prot_Ecto-sp9_F_contig1048.456.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig1048.456.1
Unique Name	prot_Ecto-sp9_F_contig1048.456.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	240

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1048.456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ88_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 3.250e-153
Identity = 221/239 (92.47%), Postives = 222/239 (92.89%), Query Frame = 0

Query:    1 MPPRQRLPVINPSAEPAPKYGRQQHGARRTSFWKSESDQYWEKCRHNNKRSRQRKAVGLTVXXXXXXXXXXAAGLRGRRTEPVVEEEVATSSLDRTGELTTSSLEEAAPADDSGITNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ 239
            MPPRQRLPVI+PSAEPAPKYGR QHGARRTSFWKSESDQYWEKCRHN  RSRQRKAVGLT           AAGLRGRRTEPVVEEE ATSSLDRTGEL TSSLEEAAPADDSG TNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ
Sbjct:    1 MPPRQRLPVISPSAEPAPKYGRHQHGARRTSFWKSESDQYWEKCRHNT-RSRQRKAVGLTAVVVVVSLLLLAAGLRGRRTEPVVEEEGATSSLDRTGELITSSLEEAAPADDSGNTNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ 238

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1048.456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.930e-12
Identity = 35/118 (29.66%), Postives = 62/118 (52.54%), Query Frame = 0

Query:  125 ACVGSGKKHELESKT-CAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGG-----RHRDCVRESTERCDFH---CASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFAS 233
            +C  S  +  + +K  C+ +CA+AR +  +PLAHR+C+ GC  G    WD  C  G       +   ++++ R D     C+++RN +P+P + NQC   C +     C ++K+ F +
Sbjct:  137 SCSASRGEASMAAKALCSNLCARARFSGSKPLAHRACMVGCEGGSMAGWDAGCGSGPASASETQVVCKQASARLDCRGTVCSAFRNAYPRPAVINQCTSGCAEAAFQGCSRAKDFFGN 254

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1048.456.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1048.456.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	3.250e-153	92.47	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	7.930e-12	29.66	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..55
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 76..239
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 56..75
None	No IPR available	TMHMM	TMhelix		coord: 56..75

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1048	contig	Ecto-sp9_F_contig1048:20775..23229 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1048.456.1	mRNA_Ecto-sp9_F_contig1048.456.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig1048 20775..23229 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig1048.456.1 ID=prot_Ecto-sp9_F_contig1048.456.1|Name=mRNA_Ecto-sp9_F_contig1048.456.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=240bp
MPPRQRLPVINPSAEPAPKYGRQQHGARRTSFWKSESDQYWEKCRHNNKR
SRQRKAVGLTVVVVVVSLLLLAAGLRGRRTEPVVEEEVATSSLDRTGELT
TSSLEEAAPADDSGITNGLRLKTLACVGSGKKHELESKTCAKVCAKARTT
APRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYR
NQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ*