prot_Ecto-sp9_F_contig10770.674.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10770.674.1
Unique Nameprot_Ecto-sp9_F_contig10770.674.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length310
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10770.674.1 vs.
Match: Alpha-(1,6)-fucosyltransferase, (family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 548 bits (1411), Expect = 1.740e-193
Identity = 287/312 (91.99%), Postives = 291/312 (93.27%), Query Frame = 0 
Query:    1 MLATMADSSHRNEKSRTVRRGGRPRRGGGTPRAALRASVVLAVLGRCSSYVRGAVAEAEVAEAEDGSKTPALSMELDVGDESRVTTADGSEGGDAAAAATAAA-PAVLFSSEWAAEYARGEEGCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMKRVDCGEESGGEAQTGWDCLFKPMPHLCTFPSAESWKEYMVSKDLPEADLVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTQGE-ASMYLCK 310
            MLATMADSSHRNEKSRTVRRGGRPRRGG TPRAAL+ASVVLAVLGRCSSYVR   AEAEVAEAEDGSKTPALSMELDVGDESRVT ADGSEGGDA         PAVLFSSEWA EYARGEEGCDLARGSFMWRG GLGSN+NNMLNAWVYALSVEKWSDMTVVV ENQMK VDCGEESGGEAQTGWDC+FKPMPHLCTFPSAESWKEYMVSKDLPEA+LVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVT G  ASMYLCK
Sbjct:    1 MLATMADSSHRNEKSRTVRRGGRPRRGGCTPRAALQASVVLAVLGRCSSYVR---AEAEVAEAEDGSKTPALSMELDVGDESRVTAADGSEGGDAXXXXXXXXXPAVLFSSEWAVEYARGEEGCDLARGSFMWRGQGLGSNINNMLNAWVYALSVEKWSDMTVVVGENQMKWVDCGEESGGEAQTGWDCIFKPMPHLCTFPSAESWKEYMVSKDLPEAELVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCK 309
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BLAST of mRNA_Ecto-sp9_F_contig10770.674.1 vs.
Match: GT23 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 528 bits (1360), Expect = 7.500e-186
Identity = 277/310 (89.35%), Postives = 288/310 (92.90%), Query Frame = 0 
Query:    1 MLATMADSSHRNEKSRTVRRGGRPRRGGGTPRAALRASVVLAVLGRCSSYVRGAVAEAEVAEAEDGSKTPALSMELDVGDESRVTTADGSEGGDAAAAATAAAPAVLFSSEWAAEYARGEEGCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMKRVDCGEESGGEAQTGWDCLFKPMPHLCTFPSAESWKEYMVSKDLPEADLVEVARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTQGEASMYLCK 310
            MLA MADSS RNEK+RTVRRGGRPRR GGTP AALRASVVL +LGRCSSYVRGAVAEAE     DG +TPALS+ELDVGDESRV TADGSEGG++AAAA A APAVLFSSEWAAEYARGE GCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMK+VDC EESGGEAQ GWDCLFKPMPHLCTFPSAE   E+MVSK LP+ADLVE ARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKV+QGEASMYLC+
Sbjct:    1 MLAMMADSSDRNEKARTVRRGGRPRRVGGTPAAALRASVVLVMLGRCSSYVRGAVAEAE-----DGLETPALSLELDVGDESRVNTADGSEGGESAAAA-ATAPAVLFSSEWAAEYARGEAGCDLARGSFMWRGHGLGSNVNNMLNAWVYALSVEKWSDMTVVVDENQMKQVDCEEESGGEAQAGWDCLFKPMPHLCTFPSAE---EHMVSKGLPKADLVEAARLDQDAVRFHPEEIVASLEGSGVDHIAALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCE 301
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BLAST of mRNA_Ecto-sp9_F_contig10770.674.1 vs.
Match: GT23 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.530e-9
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:  255 MAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTQGEA 304
            MA+ LW N+TPWLQ DV         DVF+  PF+GLH+RRGDKV +GEA
Sbjct:  105 MARLLWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEA 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10770.674.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Alpha-(1,6)-fucosyltransferase,1.740e-19391.99family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
GT237.500e-18689.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
GT238.530e-958.00protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.11350coord: 122..310
e-value: 2.6E-14
score: 55.0
IPR027350Glycosyltransferase family 23 (GT23) domainPROSITEPS51659GT23coord: 125..310
score: 25.644

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10770contigEcto-sp9_F_contig10770:988..4283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10770.674.1mRNA_Ecto-sp9_F_contig10770.674.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10770 988..4283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10770.674.1 ID=prot_Ecto-sp9_F_contig10770.674.1|Name=mRNA_Ecto-sp9_F_contig10770.674.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=310bp
MLATMADSSHRNEKSRTVRRGGRPRRGGGTPRAALRASVVLAVLGRCSSY
VRGAVAEAEVAEAEDGSKTPALSMELDVGDESRVTTADGSEGGDAAAAAT
AAAPAVLFSSEWAAEYARGEEGCDLARGSFMWRGHGLGSNVNNMLNAWVY
ALSVEKWSDMTVVVDENQMKRVDCGEESGGEAQTGWDCLFKPMPHLCTFP
SAESWKEYMVSKDLPEADLVEVARLDQDAVRFHPEEIVASLEGSGVDHIA
ALAAMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVT
QGEASMYLCK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027350GT23_dom