prot_Ecto-sp9_F_contig1077.673.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1077.673.1
Unique Nameprot_Ecto-sp9_F_contig1077.673.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length170
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1077.673.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q8_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 6.970e-47
Identity = 93/112 (83.04%), Postives = 94/112 (83.93%), Query Frame = 0 
Query:    1 MVELRENRMVGELPRAFFDLTALETLALVKNEICGPLLPEVENLXXXXXXXXXXXXXXXXXXXXXXGPLNHAMPSLMPKQAWLQCNNNQLSGTIPMELGRLTHLYSPELGGN 112
            MVELREN MVGELPRAFFDLTALETLALVKNEICGPLLPEV NL       XXXXXXXXX      GPLNHAMPS MPKQAWLQC NNQLSGTIP+ELGRLTHLYS ELGGN
Sbjct:    1 MVELRENGMVGELPRAFFDLTALETLALVKNEICGPLLPEVGNLRNLARLFXXXXXXXXXIPKEIEGPLNHAMPSSMPKQAWLQCTNNQLSGTIPIELGRLTHLYSLELGGN 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1077.673.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical6.970e-4783.04leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..164
e-value: 1.6E-31
score: 111.2
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 3..66
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 3..66
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 82..158
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 82..158
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 4..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1077contigEcto-sp9_F_contig1077:19329..20956 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1077.673.1mRNA_Ecto-sp9_F_contig1077.673.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1077 19329..21558 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1077.673.1 ID=prot_Ecto-sp9_F_contig1077.673.1|Name=mRNA_Ecto-sp9_F_contig1077.673.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp
MVELRENRMVGELPRAFFDLTALETLALVKNEICGPLLPEVENLRNLARL
FLEFNEIGGPIPKEIEGPLNHAMPSLMPKQAWLQCNNNQLSGTIPMELGR
LTHLYSPELGGNALTSNIPPELGNLARLHLLKPHSNGLSGPIPSELGRLA
NIGCMEINSLAISPLSLAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf