTGQ    +     VDP TK+YR
Sbjct:   91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK)

HSP 1 Score: 111 bits (277), Expect = 9.900e-27
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 252
            GNP+++CR++ K+AF+ELR++EE    LNLNGIPFMG  LK+GRP+KY GP TP+ TWQ+LTGQ    +     VDP TK+YR
Sbjct:   91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.800e-25
Identity = 54/96 (56.25%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQ-ESADNVV-----------DPSTKVYR 252
            L T PGNP+V CRV+NK+AF+ELRS +E    L+LN IPFMG  LKIGRPSKY+GP    +TWQ LTGQ E A   +           DP+TKVYR
Sbjct:   77 LNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYR 172          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI96_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 7.800e-24
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   40 VNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNV-VDPSTKVYR 252
            ++NK+AF+E+RS  E    L++NGIPFMG MLKIGRP+KYQG    +STWQ+LTGQ   D   VDP+TKVYR
Sbjct:    7 LSNKFAFIEMRSIAETNNCLSINGIPFMGNMLKIGRPTKYQGAQVQASTWQQLTGQNGTDGPSVDPTTKVYR 78          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.850e-22
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPS 237
            L+  PGNP+VTCR + K+AF+ELR++EE   ALNLN IP++G  L++GRPSKY GP TP   W+ +  +  +  +  PS
Sbjct:   51 LSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPS 129          
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH23_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.670e-21
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   22 PVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQE-SADNVVDPSTK 243
            PV   RVN K+AF+E R +E   KALN+NG+PF+G +LK+ RPSKY+GP  P+ TWQ LTGQ    D V+D S +
Sbjct:   12 PVTVSRVNQKFAFIECRDAEMANKALNMNGVPFLGAILKVSRPSKYEGPMIPARTWQELTGQSLPQDAVMDSSAE 86          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical1.170e-3266.28protein n=2 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical4.920e-3065.82protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Hypothetical3.200e-2863.29protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Hypothetical3.700e-2757.83protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical3.700e-2757.83protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical9.900e-2757.83protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized2.800e-2556.25protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical7.800e-2461.11protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Hypothetical2.850e-2249.37protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical1.670e-2154.67protein (Fragment) n=1 Tax=Grammatophora oceanica ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11082contigEcto-sp9_F_contig11082:155..902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3.1e-16
Seed eggNOG ortholog44056.XP_009040785.1
KEGG koko:K12818,ko:K12837,ko:K16487
KEGG Pathwayko03040,map03040
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.2400446-CDS-Ecto-sp9_F_contig11082:154..2831622928348.2400446-CDS-Ecto-sp9_F_contig11082:154..283Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11082 155..283 +
1692277840.738666-CDS-Ecto-sp9_F_contig11082:154..2831692277840.738666-CDS-Ecto-sp9_F_contig11082:154..283Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11082 155..283 +
1622928348.2578523-CDS-Ecto-sp9_F_contig11082:776..9021622928348.2578523-CDS-Ecto-sp9_F_contig11082:776..902Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11082 777..902 +
1692277840.7626758-CDS-Ecto-sp9_F_contig11082:776..9021692277840.7626758-CDS-Ecto-sp9_F_contig11082:776..902Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11082 777..902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11082.939.1prot_Ecto-sp9_F_contig11082.939.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11082 155..902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11082.939.1

>prot_Ecto-sp9_F_contig11082.939.1 ID=prot_Ecto-sp9_F_contig11082.939.1|Name=mRNA_Ecto-sp9_F_contig11082.939.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRP
SKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR*
back to top

mRNA from alignment at Ecto-sp9_F_contig11082:155..902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11082.939.1 ID=mRNA_Ecto-sp9_F_contig11082.939.1|Name=mRNA_Ecto-sp9_F_contig11082.939.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11082:155..902+ (Ectocarpus species9 EcSCA_722f female)
CTCACAACCGGACCCGGCAACCCTGTGGTGACTTGCCGCGTCAACAACAA GTACGCCTTCGTGGAACTCCGGTCGTCTGAGGAGTGCACCAAGGCCCTCA ACCTCAACGGCATCCCCTTCATGGGACAGGTGAAAGAACGCCCCATCGCT TGTTGACTGATGCCTCTGGCTGTTCATGTCGATGGTGTATGTGTCTGCCA GGGGGGGCGGAGGGGAAGGGACGCAGACTGCATGTCCCCTCTGGGGAAAT CAAGGCCGTGCTCTCCATGTGCTGATTTTGACGAGTCTCCCGCAGCAAAT AGGCCTTTTCACATTCTGCTTTTTTATTCCTTTGCTAATTTATTTGCTCT TTTTGACGTGAGCCTATGCTTCAAACGGTGAATTCTGCTGCCTTTTTGCG GTGGTGACGCTCCGATTTTGTTCTCCTTTTTCTGTGGGAGAATATGCTCA AAATGTCACTTTTATGCTATCATCGTCCAAAAAAATGGCCCACAGAGGTC CTACCGGAATCCTTTGCCTTGGCACCCAGAACTGCTACGGAACTTTCGCC TCGCCCCCCCTCCCCTTTCACGTTATACAACCCCAAGCCTACTGCTTGTG CCCTTTTTTGCCCCCCTCGCAGATGCTCAAGATCGGCCGCCCCTCGAAGT ACCAGGGTCCCGCGACCCCATCGTCCACTTGGCAGCGGCTGACCGGCCAG GAGTCAGCTGACAACGTCGTCGACCCCTCAACGAAGGTCTACCGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11082:155..902+

>mRNA_Ecto-sp9_F_contig11082.939.1 ID=mRNA_Ecto-sp9_F_contig11082.939.1|Name=mRNA_Ecto-sp9_F_contig11082.939.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11082:155..902+ (Ectocarpus species9 EcSCA_722f female)
CTCACAACCGGACCCGGCAACCCTGTGGTGACTTGCCGCGTCAACAACAA
GTACGCCTTCGTGGAACTCCGGTCGTCTGAGGAGTGCACCAAGGCCCTCA
ACCTCAACGGCATCCCCTTCATGGGACAGCTCACAACCGGACCCGGCAAC
CCTGTGGTGACTTGCCGCGTCAACAACAAGTACGCCTTCGTGGAACTCCG
GTCGTCTGAGGAGTGCACCAAGGCCCTCAACCTCAACGGCATCCCCTTCA
TGGGACAGATGCTCAAGATCGGCCGCCCCTCGAAGTACCAGGGTCCCGCG
ACCCCATCGTCCACTTGGCAGCGGCTGACCGGCCAGGAGTCAGCTGACAA
CGTCGTCGACCCCTCAACGAAGGTCTACCGGTGAATGCTCAAGATCGGCC
GCCCCTCGAAGTACCAGGGTCCCGCGACCCCATCGTCCACTTGGCAGCGG
CTGACCGGCCAGGAGTCAGCTGACAACGTCGTCGACCCCTCAACGAAGGT
CTACCGGTGA
back to top