mRNA_Ecto-sp9_F_contig1048.456.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1048.456.1
Unique NamemRNA_Ecto-sp9_F_contig1048.456.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1048.456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ88_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 3.250e-153
Identity = 221/239 (92.47%), Postives = 222/239 (92.89%), Query Frame = 1 
Query:    1 MPPRQRLPVINPSAEPAPKYGRQQHGARRTSFWKSESDQYWEKCRHNNKRSRQRKAVGLTVXXXXXXXXXXAAGLRGRRTEPVVEEEVATSSLDRTGELTTSSLEEAAPADDSGITNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ 717
            MPPRQRLPVI+PSAEPAPKYGR QHGARRTSFWKSESDQYWEKCRHN  RSRQRKAVGLT           AAGLRGRRTEPVVEEE ATSSLDRTGEL TSSLEEAAPADDSG TNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ
Sbjct:    1 MPPRQRLPVISPSAEPAPKYGRHQHGARRTSFWKSESDQYWEKCRHNT-RSRQRKAVGLTAVVVVVSLLLLAAGLRGRRTEPVVEEEGATSSLDRTGELITSSLEEAAPADDSGNTNGLRLKTLACVGSGKKHELESKTCAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ 238
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BLAST of mRNA_Ecto-sp9_F_contig1048.456.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.930e-12
Identity = 35/118 (29.66%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:  373 ACVGSGKKHELESKT-CAKVCAKARTTAPRPLAHRSCLAGCRAGVTTAWDTACVGG-----RHRDCVRESTERCDFH---CASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFAS 699
            +C  S  +  + +K  C+ +CA+AR +  +PLAHR+C+ GC  G    WD  C  G       +   ++++ R D     C+++RN +P+P + NQC   C +     C ++K+ F +
Sbjct:  137 SCSASRGEASMAAKALCSNLCARARFSGSKPLAHRACMVGCEGGSMAGWDAGCGSGPASASETQVVCKQASARLDCRGTVCSAFRNAYPRPAVINQCTSGCAEAAFQGCSRAKDFFGN 254
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1048.456.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.250e-15392.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.930e-1229.66protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1048contigEcto-sp9_F_contig1048:20775..23229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007040.1
Exons4
Model size720
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1048.456.1prot_Ecto-sp9_F_contig1048.456.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1048 20775..23229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928259.0738363-CDS-Ecto-sp9_F_contig1048:20774..209591622928259.0738363-CDS-Ecto-sp9_F_contig1048:20774..20959Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 20775..20959 -
1692277812.413926-CDS-Ecto-sp9_F_contig1048:20774..209591692277812.413926-CDS-Ecto-sp9_F_contig1048:20774..20959Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 20775..20959 -
1622928259.0933006-CDS-Ecto-sp9_F_contig1048:21199..212761622928259.0933006-CDS-Ecto-sp9_F_contig1048:21199..21276Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 21200..21276 -
1692277812.4263682-CDS-Ecto-sp9_F_contig1048:21199..212761692277812.4263682-CDS-Ecto-sp9_F_contig1048:21199..21276Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 21200..21276 -
1622928259.1092546-CDS-Ecto-sp9_F_contig1048:21881..220851622928259.1092546-CDS-Ecto-sp9_F_contig1048:21881..22085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 21882..22085 -
1692277812.4405437-CDS-Ecto-sp9_F_contig1048:21881..220851692277812.4405437-CDS-Ecto-sp9_F_contig1048:21881..22085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 21882..22085 -
1622928259.1257772-CDS-Ecto-sp9_F_contig1048:22975..232291622928259.1257772-CDS-Ecto-sp9_F_contig1048:22975..23229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 22976..23229 -
