mRNA_Ecto-sp9_F_contig1077.673.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig1077.673.1
Unique Name	mRNA_Ecto-sp9_F_contig1077.673.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig1077.673.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q8_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.100e-44
Identity = 93/112 (83.04%), Postives = 94/112 (83.93%), Query Frame = 1

Query:    1 MVELRENRMVGELPRAFFDLTALETLALVKNEICGPLLPEVENLXXXXXXXXXXXXXXXXXXXXXXGPLNHAMPSLMPKQAWLQCNNNQLSGTIPMELGRLTHLYSPELGGN 336
            MVELREN MVGELPRAFFDLTALETLALVKNEICGPLLPEV NL       XXXXXXXXX      GPLNHAMPS MPKQAWLQC NNQLSGTIP+ELGRLTHLYS ELGGN
Sbjct:    1 MVELRENGMVGELPRAFFDLTALETLALVKNEICGPLLPEVGNLRNLARLFXXXXXXXXXIPKEIEGPLNHAMPSSMPKQAWLQCTNNQLSGTIPIELGRLTHLYSLELGGN 112

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1077.673.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1077.673.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Hypothetical	1.100e-44	83.04	leucine rich repeat protein n=1 Tax=Ectocarpus sil...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1077	contig	Ecto-sp9_F_contig1077:19329..21558 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Hypothetical leucine rich repeat protein
Ec32 ortholog	Ec-06_000720.1
Exons	4
Model size	980
Cds size	510
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1077.673.1	prot_Ecto-sp9_F_contig1077.673.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig1077 19329..20956 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928296.8933444-CDS-Ecto-sp9_F_contig1077:19328..19527	1622928296.8933444-CDS-Ecto-sp9_F_contig1077:19328..19527	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1077 19329..19527 +
1692277825.8926847-CDS-Ecto-sp9_F_contig1077:19328..19527	1692277825.8926847-CDS-Ecto-sp9_F_contig1077:19328..19527	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1077 19329..19527 +
1622928296.9069388-CDS-Ecto-sp9_F_contig1077:20250..20447	1622928296.9069388-CDS-Ecto-sp9_F_contig1077:20250..20447	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1077 20251..20447 +
1692277825.905306-CDS-Ecto-sp9_F_contig1077:20250..20447	1692277825.905306-CDS-Ecto-sp9_F_contig1077:20250..20447	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1077 20251..20447 +
1622928296.9212668-CDS-Ecto-sp9_F_contig1077:20842..20956	1622928296.9212668-CDS-Ecto-sp9_F_contig1077:20842..20956	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1077 20843..20956 +
1692277825.91528-CDS-Ecto-sp9_F_contig1077:20842..20956	1692277825.91528-CDS-Ecto-sp9_F_contig1077:20842..20956	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1077 20843..20956 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928296.935233-UTR-Ecto-sp9_F_contig1077:20956..21107	1622928296.935233-UTR-Ecto-sp9_F_contig1077:20956..21107	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1077 20957..21107 +
1692277825.9257176-UTR-Ecto-sp9_F_contig1077:20956..21107	1692277825.9257176-UTR-Ecto-sp9_F_contig1077:20956..21107	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1077 20957..21107 +
1622928296.9515214-UTR-Ecto-sp9_F_contig1077:21239..21558	1622928296.9515214-UTR-Ecto-sp9_F_contig1077:21239..21558	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1077 21240..21558 +
1692277825.9352453-UTR-Ecto-sp9_F_contig1077:21239..21558	1692277825.9352453-UTR-Ecto-sp9_F_contig1077:21239..21558	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig1077 21240..21558 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig1077:19329..21558+
coding sequence from alignment at Ecto-sp9_F_contig1077:19329..21558+

protein sequence of mRNA_Ecto-sp9_F_contig1077.673.1

>prot_Ecto-sp9_F_contig1077.673.1 ID=prot_Ecto-sp9_F_contig1077.673.1|Name=mRNA_Ecto-sp9_F_contig1077.673.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=170bp
MVELRENRMVGELPRAFFDLTALETLALVKNEICGPLLPEVENLRNLARL
FLEFNEIGGPIPKEIEGPLNHAMPSLMPKQAWLQCNNNQLSGTIPMELGR
LTHLYSPELGGNALTSNIPPELGNLARLHLLKPHSNGLSGPIPSELGRLA
NIGCMEINSLAISPLSLAT*

mRNA from alignment at Ecto-sp9_F_contig1077:19329..21558+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig1077.673.1 ID=mRNA_Ecto-sp9_F_contig1077.673.1|Name=mRNA_Ecto-sp9_F_contig1077.673.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2230bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1077:19329..21558+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGAGTTGCGCGAGAATAGGATGGTAGGAGAGCTCCCACGAGCTTT
CTTCGACCTGACGGCATTGGAGACGCTGGCTTTGGTAAAAAACGAGATTT
GTGGACCGCTCTTGCCGGAGGTGGAGAACCTTAGGAACTTGGCGAGGCTA
TTTCTCGAGTTCAACGAAATAGGCGGACCCATACCAAAGGAAATTGAGGG
TTGAAAGAAGCTCAGGATGTTCGACATTGGGTTCAACTGTTTATCCGGGC
CCATCCCCAAGGAGCTTGGACGTCTGCCTTGGCTCGGTGAATTACACCTC
AGGTACGCATTTCTGTCCTCGTTCGAAGGATAAACGAGGCAAGGATAATC
AGGCAAGAGTGATCGGTAAATGACCACGAGTCATTTTGAAGGCCGTTTTT
CTCTCGGCGGGAATCGGGGATGGGTGTGGTTTTTACGATTCTCCCCCCCT
TGGCTTCCTCGGCGGTCCACTTTCAATACTTAGACGCCGCGTCTGTGAAC
ATGGGGATCAAACTAACAATGCCCATCGCCATATCCCTCTTTGCGCTTTG
TCTTTGCCTCAAATCCCCTCAGAGACAACCAACTCAGTGGCGTGATACCG
CCGGAGCTTGGGGATCTGAACAAGTTGGTGAGCTACTGTACGGTTCAGCA
CAGGAAGATGGCTTCTTCCCCAGGGGTAGCTTACGTCTAAGAGTCTCACG
CAAATTGTGTACGGATAAGCGTAAGTTGATGCGAGTTGTGGTCAACAACT
ATTGTACACAGAAATTTCAGAAATGCGGTAAATCGCGTGGGCCAAAAGCT
CAAACATGCTCCGTAAGTATTGTGAGTGAAAGAGAGAATGACAGAAATTT
GGTGTCAGTCGGGGGTATCTCGGATGTCCGTACGCGCGTCGATTGGCCTT
GACATCGTTGTGGGTTGACAAGGACCGTTGAACCACGCTATGCCTTCCTT
GATGCCAAAACAGGCCTGGCTTCAGTGCAACAACAATCAGCTCTCAGGGA
CGATACCGATGGAGCTCGGACGTCTTACGCACCTGTACAGCCCGGAACTA
GGGGGGAATGCACTGACCTCCAACATTCCTCCGGAACTGGGAAATTTGGC
GCGTCTTCATTTGCTGAAGGTCCGCTCTTTGTATTTGTATGAGCTGTCAT
CTGTGGAGTTTGGTCGATGATAGTCACATATGCATAATAGAAAGGGTACG
ACTCGGGCCTCCGCGGTATAGATACATTTAGGGGGTATACGTCTATGGTT
TGGATGATATACGGGATCCTATATTCTGGGCTCTCGTGTGTCACTCTCTC
TGTCTGTTTCTGCGGACAATCGAAGGACTTAGGTATGTGATCACTCAGTC
AAGTCTACCATCAGCCCCTCCTTGGGGATGACAGCGAAACGAAACGAACA
GGTTAGGGAACCACAAATTGCACGCCCCTTAACACGGCAGCTGCACGGTT
GTTTGCAGTTTTTCACGTGACCCACCCCTCCTTTTCCTCAATGCCCTACT
TCTGCCACAAAAAGCCCCACTCCAACGGGTTGTCCGGCCCCATCCCGAGT
GAACTGGGACGCCTAGCGAACATTGGTTGCATGGAAATCAACTCACTAGC
CATATCCCCCCTGAGCTTGGCGACCTGAAACGCGCCACGGAATTCAATAT
CAGGGAGAACCAACTGTGTGGTTCAATCCCGTCCGAGCTGGGGCGCCTCG
ACAAGCTGCACTTCTTACGTCTGTGCAACAACAGTTTGACTGGTAGGTGG
CCACACCGTTGCGCAACCCTCGACTGCAGGTAGTAGGTAGAGTAGAGGCT
CCCACACTATGTACATCGCAGAATCACAGGTTTGCTCCCCTTGGCCCTAG
GGTGGGATCTTGGAGCGGCATCTGAATGTCTTCCTTGCCGAGCACCTTGT
TACTGCTGCAGAAAAGTCTCCTCAACCCTCAAACATCTCGTCCAATCCCG
AACAACAGGCTGCATTCCACCCCAGCTGGGGGGGCTCAAGAATTTGTCTG
AGATGGACATCAGCAACAATGAGCTAAGTGGCCAGATTCCTCCCGAGCTC
GGCGAGCTGAAGAAGCTGAAACTCCTGAGGATCAACGATAGCGACTTGAG
TGGTGAGGTTCCACAAGAGCTAGGCGCGCTATCGGCGCTGCAGACTTTGG
TTATCGACAGCGCTGTCGGCGGGCCGGACTCGGAGTCGGCGCGATTCCTC
CCTCCCCAGTGCGCCGTAAACTGGCATGGC

