prot_Ecto-sp9_F_contig1098.850.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1098.850.1
Unique Nameprot_Ecto-sp9_F_contig1098.850.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length115
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1098.850.1 vs.
Match: PTIF2, (plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 4.000e-69
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 
Query:    1 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGR 115
            MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGR
Sbjct:    1 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGR 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1098.850.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PTIF2,4.000e-69100.00plastid translation intiation factor 2 n=2 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..115
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.691

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1098contigEcto-sp9_F_contig1098:6669..8041 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1098.850.1mRNA_Ecto-sp9_F_contig1098.850.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1098 6669..8170 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1098.850.1 ID=prot_Ecto-sp9_F_contig1098.850.1|Name=mRNA_Ecto-sp9_F_contig1098.850.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSS
VLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRV
RGFGSGSSAGYFPGR
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