mRNA_Ecto-sp9_F_contig1060.549.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1060.549.1
Unique NamemRNA_Ecto-sp9_F_contig1060.549.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Chloroplast (RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 1176 bits (3043), Expect = 0.000e+0
Identity = 670/694 (96.54%), Postives = 675/694 (97.26%), Query Frame = 1 
Query:  442 MRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKSAKRDGGGXGGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGDWGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXFLFEDEXXXXXXXXXXXXXXXXXXXX-----LAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSDSKEAMDRLQNEMKNRTIEGG*RGGVRFYDCRKERIAGVHAFSGWMVDVSCDRCDWLPFHNLSGL 2508
            MRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRK+AKRDG G GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTD+ELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEG WGELSSSSRQ+PLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXX     LAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVS+SKEAMDRLQNEMKNRTIEGG RGGVRFYDCRKERIAGV AFSGWM DVSCDRCDWLP H +SGL
Sbjct:    1 MRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKTAKRDGSGGGGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGSWGELSSSSRQQPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSESKEAMDRLQNEMKNRTIEGGWRGGVRFYDCRKERIAGVDAFSGWM-DVSCDRCDWLPSHYVSGL 693
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 1122 bits (2901), Expect = 0.000e+0
Identity = 661/773 (85.51%), Postives = 666/773 (86.16%), Query Frame = 1 
Query:   49 MCASAPPAEGFTPPVCLARVCGAEDAFYSAERRLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKSAKRDGGGXGG----DALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGDWGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRXXXXXXXXXXXXXXXXXXXFLFEDEXXXXXXXXXXXXXXXXXXXXLAAAVFGSEGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSDSKEAMDRLQNEMK 2355
            MCASAPPAEGFTPPVCLARVCGA DAFYSAERRLAA                                                                                       QLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVST+KSAKRDG  X      DALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEP+EEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPR IASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSI+GSKGKE  E KEG WGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKR   XXXXXXXXXXXXXXX FLFEDE  XXXXXXXXXXXXXXXXXXLAAAVFGS+GKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVS+SKEAMDRLQNEMK
Sbjct:    1 MCASAPPAEGFTPPVCLARVCGAGDAFYSAERRLAAGSGAGRDGGSGGRRGTMRGREAAAAPVARGALPAPPTRRRSTAARWMIQHPAPSRSAATRMMSAAVAAEPVEELDTLRPPPP-----QLPGMPFDMRDDSEFYLEMERKKEAGPTYTRDSDMVGLGKVSTKKSAKRDGXXXXXXXXXDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPTEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRTIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVALVHQRMGTAPGGGKPAGDVGITSELQSIVGSKGKELGE-KEGGWGELSSSSRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRLRQXXXXXXXXXXXXXXXAFLFEDEFAXXXXXXXXXXXXXXXXXXLAAAVFGSDGKSGSRGGKVSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLDSLNLLDDDDDVGGRAGAGVSESKEAMDRLQNEMK 767
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: RNA (polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 321 bits (822), Expect = 4.600e-99
Identity = 177/322 (54.97%), Postives = 233/322 (72.36%), Query Frame = 1 
Query:  592 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASK--TSTSPGKKVEMG--QGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 1545
            L    + +  +DLLKP EEI L RQI+ G+ +E  R+ L +     PS  EWA  +G+D + L   + R+++AK  M++ANLRL VS+AKRYR + L+  DLIQEG+FGL+KAAE+FDPE+GFKFSTYATWWIKQSIMR IADQSR IRLPVHVHDFLN V++AT E++ + G+ PTDEELA  L+V+A +I +YRDAAQ+ LSME  RN AS+  +  S G K +M     +  PE  P+ + Q  ++K+ + +LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:   17 LQHLFKRMTSIDLLKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSARAKSTMISANLRLAVSIAKRYRRRGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLELGRHPTDEELAMRLQVTAQKIVFYRDAAQSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 338
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: RNA (polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 322 bits (824), Expect = 1.210e-98
Identity = 184/365 (50.41%), Postives = 251/365 (68.77%), Query Frame = 1 
Query:  514 SDMVGLGKV---STRK-----------SAKRDGGGX----GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTST-SPGKKVEMG--QGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLD 1545
            S   GLG+    STRK           SA  +GG      G  AL++YL  ++ +DLLKP EE+ LGR IQ G+ +E  ++ L +    +PS  EWA  +G+D + L   + R+S+AK  M++ANLRL VS+AKRY+ + L+  DL+QEG+FGL+KAAE+FDP++GFKFSTYATWWIKQSIMR IADQSR IRLPVHVHD LN +++AT E++ + G+ PTDEEL+  L+V   +I++YR+AA++ LSME   N A K S  S G K +M     +  PE  P+ + Q  ++K+ +++LL TLS REQEVV+ RFGL     RTLEE+G+ F +TRERVRQIE+RAL KLRQPYRN+++R +  +
Sbjct:   14 SQQQGLGQARAASTRKREIAARDADDASASMNGGSAVSPVGAGALSWYLSRMSAIDLLKPEEEVTLGRHIQLGLEWEAAKEELAVRLERQPSRAEWAAHMGVDEDTLKLIMIRSSRAKTTMISANLRLAVSIAKRYKHRGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLELGRTPTDEELSLRLQVPTQKIEFYREAARSVLSMEQSLNNARKGSAASLGGKSDMTLEDSLRDPEPLPEDRTQQSMLKENMSQLLGTLSPREQEVVRLRFGLDDGRARTLEEIGQVFCVTRERVRQIESRALQKLRQPYRNHKLRAYAFE 378
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KA31_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 3.100e-96
Identity = 188/347 (54.18%), Postives = 247/347 (71.18%), Query Frame = 1 
Query:  592 LAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQ--AQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAE 1626
            L  Y +T+ K+ LLKP EE+VLGRQIQ+G+  E  RD L+   G  PS EEWA  L + ++EL++EL+ A +AK  M++ANLRLVVS+A+ YR + L+F DLIQEGT GLVKA EKF+PE GF+F TYA WWIK+SI+ GIA+QSR+IRLP  VH FL+ +RK T E+T  +G++PTDEEL + L  +  +IQ+YR AA  T S+      ++K S   G   ++G  + G + TP+ +   Q+  MK KVT LL TL  REQ+VV+AR+GL GA  +TLEE+GRD  LTRERVRQIE++AL KLRQPYRNYRVR+ K+ Q+ V AG+  P   A+ AAR  +AEAE
Sbjct:  240 LNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETAHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYAQWWIKKSILTGIANQSRVIRLPTQVHAFLSSIRKYTYELT-VDGRVPTDEELGDKLGATVEKIQHYRQAALRTDSISLDTRASNKVSD--GAADDLGTQI-GEKSTPNPEDATQAFYMKGKVTALLATLKDREQKVVRARYGLDGATSKTLEEIGRDLGLTRERVRQIESKALSKLRQPYRNYRVREHKVGQIFVDAGLREPASEAVAAARALIAEAE 582
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 304 bits (779), Expect = 9.400e-91
Identity = 159/345 (46.09%), Postives = 243/345 (70.43%), Query Frame = 1 
Query:  508 RDSDMVGLGKVSTRKSAKRDGGGXGGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSPGK--KVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 1536
            +D +  G+   ST  SA     G   + L ++ +++ +  LL+  EE++L R++Q  + +E+ RD L+   G  P+ EEWA ++GM  +EL ++L R   AK AM+++NLRLV+S+AKRY+ + L+  DLIQEG+ GLV+A EKFDPE+GFKFSTY+TWWIKQ+I+R IADQSR IRLPVH+HD LN ++K T E+    G+ PT+EELAE + +   ++++ ++ ++  +SM+A R   +K S+S GK  +V++G  +      P +  +++++K+ + +L+ TLS REQ+V++ RFGL    P+TLEE+G  F +TRERVRQIEARALHKLRQPYRN+++R++
Sbjct:  136 KDKEGEGMPSPSTAASAA----GSSSNELGWFFKSIGQHSLLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSRPAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDGPCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDADKPKTLEEIGNVFSVTRERVRQIEARALHKLRQPYRNHKLREY 476
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJI8_9STRA)

HSP 1 Score: 294 bits (753), Expect = 5.440e-88
Identity = 166/327 (50.76%), Postives = 226/327 (69.11%), Query Frame = 1 
Query:  580 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNI-ASKTSTSPGKKVEMGQGV---------SGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 1530
            G ++++ YL+T+   DLL+  EE++L R IQ  + +E  R+ L+      P+  EWAVA+ +D   L +++ R+ +AK A++ +NLRLVVS+AKRY  + ++FQDL QEGT GL +A EKFDPERGF+FSTYATWWIKQ IMR IADQSR IRLPVHVHD LN VR+ T E+++  G+ PTDEE+AE  +++  ++ + R A Q T+S+E P N+ A K S+S G    MGQ           SGP   P   A ++++K  V+ +L TLS REQ V++ RFGL     +TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:   86 GEESISHYLKTMGNHDLLRREEEVILARHIQILIKWEEVREELESKLIRPPTYAEWAVAVNLDVPGLKRQIRRSQRAKAALIESNLRLVVSIAKRYVNRGMNFQDLCQEGTLGLTRATEKFDPERGFRFSTYATWWIKQGIMRAIADQSREIRLPVHVHDQLNGVRRVTKELSELLGRDPTDEEIAEKAKITVQKLTFLRKAQQGTISIETPMNMGAGKGSSSGG--GSMGQNDKTMGDLLRDSGP--APVDLASNEMLKDDVSRMLCTLSPREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVK 408
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 290 bits (741), Expect = 3.590e-85
Identity = 155/324 (47.84%), Postives = 220/324 (67.90%), Query Frame = 1 
Query:  580 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRY--RFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASK---TSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVRDF 1536
            G D +  YL+++   DLL   EE++L R +Q  + +E  R+ L++     P+  EWA A+G+D ++L +++ R+ +AK AM+ +NLRLV+S+AKRY  R   LS QDL QEG+ GLVKA EKFDPERGF+FSTYATWWIKQS+MR IADQSR IRLPVH+HD LN VRK   E+T K G+ PT EE+AE   ++  ++Q+   +++ T+S E    +              V +   ++  E  P+++A   +MK  +  LL TLS+REQ+V++ RFGL     +TLEE+G+ FR+TRER+RQIEARALHKLRQPYRN++++ +
Sbjct:  170 GVDTMKDYLKSMGNHDLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVGVDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNTLSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRETMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFGLDDGKAKTLEEIGKRFRVTRERIRQIEARALHKLRQPYRNHQIKQY 493
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8QQK8_9STRA)

HSP 1 Score: 280 bits (717), Expect = 3.570e-82
Identity = 156/331 (47.13%), Postives = 222/331 (67.07%), Query Frame = 1 
Query:  580 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWA--VALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSP------------GKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 1530
            G D++ +Y++T+   +LLK +EEI+L R+IQ  + +E  R+ L+      P+  EWA  V  GM   E+ K++ R+ +AK A+  +NLRLV+S+AKRY+ + L+FQDL QEGT GL +A EKFDPERGF+FSTYATWWIKQSIMR IADQ+R IRLPVH+HD L  + KA  ++    G+ PT EE+A  +EV   RI++ + +A   +S+E     + KT  S             G++  +   +  PE+ PD  A+++++K  ++ L+ TL+ REQ V++ RFGL    P+TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:  125 GFDSMKYYMKTMGNHELLKKNEEIILAREIQVLIGWEGKREELEAKLLRPPTYAEWASNVQSGMTVPEMKKQIRRSLRAKTALTESNLRLVISIAKRYQNRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQARTIRLPVHIHDQLALMNKAERDLQQSLGRDPTKEEIAAKIEVKPERIEFLKRSALKAISIETELG-SGKTKGSXXXXXXXXXXXXXGRQFTLQDTLKDPEQKPDFMAENNMLKDDISRLICTLNSREQAVIRMRFGLDDGKPKTLEEIGRKFSVTRERIRQIEARALHKLRQPYRNHGVK 454
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH78_9STRA)

HSP 1 Score: 278 bits (710), Expect = 3.570e-81
Identity = 153/334 (45.81%), Postives = 228/334 (68.26%), Query Frame = 1 
Query:  580 GGDALAFYLRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWA--VALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKT---------------STSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYRNYRVR 1530
            G D++ +Y++T+A  DLLK +EEI+L R+IQ  V++E  R+ L+      P+  EWA  +  GM   E+ +++ R+ +AK A+  +NLRLV+S+AKRY+ + L+FQDL QEGT GL +A EKFDPERGF+FSTYATWWIKQSIMR IADQ R IRLPVH+HD LN +RK   +++++ G+ P++EE+A  +++   ++++ +  ++ +LSME   N +SKT               ++S  ++  +G  V  P++ P   A+  +++  +  L+ TL+ REQ V++ RFGL     +TLEE+GR F +TRER+RQIEARALHKLRQPYRN+ V+
Sbjct:  121 GMDSMKYYMKTMANHDLLKKNEEIILAREIQILVAWEKKREDLEANLMRPPTYAEWAEDIREGMTVPEMKRQIRRSLRAKSALTESNLRLVISIAKRYQNRGLNFQDLCQEGTLGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLNVIRKVERDLSNELGREPSNEEVAGRVDLKPEKVEFLKKVSKHSLSMETQLN-SSKTKGSGAGTGGSKGTGGASSSERQFTLGDTVKDPKQAPMDMAEYGMLRDDMKRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIEARALHKLRQPYRNHSVK 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1060.549.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Chloroplast0.000e+096.54RNA-polymerase sigma factor n=1 Tax=Ectocarpus sil... [more]
Uncharacterized0.000e+085.51protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RNA4.600e-9954.97polymerase n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
RNA1.210e-9850.41polymerase n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
RNA_pol_sigma703.100e-9654.18domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical9.400e-9146.09protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical5.440e-8850.76protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical3.590e-8547.84protein n=2 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical3.570e-8247.13protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical3.570e-8145.81protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1060contigEcto-sp9_F_contig1060:20131..26941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1107.8
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LNI6
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRNA polymerase sigma-70 region 3
Ec32 orthologEc-24_002980.1
Exons6
Model size2508
Cds size2376
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1060.549.1prot_Ecto-sp9_F_contig1060.549.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1060 20134..26812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928278.6292298-UTR-Ecto-sp9_F_contig1060:20130..201331622928278.6292298-UTR-Ecto-sp9_F_contig1060:20130..20133Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1060 20131..20133 +
1692277818.5370855-UTR-Ecto-sp9_F_contig1060:20130..201331692277818.5370855-UTR-Ecto-sp9_F_contig1060:20130..20133Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1060 20131..20133 +
1622928278.7334256-UTR-Ecto-sp9_F_contig1060:26812..269411622928278.7334256-UTR-Ecto-sp9_F_contig1060:26812..26941Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1060 26813..26941 +
1692277818.5977418-UTR-Ecto-sp9_F_contig1060:26812..269411692277818.5977418-UTR-Ecto-sp9_F_contig1060:26812..26941Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1060 26813..26941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928278.6454659-CDS-Ecto-sp9_F_contig1060:20133..202301622928278.6454659-CDS-Ecto-sp9_F_contig1060:20133..20230Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 20134..20230 +
1692277818.5466576-CDS-Ecto-sp9_F_contig1060:20133..202301692277818.5466576-CDS-Ecto-sp9_F_contig1060:20133..20230Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 20134..20230 +
1622928278.6577296-CDS-Ecto-sp9_F_contig1060:20516..214391622928278.6577296-CDS-Ecto-sp9_F_contig1060:20516..21439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 20517..21439 +
1692277818.5545115-CDS-Ecto-sp9_F_contig1060:20516..214391692277818.5545115-CDS-Ecto-sp9_F_contig1060:20516..21439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 20517..21439 +
1622928278.6808193-CDS-Ecto-sp9_F_contig1060:23527..236741622928278.6808193-CDS-Ecto-sp9_F_contig1060:23527..23674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 23528..23674 +
1692277818.562276-CDS-Ecto-sp9_F_contig1060:23527..236741692277818.562276-CDS-Ecto-sp9_F_contig1060:23527..23674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 23528..23674 +
1622928278.6922565-CDS-Ecto-sp9_F_contig1060:24029..242361622928278.6922565-CDS-Ecto-sp9_F_contig1060:24029..24236Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 24030..24236 +
1692277818.570119-CDS-Ecto-sp9_F_contig1060:24029..242361692277818.570119-CDS-Ecto-sp9_F_contig1060:24029..24236Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 24030..24236 +
1622928278.703488-CDS-Ecto-sp9_F_contig1060:25644..266221622928278.703488-CDS-Ecto-sp9_F_contig1060:25644..26622Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 25645..26622 +
1692277818.5778058-CDS-Ecto-sp9_F_contig1060:25644..266221692277818.5778058-CDS-Ecto-sp9_F_contig1060:25644..26622Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 25645..26622 +
1622928278.7192693-CDS-Ecto-sp9_F_contig1060:26788..268121622928278.7192693-CDS-Ecto-sp9_F_contig1060:26788..26812Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 26789..26812 +
1692277818.588028-CDS-Ecto-sp9_F_contig1060:26788..268121692277818.588028-CDS-Ecto-sp9_F_contig1060:26788..26812Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1060 26789..26812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1060.549.1

>prot_Ecto-sp9_F_contig1060.549.1 ID=prot_Ecto-sp9_F_contig1060.549.1|Name=mRNA_Ecto-sp9_F_contig1060.549.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=792bp
MVSSRRRITVCVVGAMCASAPPAEGFTPPVCLARVCGAEDAFYSAERRLA
AASGAGRDGGGGGRRGTMRGREAAAAPVARGALPAPPTRRGSTAAGWMMQ
RPAASRSAATRMMSAAVAAEPVEELDTLRPPPPQQQQQQLPGMPFDMRDD
SEFYLEMERKKEAGPTYTRDSDMVGLGKVSTRKSAKRDGGGGGGDALAFY
LRTVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAV
ALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQ
EGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHV
HDFLNRVRKATLEMTDKNGKLPTDEELAEHLEVSAVRIQYYRDAAQATLS
MEAPRNIASKTSTSPGKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLM
TLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLR
QPYRNYRVRDFKLDQMLVQAGVLGPPKGAIKAARQAVAEAEAAAKRNEVA
LVHQRMGTAPGGGKPAGDVGITSELQSILGSKGKEPEEEKEGDWGELSSS
SRQEPLLDVGLSVGAGGASVGRRPRGRPANEMLLRKRLRQEVAEEEKEEK
EEEDDAFLFEDEFANELDKHLDDDFEDDFEDDLAAAVFGSEGKSGSRGGK
VSMDAVRTLNKAWTNTANSSPREAADQLSMMGVAPRSADEEEQQLLSTLD
SLNLLDDDDDVGGRAGAGVSDSKEAMDRLQNEMKNRTIEGG*
back to top

mRNA from alignment at Ecto-sp9_F_contig1060:20131..26941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1060.549.1 ID=mRNA_Ecto-sp9_F_contig1060.549.1|Name=mRNA_Ecto-sp9_F_contig1060.549.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6811bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1060:20131..26941+ (Ectocarpus species9 EcSCA_722f female)
GCCATGGTTTCTTCCCGGCGAAGAATAACGGTCTGTGTGGTAGGTGCAAT
GTGCGCCTCGGCGCCACCAGCTGAGGGCTTCACCCCACCAGTCTGTTTAG
GTGAGCCACAGAGAGCGTTTTGGGTGCAGGGGGTGCATGCGTAACGCGCC
ACCTTGCATGGGCACCCTGTACACATTCAGGCAGAGAAGGAGAGAGGCAG
GGCACTTGTTGTTTGTTGCGCATGGCAAAGGCGCAACGTGTTGTTGTCCA
TCATTCTCAACTACTTCGATAAATTACATGTAGGTCAGATTGTGTTTGAA
CCCGTCATTATTGCGGGCTTGGAGTCTGACGCAAACATGTGTGCGCCAAC
CTGCGCTTGCTTCTTTTGACGTTTCGGGAAAAACAGCGCGTGTTTGTGGT
GCGGAGGACGCGTTCTACTCCGCGGAGCGTCGATTAGCGGCAGCCTCCGG
GGCGGGCAGAGACGGCGGCGGTGGAGGTAGGCGAGGGACGATGAGAGGGC
GAGAGGCAGCTGCTGCGCCCGTTGCGCGTGGAGCGTTGCCAGCACCTCCT
ACAAGAAGAGGGTCGACAGCAGCAGGGTGGATGATGCAACGGCCCGCCGC
AAGTAGGTCAGCAGCAACGAGGATGATGTCTGCCGCCGTCGCAGCAGAGC
CAGTAGAAGAGCTAGACACGCTGCGGCCGCCGCCGCCGCAGCAGCAGCAG
CAGCAGCTGCCCGGGATGCCGTTCGACATGCGCGACGACAGCGAGTTCTA
CCTCGAGATGGAGCGAAAGAAGGAGGCCGGACCAACGTACACTAGGGACA
GCGACATGGTGGGCCTCGGAAAGGTTTCCACAAGAAAGTCGGCGAAGCGG
GACGGGGGCGGCGGCGGCGGAGACGCCCTCGCCTTCTACCTCCGCACCGT
CGCCAAGGTCGACCTCCTCAAGCCCCACGAAGAGATAGTGCTCGGGCGGC
AGATCCAAAAGGGGGTCTCCTACGAAAACACCCGGGATCACCTCCAGCTC
ATGCGCGGCTACGAGCCTTCCGAGGAGGAGTGGGCGGTCGCTCTCGGCAT
GGACCGGGAGGAGCTGGTGAAGGAGCTCAGCAGGGCGAGCAAGGCAAAGA
TGGCCATGCTGGCCGCGAACCTGAGGCTCGTCGTTAGCGTCGCCAAGCGG
TACCGCTTCCAGAAGCTGAGCTTCCAGGACCTTATACAGGAGGGGACGTT
CGGCCTCGTGAAGGCGGCGGAGAAGTTTGACCCCGAGAGGGGGTTCAAGT
TCTCCACCTACGCCACCTGGTGGATCAAGCAGAGCATCATGCGGGGCATC
GCCGACCAGGTGTGTTTGTGCTTGTGGGTCCCCCCGTATGTGTATGTGTG
TGTGTGTGTGTGTGTGTTTTTTTATCCCAGGGTGGATGCACACAACACCA
CCACAGCCGCTGTAACTGCTGCTGCTGCTGAACTGCTGGATGTTGAGAAA
TTGCTGTGGCAGGTTGTCGTGTGGCGTCCATGATTTCCAGAAATTCACGC
GTTTGCTTGCTGCGGGGTCGTGCAACCAGGGTTGTATGCTAAGAGCATGC
CATTTCTCTCTGTGTGCGAGGTATGCGTACCTCCGGCTAATCCAAGAAAC
GGCAGAGGTCTATCTACGGTATATCTGTGCATACAGCCTTTCACATATTT
TAATCAAGCAGGTCGTGGAGGTGGTGTTGGACAGCGCCGCTGCTGCGGCT
GATCTCTTGTGTTGTACGTGTGATTTAAAGCCTAAATAGTTCACAGAGCG
CAACCGCAGTCGGTGGAGAGTTAATTGCGAATCTCTACGCTTGCGGTTAG
CAAGGTGCCCTCACGATGAGCAACGACGACGCAGCTACGGGCACGCGTAG
AATAACGTGAACCGCAATGTAGTCAGGGTTATTTCTGGTGTCTTGTGACC
ACAAGAGAGAGTTGGTGGAAAGGAAGCCGGCCAGACGAGAGGGGCTTAAG
CGGACAGGTATCGGCCATCGACGCCACGGAAACACCTCATCTCAGACAGA
AGAACAGAGAAGTCTTCGATGAGTCGGGTCGGAGAGATGCATCGCTTCTT
GCTGCAGATGGTCAATTAGTAGTCGGCGTGTTGCTGTAGGGAACTACACC
GCAACGTGGTTGCCATGTAAGAACTGCACCGTTAGTCACACTGCAGCGTT
AATTTGCCCATATACCGCAATCGTCCCCGATTTGAGAAAGAGTTTGCTGT
TGTGACACTTGTAGACCTTGTCCCATGTTCTTGAAGCGGGAAAAGTGTCC
TAATAGTTATCTCCCCCCCTACTCAGTATTGTTTTTACATTCTGCGGGGC
ATCACGCTTTAAAAAGCATGGTGTTCCTTCGGTCGGTCGATGTTGCCCGC
TGTAGCCGGGGTCGAATTCGGCGGCAGGTGTCGTCTCGACCGGTGTTTGT
TTGCCTCTCATGCTTTGGGAGGAATCCAAGCAACTTGTATGTGTGTACCA
CCTTCCTTTCTTTTCTTGGCGCATCTGTAGGTGTGTTGCAATGGGAGGGG
GGGTGCACCGGTGTTTTGGGGTTGCCAAGAGTTACGGCTTTGCTCCGAGA
TGTGTATTGTTGTCGCCGACACCGCCGTGTTGAAAGCTGTTTTCACGGGC
TTTGTTCGGTTTTGCTACAGATGACGAGCGGCTTGTTCATGTTTTGCGTT
TCGGGTCTGATGTGCTGAGTGCAATGCGCACACCCAGGTCAGCGTGCTGG
TGCAGGCCGCACGTGTCTTTGCTTCTCGCCCCCACGCCCCGAACGCGGTA
CCTTGAAAGTCTATTTGCATTCGCCATGGTCGTTCACGCGAATAACTGTA
CCGACAACATCATGGAGTCACCTTCCCGATTTCCGTCCATGTGTTGTCTT
GTTCAACAGTGCACCGCAGTGAACTGCGTGGGCATCTACCATCCCCCCCC
CCCCCATCCCCCCCGTCAACCCCCCCTCCCGGTGTTCTCATGTTAAATGA
CGTACGCAAACCAAGAAGTGACTTGGCGGGTGCCACGAGTAAACGTTGTG
ACCGGTGCCCCTCCCTCCCCCATGGTATTCCACTTGACGCGCAGCCTCGG
GTACTGCTGTTGGTGGCTTGCCCCCTCCCCTTGTGGTGTTCCCCCCCTCG
TGATGCCATAGCTCCGTCCCCTCGTGCAGAGTGTAGCGTGACTTCCTGAA
CCCATGGGTATCTGAGTCCACTTTTGTTTCCTCCCTTCTATGATGTACCT
TTTTTGGGTAAGTTGGCCTGTGAACACGAAAGGCCTCCTCGTCAGCTAGA
CCAGTACAGATGTTACAAGGTACTGAGCGGAGACCGGAATGGTTTTTTTT
GTGCAGACAGCCACTACGACAATTTCCGCCATCCTCACCCCCCCCCCCGC
CGCCTTTTTATCCTCGTGTTTTTTTTCTTTCTGGCCTCGCGCCGCAGAGC
CGAATTATCCGGCTGCCGGTGCACGTGCACGACTTCCTGAACCGGGTCCG
GAAGGCCACGCTCGAGATGACGGATAAGAACGGAAAGCTTCCCACCGACG
AGGAGCTGGCCGAGCACCTAGAGGTTTCGGCGGTTAGAATTCAGGTCCGT
TTTTTCATCCTTTCGATTAAATTGAGGTACAGTCGTAGTCCCGGTTTAAC
GGCCACTAGTGTCACAAAACGCTACGTCCGCTATGGAGGGCATCGCCGCT
AAGCCGGATTGGCAGTTATGTACTTAGTTGTTTGGCTACCGAGGTGCAGT
AGTGCCACGAAATCGTGGGACCACTATTCAGGGCATCCCGCTTAACAGGG
AACCACTAACCCGCGACCGCGACTGTAGAGCATGGAAGAAAAGACAAGGA
AAAATATCAAAAGCAGTCCCAGCTGTAGCCCCCCTCCCCCCCCTCCAACT
ACCAAAACGCCTCCCTCCTTCCTTCCCTTCGCAAACCCCGGCCTTGCAGT
ACTACCGCGACGCCGCTCAGGCGACCCTGAGTATGGAGGCCCCTCGGAAC
ATCGCTTCCAAGACTTCCACCTCCCCTGGCAAGAAGGTGGAAATGGGGCA
GGGTGTCTCTGGTCCGGAGAAGACTCCCGACAAGCAGGCGCAGAGCGACG
TCATGAAGCAGAAGGTCACGGAGCTGCTGATGACGTTGAGCATCAGGGAG
CAAGAGGTGCGTTCACACAACATAAGTGTGTGTGTTTTTTTTTCTCGCAT
CGACCGCGCTCTAGCTGACTGTCTGATGAAGAGACGTCAGTCCCAGTGCG
GTTGAAAAATGGTTCTATAGGTCACCATGATATGGGACTCCGTGAGGGGG
CGTCATGCGGGAGGCTGTTCTACGGTTACAGTTGTCATGGAGAAATCTTC
AGATTTGGAATCCCGATTTTACGCGTTTTACGTCCAAATCCACATGAGGC
CACAGGAGTTGTGCGCACTTCGTTGGAAAAGCACACAAACGCGCTTTGGC
ACTCAGTACTTGCCTCACAGAGACCTGTTGGCATTCAAACCTTCGAGGCC
GCACGGTGCGTTGTTGTGAGCCTCTTCGCGCCGAGTTTGGGGAGCTGGGG
TGCGGTGTGTTCCATCATTCTTGGTCAAATAGGAATATTCCAATTTGAAA
ATATTGCACGATTCTGGTTGGAATTCGTCATGAATTCCAAGCTAGAACTG
GTTGAAATTCCCAACTTGAAATGGTGAATATGCTTTCATATCCGAGGCAT
TCTCGCGCATGATTTCCACTCTAGCTGCCCAAACTTGCTCCGAGAAGTTC
