prot_Ecto-sp9_F_contig1060.549.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1060.549.1
Unique Nameprot_Ecto-sp9_F_contig1060.549.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length792
Homology
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 1121 bits (2900), Expect = 0.000e+0
Identity = 661/773 (85.51%), Postives = 666/773 (86.16%), Query Frame = 0
Query:   16 MCASAPPAEGFTPPVCLARVCGAEDAFYSAERRLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKSAKRDGGGXGG----DALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGDWGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXFLFEDEXXXXXXXXXXXXXXXXXXXXLAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSDSKEAMDRLQNEMK 784
            MCASAPPAEGFTPPVCLARVCGA DAFYSAERRLAA                                                                                       QLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVST+KSAKRDG  X      DALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEP+EEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPR IASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSI+GSKGKE  E KEG WGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKR   XXXXXXXXXXXXXXX FLFEDE  XXXXXXXXXXXXXXXXXXLAAAVFGS+GKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVS+SKEAMDRLQNEMK
Sbjct:    1 MCASAPPAEGFTPPVCLARVCGAGDAFYSAERRLAAGSGAGRDGGSGGRRGTMRGREAAAAPVARGALPAPPTRRRSTAARWMIQHPAPSRSAATRMMSAAVAAEPVEELDTLRPPPP-----QLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTKKSAKRDGXXXXXXXXXDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPTEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRTIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSIVGSKGKELGE-KEGGWGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRLRQXXXXXXXXXXXXXXXAFLFEDEFAXXXXXXXXXXXXXXXXXXLAAAVFGSDGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSESKEAMDRLQNEMK 767          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Chloroplast (RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 1097 bits (2837), Expect = 0.000e+0
Identity = 632/650 (97.23%), Postives = 636/650 (97.85%), Query Frame = 0
Query:  147 MRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKSAKRDGGGXGGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGDWGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXFLFEDEXXXXXXXXXXXXXXXXXXXX-----LAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSDSKEAMDRLQNEMKNRTIEGG 791
            MRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRK+AKRDG G GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTD+ELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEG WGELSSSSRQ+PLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXX     LAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVS+SKEAMDRLQNEMKNRTIEGG
Sbjct:    1 MRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKTAKRDGSGGGGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGSWGELSSSSRQQPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSESKEAMDRLQNEMKNRTIEGG 650          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: RNA (polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 321 bits (822), Expect = 1.720e-99
Identity = 177/322 (54.97%), Postives = 233/322 (72.36%), Query Frame = 0
Query:  197 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASK--TSTSPGKKVEMG--QGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 514
            L    + +  +DLLKP EEI L RQI+ G+ +E  R+ L +     PS  EWA  +G+D + L   + R+++AK  M++ANLRL VS+AKRYR + L+  DLIQEG+FGL+KAAE+FDPE+GFKFSTYATWWIKQSIMR IADQSR IRLPVHVHDFLN V++AT E++ + G+ PTDEELA  L+V+A +I +YRDAAQ+ LSME  RN AS+  +  S G K +M     +  PE  P+ + Q  ++K+ + +LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:   17 LQHLFKRMTSIDLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAKRYRRRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: RNA (polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 322 bits (824), Expect = 4.520e-99
Identity = 184/365 (50.41%), Postives = 251/365 (68.77%), Query Frame = 0
Query:  171 SDMVGLGKV---STRK-----------SAKRDGGGX----GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTST-SPGKKVEMG--QGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 514
            S   GLG+    STRK           SA  +GG      G  AL++YL  ++ +DLLKP EE+ LGR IQ G+ +E  ++ L +    +PS  EWA  +G+D + L   + R+S+AK  M++ANLRL VS+AKRY+ + L+  DL+QEG+FGL+KAAE+FDP++GFKFSTYATWWIKQSIMR IADQSR IRLPVHVHD LN +++AT E++ + G+ PTDEEL+  L+V   +I++YR+AA++ LSME   N A K S  S G K +M     +  PE  P+ + Q  ++K+ +++LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:   14 SQQQGLGQARAASTRKREIAARDADDASASMNGGSAVSPVGAGALSWYLSRMSAIDLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKHRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGGKSDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 1.130e-96
Identity = 188/347 (54.18%), Postives = 247/347 (71.18%), Query Frame = 0
Query:  197 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQ--AQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAE 541
            L  Y +T+ K+ LLKP EE+VLGRQIQ+G+  E  RD L+   G  PS EEWA  L + ++EL++EL+ A +AK  M++ANLRLVVS+A+ YR + L+F DLIQEGT GLVKA EKF+PE GF+F TYA WWIK+SI+ GIA+QSR+IRLP  VH FL+ +RK T E+T  +G++PTDEEL + L  +  +IQ+YR AA  T S+      ++K S   G   ++G  + G + TP+ +   Q+  MK KVT LL TL  REQ+VV+AR+GL GA  +TLEE+GRD  LTRERVRQIE++AL KLRQPYRNYRVR+ K+ Q+ V AG+  P   A+ AAR  +AEAE
Sbjct:  240 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYAQWWIKKSILTGIANQSRVIRLPTQVHAFLSSIRKYTYELT-VDGRVPTDEELGDKLGATVEKIQHYRQAALRTDSISLDTRASNKVSD--GAADDLGTQI-GEKSTPNPEDATQAFYMKGKVTALLATLKDREQKVVRARYGLDGATSKTLEEIGRDLGLTRERVRQIESKALSKLRQPYRNYRVREHKVGQIFVDAGLREPASEAVAAARALIAEAE 582          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 304 bits (779), Expect = 3.690e-91
Identity = 159/345 (46.09%), Postives = 243/345 (70.43%), Query Frame = 0
Query:  169 RDSDMVGLGKVSTRKSAKRDGGGXGGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGK--KVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 511
            +D +  G+   ST  SA     G   + L ++ +++ +  LL+  EE++L R++Q  + +E+ RD L+   G  P+ EEWA ++GM  +EL ++L R   AK AM+++NLRLV+S+AKRY+ + L+  DLIQEG+ GLV+A EKFDPE+GFKFSTY+TWWIKQ+I+R IADQSR IRLPVH+HD LN ++K T E+    G+ PT+EELAE + +   ++++ ++ ++  +SM+A R   +K S+S GK  +V++G  +      P +  +++++K+ + +L+ TLS REQ+V++ RFGL    P+TLEE+G  F +TRERVRQIEARALHKLRQPYRN+++R++
Sbjct:  136 KDKEGEGMPSPSTAASAA----GSSSNELGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREY 476          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 294 bits (753), Expect = 2.210e-88
Identity = 166/327 (50.76%), Postives = 226/327 (69.11%), Query Frame = 0
Query:  193 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNI-ASKTSTSPGKKVEMGQGV---------SGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 509
            G ++++ YL+T+   DLL+  EE++L R IQ  + +E  R+ L+      P+  EWAVA+ +D   L +++ R+ +AK A++ +NLRLVVS+AKRY  + ++FQDL QEGT GL +A EKFDPERGF+FSTYATWWIKQ IMR IADQSR IRLPVHVHD LN VR+ T E+++  G+ PTDEE+AE  +++  ++ + R A Q T+S+E P N+ A K S+S G    MGQ           SGP   P   A ++++K  V+ +L TLS REQ V++ RFGL     +TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:   86 GEESISHYLKTMGNHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAVAVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRGMNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTFLRKAQQGTISIETPMNMGAGKGSSSGG--GSMGQNDKTMGDLLRDSGP--APVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVK 408          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.480e-85
Identity = 155/324 (47.84%), Postives = 220/324 (67.90%), Query Frame = 0
Query:  193 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRY--RFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASK---TSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 511
            G D +  YL+++   DLL   EE++L R +Q  + +E  R+ L++     P+  EWA A+G+D ++L +++ R+ +AK AM+ +NLRLV+S+AKRY  R   LS QDL QEG+ GLVKA EKFDPERGF+FSTYATWWIKQS+MR IADQSR IRLPVH+HD LN VRK   E+T K G+ PT EE+AE   ++  ++Q+   +++ T+S E    +              V +   ++  E  P+++A   +MK  +  LL TLS+REQ+V++ RFGL     +TLEE+G+ FR+TRER+RQIEARALHKLRQPYRN++++ +
Sbjct:  170 GVDTMKDYLKSMGNHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQIKQY 493          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8QQK8_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.530e-82
Identity = 156/331 (47.13%), Postives = 222/331 (67.07%), Query Frame = 0
Query:  193 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWA--VALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSP------------GKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 509
            G D++ +Y++T+   +LLK +EEI+L R+IQ  + +E  R+ L+      P+  EWA  V  GM   E+ K++ R+ +AK A+  +NLRLV+S+AKRY+ + L+FQDL QEGT GL +A EKFDPERGF+FSTYATWWIKQSIMR IADQ+R IRLPVH+HD L  + KA  ++    G+ PT EE+A  +EV   RI++ + +A   +S+E     + KT  S             G++  +   +  PE+ PD  A+++++K  ++ L+ TL+ REQ V++ RFGL    P+TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:  125 GFDSMKYYMKTMGNHELLKKNEEIILAREIQVLIGWEGKREELEAKLLRPPTYAEWASNVQSGMTVPEMKKQIRRSLRAKTALTESNLRLVISIAKRYQNRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQARTIRLPVHIHDQLALMNKAERDLQQSLGRDPTKEEIAAKIEVKPERIEFLKRSALKAISIETELG-SGKTKGSXXXXXXXXXXXXXGRQFTLQDTLKDPEQKPDFMAENNMLKDDISRLICTLNSREQAVIRMRFGLDDGKPKTLEEIGRKFSVTRERIRQIEARALHKLRQPYRNHGVK 454          
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH78_9STRA)

HSP 1 Score: 278 bits (710), Expect = 1.540e-81
Identity = 153/334 (45.81%), Postives = 228/334 (68.26%), Query Frame = 0
Query:  193 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWA--VALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKT---------------STSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 509
            G D++ +Y++T+A  DLLK +EEI+L R+IQ  V++E  R+ L+      P+  EWA  +  GM   E+ +++ R+ +AK A+  +NLRLV+S+AKRY+ + L+FQDL QEGT GL +A EKFDPERGF+FSTYATWWIKQSIMR IADQ R IRLPVH+HD LN +RK   +++++ G+ P++EE+A  +++   ++++ +  ++ +LSME   N +SKT               ++S  ++  +G  V  P++ P   A+  +++  +  L+ TL+ REQ V++ RFGL     +TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:  121 GMDSMKYYMKTMANHDLLKKNEEIILAREIQILVAWEKKREDLEANLMRPPTYAEWAEDIREGMTVPEMKRQIRRSLRAKSALTESNLRLVISIAKRYQNRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLNVIRKVERDLSNELGREPSNEEVAGRVDLKPEKVEFLKKVSKHSLSMETQLN-SSKTKGSGAGTGGSKGTGGASSSERQFTLGDTVKDPKQAPMDMAEYGMLRDDMKRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVK 453          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized0.000e+085.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Chloroplast0.000e+097.23RNA-polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
RNA1.720e-9954.97polymerase n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
RNA4.520e-9950.41polymerase n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
RNA_pol_sigma701.130e-9654.18domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical3.690e-9146.09protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical2.210e-8850.76protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical1.480e-8547.84protein n=2 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical1.530e-8247.13protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical1.540e-8145.81protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 633..655
NoneNo IPR availableCOILSCoilCoilcoord: 530..550
NoneNo IPR availableCOILSCoilCoilcoord: 769..789
NoneNo IPR availableGENE3D1.10.601.10coord: 227..345
e-value: 3.5E-43
score: 150.4
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 167..511
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGBcoord: 167..511
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..791
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 473..488
score: 59.35
coord: 297..310
score: 62.44
coord: 321..329
score: 89.82
coord: 488..499
score: 62.1
coord: 452..464
score: 43.57
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 297..310
IPR000943RNA polymerase sigma-70PROSITEPS00716SIGMA70_2coord: 473..499
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 354..406
e-value: 2.9E-8
score: 33.7
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 430..513
e-value: 1.8E-25
score: 90.5
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 346..416
e-value: 1.9E-13
score: 52.8
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 274..342
e-value: 2.7E-19
score: 68.7
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 449..501
e-value: 2.3E-13
score: 49.4
IPR009042RNA polymerase sigma-70 region 1.2PFAMPF00140Sigma70_r1_2coord: 195..226
e-value: 3.9E-7
score: 30.0
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 273..501
e-value: 5.9E-29
score: 98.8
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 344..402
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 429..510
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 195..343

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1060contigEcto-sp9_F_contig1060:20134..26812 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1060.549.1mRNA_Ecto-sp9_F_contig1060.549.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1060 20131..26941 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1060.549.1 ID=prot_Ecto-sp9_F_contig1060.549.1|Name=mRNA_Ecto-sp9_F_contig1060.549.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=792bp
MVSSRRRITVCVVGAMCASAPPAEGFTPPVCLARVCGAEDAFYSAERRLA
AASGAGRDGGGGGRRGTMRGREAAAAPVARGALPAPPTRRGSTAAGWMMQ
RPAASRSAATRMMSAAVAAEPVEELDTLRPPPPQQQQQQLPGMPFDMRDD
SEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKSAKRDGGGGGGDALAFY
LRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAV
ALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQ
EGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHV
HDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLS
MEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLM
TLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLR
QPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVA
LVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGDWGELSSS
SRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRLRQEVAEEEKEEK
EEEDDAFLFEDEFANELDKHLDDDFEDDFEDDLAAAVFGSEGKSGSRGGK
VSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLD
SLNLLDDDDDVGGRAGAGVSDSKEAMDRLQNEMKNRTIEGG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR007624RNA_pol_sigma70_r3
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR009042RNA_pol_sigma70_r1_2
IPR014284RNA_pol_sigma-70_dom
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2