prot_Ecto-sp9_F_contig10987.856.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig10987.856.1
Unique Name	prot_Ecto-sp9_F_contig10987.856.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	71

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.150e-27
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHI 61
            TYALIGAAA LGGMARMTISLTVI+LEATGDMQYVLPLMLTLMAARW GNVFNEGLYD+HI
Sbjct:  421 TYALIGAAAALGGMARMTISLTVILLEATGDMQYVLPLMLTLMAARWTGNVFNEGLYDIHI 481

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 110 bits (275), Expect = 1.350e-26
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 62
            TYALIGAAA LGGMARMTISLTVI+LEATGDMQYVLPLMLTLMAAR+ GNVFNEGLYD+HIH
Sbjct:  589 TYALIGAAAVLGGMARMTISLTVILLEATGDMQYVLPLMLTLMAARFTGNVFNEGLYDIHIH 650

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVT8_CAFRO)

HSP 1 Score: 103 bits (258), Expect = 2.690e-24
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 62
            TY+LIGAAA LGGMARMTISL VI++E TGD+QY LPLMLTL+AARW GNVFNEGLYD+HIH
Sbjct:  615 TYSLIGAAAMLGGMARMTISLAVILIECTGDLQYGLPLMLTLLAARWTGNVFNEGLYDIHIH 676

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=2 Tax=Sar TaxID=2698737 RepID=A0A813D0R8_9DINO)

HSP 1 Score: 103 bits (258), Expect = 2.700e-24
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 62
            TY+LIGAAA LGGMARMTISL VI++E TGD+QY LPLMLTL+AARW GNVFNEGLYD+HIH
Sbjct: 1121 TYSLIGAAAMLGGMARMTISLAVILIECTGDLQYGLPLMLTLLAARWTGNVFNEGLYDIHIH 1182

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.790e-24
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 62
            TYAL+GAAA LGGMARMTISLTVI+LEATGDMQYV+PLM+TLMAARWVGNVF   LY +HIH
Sbjct:  351 TYALMGAAAVLGGMARMTISLTVILLEATGDMQYVVPLMITLMAARWVGNVFTPSLYHIHIH 412

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Y3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.810e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query:    8 AACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 62
            AA LGGMARMTISLTVIILEATGDMQYVLPLMLTLM ARWVGN+FNEGLYD+HIH
Sbjct:  580 AAVLGGMARMTISLTVIILEATGDMQYVLPLMLTLMTARWVGNIFNEGLYDIHIH 634

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9F8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.830e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMH 60
            TYAL+GAAA LGGMARMTISLTVI+LEATGDMQYV+PLM+TLMAARWVGN+F E LYD+H
Sbjct:  674 TYALVGAAAVLGGMARMTISLTVILLEATGDMQYVVPLMITLMAARWVGNLFGESLYDIH 733

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QV50_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 9.270e-24
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIHGNKVRGGW 70
            TY+LIGAAA LGGMARMTISLTVI++EATGD+QY LP+M+TLM ARW+G  FNEGLYD+HIH N    GW
Sbjct:  483 TYSLIGAAAVLGGMARMTISLTVILIEATGDIQYGLPIMMTLMTARWMGGCFNEGLYDIHIHMN----GW 548

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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFY8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.730e-23
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIHGNKV 66
            TYAL+GAAA LGGMARMTISL VI+LEATG++  +LPLML LMAARWVGNVFNEGLYD+HIH  K+
Sbjct:  525 TYALVGAAAGLGGMARMTISLCVILLEATGNISNLLPLMLALMAARWVGNVFNEGLYDVHIHLKKM 590

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYM1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.360e-23
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 0

Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIHGNKV 66
            TY+L+GAAA LGG+ RMTISLT+I+LEATGD+QY LPLM+TLM+ARWVGN  ++GLYD+HIHG  +
Sbjct:  506 TYSLVGAAAMLGGVTRMTISLTIILLEATGDLQYALPLMMTLMSARWVGNWLSDGLYDVHIHGRGI 571

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Chloride	5.150e-27	93.44	channel protein n=1 Tax=Tribonema minus TaxID=3033...	[more]
Chloride	1.350e-26	91.94	channel protein n=2 Tax=Fistulifera solaris TaxID=...	[more]
Chloride	2.690e-24	82.26	channel protein n=4 Tax=Cafeteria roenbergensis Ta...	[more]
Chloride	2.700e-24	82.26	channel protein n=2 Tax=Sar TaxID=2698737 RepID=A0...	[more]
Chloride	4.790e-24	83.87	channel protein n=1 Tax=Fibrocapsa japonica TaxID=...	[more]
Chloride	6.810e-24	92.73	channel protein n=1 Tax=Pinguiococcus pyrenoidosus...	[more]
Chloride	6.830e-24	85.00	channel protein n=2 Tax=Monodopsidaceae TaxID=4250...	[more]
Chloride	9.270e-24	74.29	channel protein n=1 Tax=Spongospora subterranea Ta...	[more]
Chloride	1.730e-23	78.79	channel protein n=1 Tax=Pelagomonas calceolata Tax...	[more]
Chloride	2.360e-23	71.21	channel protein n=1 Tax=Achlya hypogyna TaxID=1202...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014743	Chloride channel, core	GENE3D	1.10.3080.10		coord: 1..67 e-value: 1.6E-22 score: 82.0
IPR014743	Chloride channel, core	SUPERFAMILY	81340	Clc chloride channel	coord: 1..65
IPR001807	Chloride channel, voltage gated	PFAM	PF00654	Voltage_CLC	coord: 1..50 e-value: 1.2E-14 score: 54.3
None	No IPR available	PANTHER	PTHR11689	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	coord: 1..65
None	No IPR available	PANTHER	PTHR11689:SF92	H(+)/CL(-) EXCHANGE TRANSPORTER 7	coord: 1..65
None	No IPR available	TMHMM	TMhelix		coord: 4..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10987	contig	Ecto-sp9_F_contig10987:488..1169 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10987.856.1	mRNA_Ecto-sp9_F_contig10987.856.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig10987 488..1169 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig10987.856.1 ID=prot_Ecto-sp9_F_contig10987.856.1|Name=mRNA_Ecto-sp9_F_contig10987.856.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=71bp
TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGN
VFNEGLYDMHIHGNKVRGGW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014743	Cl-channel_core
IPR001807	Cl-channel_volt-gated