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1077:19329..21558+

>mRNA_Ecto-sp9_F_contig1077.673.1 ID=mRNA_Ecto-sp9_F_contig1077.673.1|Name=mRNA_Ecto-sp9_F_contig1077.673.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1077:19329..21558+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGAGTTGCGCGAGAATAGGATGGTAGGAGAGCTCCCACGAGCTTT
CTTCGACCTGACGGCATTGGAGACGCTGGCTTTGGTAAAAAACGAGATTT
GTGGACCGCTCTTGCCGGAGGTGGAGAACCTTAGGAACTTGGCGAGGCTA
TTTCTCGAGTTCAACGAAATAGGCGGACCCATACCAAAGGAAATTGAGGA
TGGTGGAGTTGCGCGAGAATAGGATGGTAGGAGAGCTCCCACGAGCTTTC
TTCGACCTGACGGCATTGGAGACGCTGGCTTTGGTAAAAAACGAGATTTG
TGGACCGCTCTTGCCGGAGGTGGAGAACCTTAGGAACTTGGCGAGGCTAT
TTCTCGAGTTCAACGAAATAGGCGGACCCATACCAAAGGAAATTGAGGGA
CCGTTGAACCACGCTATGCCTTCCTTGATGCCAAAACAGGCCTGGCTTCA
GTGCAACAACAATCAGCTCTCAGGGACGATACCGATGGAGCTCGGACGTC
TTACGCACCTGTACAGCCCGGAACTAGGGGGGAATGCACTGACCTCCAAC
ATTCCTCCGGAACTGGGAAATTTGGCGCGTCTTCATTTGCTGAAGGACCG
TTGAACCACGCTATGCCTTCCTTGATGCCAAAACAGGCCTGGCTTCAGTG
CAACAACAATCAGCTCTCAGGGACGATACCGATGGAGCTCGGACGTCTTA
CGCACCTGTACAGCCCGGAACTAGGGGGGAATGCACTGACCTCCAACATT
CCTCCGGAACTGGGAAATTTGGCGCGTCTTCATTTGCTGAAGCCCCACTC
CAACGGGTTGTCCGGCCCCATCCCGAGTGAACTGGGACGCCTAGCGAACA
TTGGTTGCATGGAAATCAACTCACTAGCCATATCCCCCCTGAGCTTGGCG
ACCTGACCCCACTCCAACGGGTTGTCCGGCCCCATCCCGAGTGAACTGGG
ACGCCTAGCGAACATTGGTTGCATGGAAATCAACTCACTAGCCATATCCC
CCCTGAGCTTGGCGACCTGA