ACAGCAGTGGAGTGTACAGCCTTGACGGTTTGGTAACAAGCAGGCCTCTG
TGAGGCGAGGCCATGGTGACGATGTGCCTTGGTACGCTCTACTTGCTATC
CAGTACGCCGAACTTCCGCTATTTGGGGGTGGTATGGCATTTTCTGTCGA
TCCCCCGGATTCCAAATCGGAAATAATTTCCATAACATGCCTACGGATTA
CATGCAGAAACGGTAGTGACAGAAGAAGCGCGTGTGTTTTGTGTTGTACT
TCGTGTGTGTTTTGTAGAGGGAAGGGGAAGGCTAAGTGTTGATCAATGCG
AACAAAAAGTATGGAGATTTCGCCCACGGAAGGTGGGGAAGGGCTGCACC
TCAGCAGTGAGCGTAACCATGACGGTCCTGTACTATGATCAAAATATATG
GTAGGACCGTCATGGTTACGCTCACTGCTGAGGTGCAGCCCTTCCCCACC
TTCCGTGGGCGAAGTCTCCACACGGATTCGCACTTTGGGCTCGCGCCGAT
TGACATTGCTCGGCCCACACGGATCGTACCCACAGCCGATCACCATCGGC
TTCGAAGACGACGCCTACAGATGTGGCGCGTGCGGCCTTGAAGATTTCGC
GGCGATCCGGCCATAGCACGCTGTGGTGATATGGGGTGGTGATAGGTCTA
CCTCTTGGAAGAACCCGCGTGGGGAGTGTATGCCAATCGTGAAAAACTTT
CGGGCCATTTCTCGTCGACGATAAACGTCAAGCCTAACCGCTAGTTAGGG
CATGCAAAACATGAATACCCCCCTCCCCCCCCCGCCGCGACGGGTTTTGC
TGTATTGTGCGTAGGTGGTGAAGGCGCGCTTCGGCCTTGGCGGGGCCCTT
CCCCGCACGCTGGAGGAGGTCGGGCGGGACTTCCGGCTGACGCGAGAGCG
AGTGCGGCAGATCGAGGCCCGCGCTCTGCACAAGCTCCGGCAGCCGTACC
GAAACTACCGCGTCCGGGACTTCAAGCTGGACCAGATGCTGGTCCAGGCA
GGGGTGCTCGGCCCGCCGAAGGGGGCGATCAAGGCGGCGAGGCAGGCGGT
AGCGGAGGCGGAGGCGGCCGCTAAGAGGAACGAGGTCGCGCTGGTGCACC
AGCGGATGGGCACTGCGCCCGGAGGGGGGAAGCCCGCCGGGGACGTGGGG
ATCACCTCAGAGCTGCAGTCCATCCTTGGCTCCAAGGGGAAGGAGCCGGA
GGAGGAGAAGGAAGGAGATTGGGGGGAGCTGTCTAGTAGTAGCAGACAAG
AGCCTTTGCTGGATGTTGGGCTGAGCGTCGGTGCCGGGGGTGCGAGCGTC
GGCCGCAGGCCGAGGGGGAGACCAGCCAACGAGATGTTGCTGCGAAAGAG
GCTGCGGCAAGAAGTGGCAGAGGAGGAGAAGGAGGAAAAGGAGGAGGAAG
ATGATGCGTTCCTGTTTGAGGACGAATTCGCGAACGAACTTGACAAGCAC
CTCGACGACGACTTCGAAGACGACTTCGAAGACGATCTCGCCGCCGCTGT
TTTCGGGAGCGAAGGGAAGTCGGGGTCGAGGGGGGGAAAGGTATCGATGG
ACGCCGTCCGGACGCTCAACAAGGCGTGGACGAACACGGCGAACAGCTCG
CCGAGAGAGGCCGCCGACCAGCTGTCGATGATGGGCGTGGCGCCGAGGTC
AGCGGACGAGGAGGAGCAGCAGCTTCTCTCGACCCTCGACTCGCTTAACC
TGCTAGACGACGACGACGACGTGGGGGGCCGGGCGGGAGCGGGGGTGTCG
GATTCGAAGGAGGCGATGGACAGACTCCAGAACGAGATGAAGGTAAACCC
AATGGGCTTGGGGGATAGGGCGGCGGCAGCGGCGGCGGCGGCGACGGCTA
CCAGTAGATCGCTGCAGGCCGCGTAGTTGTAGGGGGGGGGCGGGGGGGGG
GCGCCTGGGGGGGGCGATTACCCACGATTCCCCCCTGTTGCTGCCTGCGA
CCGACCAGAACCGGACTATCGAAGGTGGATGACGGGGTGGAGTTCGGTTT
TACGATTGTCGAAAAGAGCGAATAGCGGGTGTGCACGCGTTCTCTGGTTG
GATGGTGGATGTGTCTTGCGATCGATGCGACTGGCTTCCGTTCCATAACC
TATCTGGTCTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1060:20131..26941+

>mRNA_Ecto-sp9_F_contig1060.549.1 ID=mRNA_Ecto-sp9_F_contig1060.549.1|Name=mRNA_Ecto-sp9_F_contig1060.549.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4752bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1060:20131..26941+ (Ectocarpus species9 EcSCA_722f female)
ATGGTTTCTTCCCGGCGAAGAATAACGGTCTGTGTGGTAGGTGCAATGTG
CGCCTCGGCGCCACCAGCTGAGGGCTTCACCCCACCAGTCTGTTTAGATG
GTTTCTTCCCGGCGAAGAATAACGGTCTGTGTGGTAGGTGCAATGTGCGC
CTCGGCGCCACCAGCTGAGGGCTTCACCCCACCAGTCTGTTTAGCGCGTG
TTTGTGGTGCGGAGGACGCGTTCTACTCCGCGGAGCGTCGATTAGCGGCA
GCCTCCGGGGCGGGCAGAGACGGCGGCGGTGGAGGTAGGCGAGGGACGAT
GAGAGGGCGAGAGGCAGCTGCTGCGCCCGTTGCGCGTGGAGCGTTGCCAG
CACCTCCTACAAGAAGAGGGTCGACAGCAGCAGGGTGGATGATGCAACGG
CCCGCCGCAAGTAGGTCAGCAGCAACGAGGATGATGTCTGCCGCCGTCGC
AGCAGAGCCAGTAGAAGAGCTAGACACGCTGCGGCCGCCGCCGCCGCAGC
AGCAGCAGCAGCAGCTGCCCGGGATGCCGTTCGACATGCGCGACGACAGC
GAGTTCTACCTCGAGATGGAGCGAAAGAAGGAGGCCGGACCAACGTACAC
TAGGGACAGCGACATGGTGGGCCTCGGAAAGGTTTCCACAAGAAAGTCGG
CGAAGCGGGACGGGGGCGGCGGCGGCGGAGACGCCCTCGCCTTCTACCTC
CGCACCGTCGCCAAGGTCGACCTCCTCAAGCCCCACGAAGAGATAGTGCT
CGGGCGGCAGATCCAAAAGGGGGTCTCCTACGAAAACACCCGGGATCACC
TCCAGCTCATGCGCGGCTACGAGCCTTCCGAGGAGGAGTGGGCGGTCGCT
CTCGGCATGGACCGGGAGGAGCTGGTGAAGGAGCTCAGCAGGGCGAGCAA
GGCAAAGATGGCCATGCTGGCCGCGAACCTGAGGCTCGTCGTTAGCGTCG
CCAAGCGGTACCGCTTCCAGAAGCTGAGCTTCCAGGACCTTATACAGGAG
GGGACGTTCGGCCTCGTGAAGGCGGCGGAGAAGTTTGACCCCGAGAGGGG
GTTCAAGTTCTCCACCTACGCCACCTGGTGGATCAAGCAGAGCATCATGC
GGGGCATCGCCGACCAGCGCGTGTTTGTGGTGCGGAGGACGCGTTCTACT
