mRNA_Ecto-sp9_F_contig11082.939.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.170e-32 Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 1
Query: 1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESAD--NVVDPSTKVYR 252
LTT PGNP++ CRV+NK+AF+ELRS+EE L+LNGIPFMGQ+LKIGRP+KY GP +STWQ LTGQ++ + +VVDPSTK+YR
Sbjct: 236 LTTAPGNPIIGCRVSNKFAFIELRSAEETNNCLSLNGIPFMGQLLKIGRPTKYCGPVIQASTWQALTGQQAPEGASVVDPSTKLYR 321
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCU5_9STRA) HSP 1 Score: 118 bits (296), Expect = 4.920e-30 Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR 252
GNP+V+ R+N+++AFVE RS EE T ALNLNG+PFMG +LKIGRPSKY GPA+ + TWQ LTG+ VVDPSTK+YR
Sbjct: 85 GNPIVSTRINSRFAFVEFRSVEEATSALNLNGVPFMGTLLKIGRPSKYVGPASQAVTWQELTGERPDPQVVDPSTKLYR 163
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKM1_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.200e-28 Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPSTKVYR 252
GNPV + R+N+++AFVE R+ EECT ALNLN IPFMG LKIGRP+KY GP + + TWQ LTGQ VDPSTK+YR
Sbjct: 82 GNPVASTRINSRFAFVEFRTVEECTSALNLNAIPFMGMTLKIGRPAKYAGPPSTALTWQELTGQPKQAEAVDPSTKLYR 160
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTW3_HETAK) HSP 1 Score: 111 bits (277), Expect = 3.700e-27 Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 252
GNP+++CR++ K+AF+ELR++EE LNLNGIPFMG LK+GRP+KY GP TP+ TWQ+LTGQ + VDP TK+YR
Sbjct: 91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6X1_HETAK) HSP 1 Score: 111 bits (277), Expect = 3.700e-27 Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 252
GNP+++CR++ K+AF+ELR++EE LNLNGIPFMG LK+GRP+KY GP TP+ TWQ+LTGQ + VDP TK+YR
Sbjct: 91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6W7_HETAK) HSP 1 Score: 111 bits (277), Expect = 9.900e-27 Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 16 GNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADN----VVDPSTKVYR 252
GNP+++CR++ K+AF+ELR++EE LNLNGIPFMG LK+GRP+KY GP TP+ TWQ+LTGQ + VDP TK+YR
Sbjct: 91 GNPIMSCRMSAKFAFIELRTAEEANNCLNLNGIPFMGYYLKVGRPTKYAGPITPAKTWQQLTGQAPPADPTAVAVDPQTKIYR 173
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK3_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.800e-25 Identity = 54/96 (56.25%), Postives = 64/96 (66.67%), Query Frame = 1
Query: 1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQ-ESADNVV-----------DPSTKVYR 252
L T PGNP+V CRV+NK+AF+ELRS +E L+LN IPFMG LKIGRPSKY+GP +TWQ LTGQ E A + DP+TKVYR
Sbjct: 77 LNTAPGNPIVQCRVSNKFAFIELRSVDETNNCLSLNQIPFMGTPLKIGRPSKYRGPPVNCTTWQALTGQPELAGGTMMPGAGGSMSGLDPATKVYR 172
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI96_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 7.800e-24 Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 40 VNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNV-VDPSTKVYR 252
++NK+AF+E+RS E L++NGIPFMG MLKIGRP+KYQG +STWQ+LTGQ D VDP+TKVYR
Sbjct: 7 LSNKFAFIEMRSIAETNNCLSINGIPFMGNMLKIGRPTKYQGAQVQASTWQQLTGQNGTDGPSVDPTTKVYR 78
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.850e-22 Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQESADNVVDPS 237
L+ PGNP+VTCR + K+AF+ELR++EE ALNLN IP++G L++GRPSKY GP TP W+ + + + + PS
Sbjct: 51 LSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPS 129
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YH23_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.670e-21 Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 22 PVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPSKYQGPATPSSTWQRLTGQE-SADNVVDPSTK 243
PV RVN K+AF+E R +E KALN+NG+PF+G +LK+ RPSKY+GP P+ TWQ LTGQ D V+D S +
Sbjct: 12 PVTVSRVNQKFAFIECRDAEMANKALNMNGVPFLGAILKVSRPSKYEGPMIPARTWQELTGQSLPQDAVMDSSAE 86 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11082.939.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11082.939.1 >prot_Ecto-sp9_F_contig11082.939.1 ID=prot_Ecto-sp9_F_contig11082.939.1|Name=mRNA_Ecto-sp9_F_contig11082.939.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp LTTGPGNPVVTCRVNNKYAFVELRSSEECTKALNLNGIPFMGQMLKIGRPback to top mRNA from alignment at Ecto-sp9_F_contig11082:155..902+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11082.939.1 ID=mRNA_Ecto-sp9_F_contig11082.939.1|Name=mRNA_Ecto-sp9_F_contig11082.939.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11082:155..902+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11082:155..902+ >mRNA_Ecto-sp9_F_contig11082.939.1 ID=mRNA_Ecto-sp9_F_contig11082.939.1|Name=mRNA_Ecto-sp9_F_contig11082.939.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11082:155..902+ (Ectocarpus species9 EcSCA_722f female)back to top |