prot_Ecto-sp9_F_contig10664.596.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10664.596.1
Unique Nameprot_Ecto-sp9_F_contig10664.596.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length352
Homology
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 5.060e-80
Identity = 223/355 (62.82%), Postives = 230/355 (64.79%), Query Frame = 0
Query:    1 GGWKGGRRWNSKGGESVGRWGGKPKRDGMTGVGVGASPAFRHSSSSTTVGGRGGGEGTTKGTKLSLERSLLKELRERLEAEQAVADVLEQXXXXXXXXXXXXXXXXXXXXXXXTGTEAESGGGSVDLTGDGDDGEDRDASPLRGDGIGRAGENKRRKVGTGKKRSRGGDGGQSGDEASVLEXXXXXXXX----QKEDGVGGEXXXXXXXXXEGRKASAGRGRFSRGXXXXXXXXXGGKSARXXXXXXXXXXXXXXXXXXXXXXXSVGRXXXXXXXXGEDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 351
            GGWKGGRRWNSKGGESVGRWG KPKR GM+GVGVGASPAFRHSSSSTTVGGR GGEGTTKGTKLSLERSLL EL            V                               E GGGSVDLTGDG         P RGD        +R             DGGQS +EASV E  XXXXXX    ++EDGV   XXXXXXXXX GRKASAGRG     XXXXXXXXX  +SAR                    XXX    XXXXXXX  EDLVFEPLPSLHAVVFS+AQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGR LDRPPLVVYFMLYEQSVEEQR
Sbjct:  614 GGWKGGRRWNSKGGESVGRWGEKPKRGGMSGVGVGASPAFRHSSSSTTVGGRRGGEGTTKGTKLSLERSLLNELAAAXXXXXXXXXV-------------------------------EKGGGSVDLTGDGXXXXXXXXXPSRGDXXXXXXXXER-------------DGGQSDNEASVPEERXXXXXXXXXXREEDGVXXXXXXXXXXXXXGRKASAGRGGXXXXXXXXXXXXXXXRSARGVGNASGPSSAARTGEGGAGXXXXXXXXXXXXXX--EDLVFEPLPSLHAVVFSFAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRTLDRPPLVVYFMLYEQSVEEQR 922          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 3.640e-63
Identity = 201/351 (57.26%), Postives = 207/351 (58.97%), Query Frame = 0
Query:    1 GGWKGGRRWNSKGGESVGRWGGKPKRDGMTGVGVGASPAFRHSSSSTTVGGRGGGEGTTKGTKLSLERSLLKELRERLEAEQAVADVLEQXXXXXXXXXXXXXXXXXXXXXXXTGTEAESGGGSVDLTGDGDDGEDRDASPLRGDGIGRAGENKRRKVGTGKKRSRGGDGGQSGDEASVLEXXXXXXXXQKEDGVGGEXXXXXXXXXEGRKASAGRGRFSRGXXXXXXXXXGGKSARXXXXXXXXXXXXXXXXXXXXXXXSVGRXXXXXXXXGEDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 351
            GGWKGGRRWNSKGGES GRWG KPKR GM+GVGVGASPAFRHSSSS T GGR   EG TK TKLSLERSLLKEL         V  V                          TG E    G S                   G G+G     K R      +RS G                      ++E+GV               KASAGRG  SRG         G     XXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXX EDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR
Sbjct:  575 GGWKGGRRWNSKGGESAGRWGAKPKRGGMSGVGVGASPAFRHSSSSATAGGRXXXEGATKATKLSLERSLLKEL---------VTPV-------------------------KTGGERSVQGRSA-----------------AGKGMGDRAATKHRY-----QRSEG----------------------EREEGV-----------KRTVKASAGRGGVSRGRGSK-----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 831          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: Dna (repair endonuclease xpf n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM79_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.490e-11
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 0
Query:  285 HAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 351
            H ++ +Y+QA  ++ +++++ PD ++LYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  105 HVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 170          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: ERCC4 (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.150e-11
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 0
Query:  285 HAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 351
            H ++ +Y+QA  ++ +++++ PD +VLYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  778 HVIMITYSQAYTNMKLIEEVYPDAIVLYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 843          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: ERCC4 (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU23_SAPPC)

HSP 1 Score: 74.3 bits (181), Expect = 8.360e-11
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 0
Query:  285 HAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 350
            H V+ +YAQA+    +L DL+P+ VVLYDPD AF+R LE Y A    D  PL VYFM+Y++S E+Q
Sbjct:  499 HLVICTYAQAKRCATLLHDLQPEHVVLYDPDVAFIRELEVYHAHYADD--PLSVYFMVYDESAEQQ 562          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: Hypothetical (protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KJP7_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 8.980e-10
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 0
Query:  288 VFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 351
            +F YA  R  +N+L  ++P FVV+YDPDAAF+R LE Y+A  P    PL VYFM+Y+ S+EEQ+
Sbjct:  651 IFVYAHERR-VNVLNHIQPSFVVMYDPDAAFIRELEVYKAQHP--DAPLKVYFMVYDTSLEEQK 711          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: DNA (repair endonuclease XPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.010e-9
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 0
Query:  287 VVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 350
            V+ +YAQ ++  ++L+DL+P+ V+LYDPD AF+R LE Y A    D  PL VYFM+YE+S E+Q
Sbjct:  498 VICTYAQGKKCGSLLEDLQPEHVILYDPDVAFIRELEIYHARYYED--PLNVYFMVYEESAEQQ 559          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: ERCC4 (domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S158_OSTLU)

HSP 1 Score: 69.7 bits (169), Expect = 2.810e-9
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 0
Query:  288 VFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 351
            ++ YA  R+ LN+L  ++P FVV+YDPDA+F+R LE YQA RP    P+ VYF++Y+ S+EEQ+
Sbjct:  610 MYVYAHERK-LNLLNRIQPSFVVMYDPDASFIRELEVYQATRP--DVPVKVYFLVYDTSLEEQK 670          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: Restriction (endonuclease type II-like n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q013S3_OSTTA)

HSP 1 Score: 68.9 bits (167), Expect = 5.020e-9
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 0
Query:  288 VFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 351
            +F YA  R+ LN+L  + P FVV+YDPDAAF+R LE YQA  P     + VYFM+Y+ S+EEQ+
Sbjct:  622 IFVYAHERK-LNLLNRIRPSFVVMYDPDAAFIRELEVYQAQHP--EVTVKVYFMVYDTSLEEQK 682          
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Match: ERCC4 (domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168J231_MUCCL)

HSP 1 Score: 67.4 bits (163), Expect = 1.550e-8
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 0
Query:  278 FEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 350
            FE +PS   +     +   +  +LQD +P F++LYDP+ AFVR +E Y+A  P     + VYFMLYE SVEEQ
Sbjct:  553 FEEIPSTSLITIQCYEDDANEQVLQDAQPRFIILYDPNPAFVRQIEVYRAQHPT--VDIRVYFMLYENSVEEQ 623          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10664.596.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ERCC45.060e-8062.82domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
ERCC43.640e-6357.26domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Dna3.490e-1149.25repair endonuclease xpf n=1 Tax=Nannochloropsis ga... [more]
ERCC45.150e-1150.75domain-containing protein n=1 Tax=Nannochloropsis ... [more]
ERCC48.360e-1153.03domain-containing protein n=2 Tax=Saprolegnia TaxI... [more]
Hypothetical8.980e-1053.13protein n=2 Tax=Ostreococcus mediterraneus TaxID=1... [more]
DNA2.010e-951.56repair endonuclease XPF n=1 Tax=Thraustotheca clav... [more]
ERCC42.810e-951.56domain-containing protein n=2 Tax=Ostreococcus sp.... [more]
Restriction5.020e-953.13endonuclease type II-like n=2 Tax=Ostreococcus tau... [more]
ERCC41.550e-845.21domain-containing protein n=4 Tax=Mucor TaxID=4830... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 64..98
NoneNo IPR availablePANTHERPTHR10150DNA REPAIR ENDONUCLEASE XPFcoord: 282..351

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10664contigEcto-sp9_F_contig10664:290..4319 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10664.596.1mRNA_Ecto-sp9_F_contig10664.596.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10664 290..4319 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10664.596.1 ID=prot_Ecto-sp9_F_contig10664.596.1|Name=mRNA_Ecto-sp9_F_contig10664.596.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=352bp
GGWKGGRRWNSKGGESVGRWGGKPKRDGMTGVGVGASPAFRHSSSSTTVG
GRGGGEGTTKGTKLSLERSLLKELRERLEAEQAVADVLEQQQQQQEKKKK
PQQRRAAAAAAASTGTEAESGGGSVDLTGDGDDGEDRDASPLRGDGIGRA
GENKRRKVGTGKKRSRGGDGGQSGDEASVLEERGGGGGGQKEDGVGGEGG
RGSSSSSEGRKASAGRGRFSRGRGSSGGSGRGGKSARGGGNASGASSAAR
TGEGGAGGCASVGRRGGGGGGGGEDLVFEPLPSLHAVVFSYAQARESLNI
LQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ
R*
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