CCGCGGAGCGTCGATTAGCGGCAGCCTCCGGGGCGGGCAGAGACGGCGGC
GGTGGAGGTAGGCGAGGGACGATGAGAGGGCGAGAGGCAGCTGCTGCGCC
CGTTGCGCGTGGAGCGTTGCCAGCACCTCCTACAAGAAGAGGGTCGACAG
CAGCAGGGTGGATGATGCAACGGCCCGCCGCAAGTAGGTCAGCAGCAACG
AGGATGATGTCTGCCGCCGTCGCAGCAGAGCCAGTAGAAGAGCTAGACAC
GCTGCGGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCTGCCCGGGATGC
CGTTCGACATGCGCGACGACAGCGAGTTCTACCTCGAGATGGAGCGAAAG
AAGGAGGCCGGACCAACGTACACTAGGGACAGCGACATGGTGGGCCTCGG
AAAGGTTTCCACAAGAAAGTCGGCGAAGCGGGACGGGGGCGGCGGCGGCG
GAGACGCCCTCGCCTTCTACCTCCGCACCGTCGCCAAGGTCGACCTCCTC
AAGCCCCACGAAGAGATAGTGCTCGGGCGGCAGATCCAAAAGGGGGTCTC
CTACGAAAACACCCGGGATCACCTCCAGCTCATGCGCGGCTACGAGCCTT
CCGAGGAGGAGTGGGCGGTCGCTCTCGGCATGGACCGGGAGGAGCTGGTG
AAGGAGCTCAGCAGGGCGAGCAAGGCAAAGATGGCCATGCTGGCCGCGAA
CCTGAGGCTCGTCGTTAGCGTCGCCAAGCGGTACCGCTTCCAGAAGCTGA
GCTTCCAGGACCTTATACAGGAGGGGACGTTCGGCCTCGTGAAGGCGGCG
GAGAAGTTTGACCCCGAGAGGGGGTTCAAGTTCTCCACCTACGCCACCTG
GTGGATCAAGCAGAGCATCATGCGGGGCATCGCCGACCAGAGCCGAATTA
TCCGGCTGCCGGTGCACGTGCACGACTTCCTGAACCGGGTCCGGAAGGCC
ACGCTCGAGATGACGGATAAGAACGGAAAGCTTCCCACCGACGAGGAGCT
GGCCGAGCACCTAGAGGTTTCGGCGGTTAGAATTCAGAGCCGAATTATCC
GGCTGCCGGTGCACGTGCACGACTTCCTGAACCGGGTCCGGAAGGCCACG
CTCGAGATGACGGATAAGAACGGAAAGCTTCCCACCGACGAGGAGCTGGC
CGAGCACCTAGAGGTTTCGGCGGTTAGAATTCAGTACTACCGCGACGCCG
CTCAGGCGACCCTGAGTATGGAGGCCCCTCGGAACATCGCTTCCAAGACT
TCCACCTCCCCTGGCAAGAAGGTGGAAATGGGGCAGGGTGTCTCTGGTCC
GGAGAAGACTCCCGACAAGCAGGCGCAGAGCGACGTCATGAAGCAGAAGG
TCACGGAGCTGCTGATGACGTTGAGCATCAGGGAGCAAGAGTACTACCGC
GACGCCGCTCAGGCGACCCTGAGTATGGAGGCCCCTCGGAACATCGCTTC
CAAGACTTCCACCTCCCCTGGCAAGAAGGTGGAAATGGGGCAGGGTGTCT
CTGGTCCGGAGAAGACTCCCGACAAGCAGGCGCAGAGCGACGTCATGAAG
CAGAAGGTCACGGAGCTGCTGATGACGTTGAGCATCAGGGAGCAAGAGGT
GGTGAAGGCGCGCTTCGGCCTTGGCGGGGCCCTTCCCCGCACGCTGGAGG
AGGTCGGGCGGGACTTCCGGCTGACGCGAGAGCGAGTGCGGCAGATCGAG
GCCCGCGCTCTGCACAAGCTCCGGCAGCCGTACCGAAACTACCGCGTCCG
GGACTTCAAGCTGGACCAGATGCTGGTCCAGGCAGGGGTGCTCGGCCCGC
CGAAGGGGGCGATCAAGGCGGCGAGGCAGGCGGTAGCGGAGGCGGAGGCG
GCCGCTAAGAGGAACGAGGTCGCGCTGGTGCACCAGCGGATGGGCACTGC
GCCCGGAGGGGGGAAGCCCGCCGGGGACGTGGGGATCACCTCAGAGCTGC
AGTCCATCCTTGGCTCCAAGGGGAAGGAGCCGGAGGAGGAGAAGGAAGGA
GATTGGGGGGAGCTGTCTAGTAGTAGCAGACAAGAGCCTTTGCTGGATGT
TGGGCTGAGCGTCGGTGCCGGGGGTGCGAGCGTCGGCCGCAGGCCGAGGG
GGAGACCAGCCAACGAGATGTTGCTGCGAAAGAGGCTGCGGCAAGAAGTG
GCAGAGGAGGAGAAGGAGGAAAAGGAGGAGGAAGATGATGCGTTCCTGTT
TGAGGACGAATTCGCGAACGAACTTGACAAGCACCTCGACGACGACTTCG
AAGACGACTTCGAAGACGATCTCGCCGCCGCTGTTTTCGGGAGCGAAGGG
AAGTCGGGGTCGAGGGGGGGAAAGGTATCGATGGACGCCGTCCGGACGCT
CAACAAGGCGTGGACGAACACGGCGAACAGCTCGCCGAGAGAGGCCGCCG
ACCAGCTGTCGATGATGGGCGTGGCGCCGAGGTCAGCGGACGAGGAGGAG
CAGCAGCTTCTCTCGACCCTCGACTCGCTTAACCTGCTAGACGACGACGA
CGACGTGGGGGGCCGGGCGGGAGCGGGGGTGTCGGATTCGAAGGAGGCGA
TGGACAGACTCCAGAACGAGATGAAGGTGGTGAAGGCGCGCTTCGGCCTT
GGCGGGGCCCTTCCCCGCACGCTGGAGGAGGTCGGGCGGGACTTCCGGCT
GACGCGAGAGCGAGTGCGGCAGATCGAGGCCCGCGCTCTGCACAAGCTCC
GGCAGCCGTACCGAAACTACCGCGTCCGGGACTTCAAGCTGGACCAGATG
CTGGTCCAGGCAGGGGTGCTCGGCCCGCCGAAGGGGGCGATCAAGGCGGC
GAGGCAGGCGGTAGCGGAGGCGGAGGCGGCCGCTAAGAGGAACGAGGTCG
CGCTGGTGCACCAGCGGATGGGCACTGCGCCCGGAGGGGGGAAGCCCGCC
GGGGACGTGGGGATCACCTCAGAGCTGCAGTCCATCCTTGGCTCCAAGGG
GAAGGAGCCGGAGGAGGAGAAGGAAGGAGATTGGGGGGAGCTGTCTAGTA
GTAGCAGACAAGAGCCTTTGCTGGATGTTGGGCTGAGCGTCGGTGCCGGG
GGTGCGAGCGTCGGCCGCAGGCCGAGGGGGAGACCAGCCAACGAGATGTT
GCTGCGAAAGAGGCTGCGGCAAGAAGTGGCAGAGGAGGAGAAGGAGGAAA
AGGAGGAGGAAGATGATGCGTTCCTGTTTGAGGACGAATTCGCGAACGAA
CTTGACAAGCACCTCGACGACGACTTCGAAGACGACTTCGAAGACGATCT
CGCCGCCGCTGTTTTCGGGAGCGAAGGGAAGTCGGGGTCGAGGGGGGGAA
AGGTATCGATGGACGCCGTCCGGACGCTCAACAAGGCGTGGACGAACACG
GCGAACAGCTCGCCGAGAGAGGCCGCCGACCAGCTGTCGATGATGGGCGT
GGCGCCGAGGTCAGCGGACGAGGAGGAGCAGCAGCTTCTCTCGACCCTCG
ACTCGCTTAACCTGCTAGACGACGACGACGACGTGGGGGGCCGGGCGGGA
GCGGGGGTGTCGGATTCGAAGGAGGCGATGGACAGACTCCAGAACGAGAT
GAAGAACCGGACTATCGAAGGTGGATGAAACCGGACTATCGAAGGTGGAT
GA
back to top