1692277812.4537175-CDS-Ecto-sp9_F_contig1048:22975..232291692277812.4537175-CDS-Ecto-sp9_F_contig1048:22975..23229Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1048 22976..23229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1048.456.1

>prot_Ecto-sp9_F_contig1048.456.1 ID=prot_Ecto-sp9_F_contig1048.456.1|Name=mRNA_Ecto-sp9_F_contig1048.456.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=240bp
MPPRQRLPVINPSAEPAPKYGRQQHGARRTSFWKSESDQYWEKCRHNNKR
SRQRKAVGLTVVVVVVSLLLLAAGLRGRRTEPVVEEEVATSSLDRTGELT
TSSLEEAAPADDSGITNGLRLKTLACVGSGKKHELESKTCAKVCAKARTT
APRPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYR
NQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ*
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mRNA from alignment at Ecto-sp9_F_contig1048:20775..23229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1048.456.1 ID=mRNA_Ecto-sp9_F_contig1048.456.1|Name=mRNA_Ecto-sp9_F_contig1048.456.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2455bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:20775..23229- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCCAAGACAGAGGCTGCCGGTCATCAATCCTTCGGCAGAACCAGC
GCCAAAGTACGGACGGCAGCAGCACGGCGCACGAAGAACATCGTTCTGGA
AGTCCGAGTCTGATCAATACTGGGAAAAATGTCGACACAACAACAAGCGA
TCTAGGCAGAGAAAGGCCGTGGGGCTGACAGTTGTTGTTGTGGTGGTGAG
CCTGTTGTTGCTGGCGGCTGGACTGAGAGGGCGAAGAACAGAGCCGGTCG
TGGAGTGAGTGTTGTCGTCCTGTGCACAGATAGATGCATGCGTCGGTCAG
TACGGCACATGCGGGGCACATCAGGGTTAGAAGTAGCACCTATGCTGTAT
AGATTGATGTTGTAGACTATGTAGCATGGTTGAACTACATGAAGAGCAAT
GAGTGAAATGTCATCCGGTCCAGTCCACTGGAGTACACAACAAGTTACGT
TCGTTCCCAATGACTACGGTATGACGCCTGGTTTGCTGTAGTTGTAGGTC
TCCGCGTTGTACTGCCGAGATACCCACAACGAGGAATGGCTGCATTCGCC
AACTGCAGTACATGATATCACATCAATCCCTACCAAAGCGCATGTAATTG
TTCTACATGCGCGCATCAGAACGATTTCCCTCTCATATTTGGCTGAGCAT
TCGTCTACACTACACAGTGGATATTGGTGTCATCTAGTCACACAGCTGCA
GGGATTGGCCGAACGATACTTACTTGCAGTCAAATTGCCGGCTCGTCTTG
GTCGTCCACCTTGGAATGATAGCGGCTTAATGGAATTTCCAGGCATAGGC
ATAGAACCTCCCACCTAAACGGGACTCAAAGGGGTCGGGTCGATCATGTC
TTGAAGCCTTTTAGCCATACAAATACGAGGGTTCTTGAGGCCGACCAACA
TCAGTATTTGTTTCTCGAGGCCGGTGTGGTGTCGGACACCGATTGTTCAT
GAACAGGTGAACACGAAATACGCCAAACTAAGGAACTAGACTAAAAATTA
AGCTGACGACTCGTGAATCTCAATTGTCCTGGTTACAACGTTACAATCGA
CTGCTGCTGCTCGCGTATCGACACAAGAAACTTGCAGATCGTGTCGTAAA
CCTGCTTGATGCTGCATCTTTTGTCGACTGCCATATCGTACCAGAGAGGA
GGTGGCAACAAGTTCTTTAGATCGTACCGGGGAGTTGACAACAAGTTCTT
TAGAAGAAGCGGCGCCAGCCGATGATAGTGGGATTACGAACGGCTTGCGG
CTGAAGACACTGGCGTGCGTCGGAAGCGGGAAAAAACATGAGCTGGAGAG
CAAAACGTGTGCAAAGGTGTGCGCGAAAGCTCGTACCACAGCACCAAGGT
AAATGCCGTGTCTCTGGTACAATATTGACGCTCCCAATCACTTCTTCGAG
CCGCGTTACACAAAGAGTCAATCATCTACTATGATGCTTTGGTTGCAAAC
CGGGAACCACCCATTGCTGTGTAGGATGTCGGTCTAAATGTCATTCTCAG
TGGGCAGCATCGCGGCGCCTCAAAGATCAGTAAAAAGAGAAACGTCAAAT
TTGACGTGTTCCTCACCCGTCGGTCAAGCCCTGAAAGACTGCACTTTCGG
TGTATTTCATCTTATCAACGGTCACTAGAGGATAAGTAGTCTATTGGCTG
CGAAGAAGACACATGAAACCGCTCAGATCTGGCGACATACAGCAACTTAT
CGACAGGAAAACGCCTCACTCAGTAGTATGAGATGACCAAGTAGACGCTT
CAAGCTTAGGCGTACGTATATGGGAGGCATTGGCACTTTACTCCATGCTT
CCTGATACGTAGGTTCTTGAGAGACACCGGAGGGAATGGGGGCCAGCAAG
AAACATTCACGAGTCGCGTTCACCGTTACTGTCGCACACGAGGAACGATC
GCTCACACCTTGGTGAATGCATCTTCCGACGACAATGTCAACAAACATCG
CAGACCCCTCGCCCATCGATCGTGTTTGGCTGGGTGCCGGGCGGGAGTCA
CAACGGCATGGGATACGGCATGTGTTGGAGGTGGGTCGCGCCGCCACACA
GGGGTTCATTGTCGATATTTACTTGTAAAGAACCCATTGAGTGAGGGGCC
CAACTGAACTCTGCAGAGCTCATTCAAATAAGGGGTCATTTCGCCAAAGA
AAGGGGTTATTCAGCTCTGAATCAGAATTACATTTTAGCACAGACATCTC
TCGTCGGCAGATTAAATGTATTACAGCACAAAACATTAATGTTTTCCTTC
TCTCACGACTCGCGGCTCAGGTCGCCACCGCGATTGTGTCAGGGAATCGA
CGGAGCGGTGCGACTTCCACTGCGCGAGCTATCGAAACCAGTTCCCCAAG
CCAACCATTTTCAACCAGTGCCTGCGCTCCTGCCTTGACGTTGTGGACAC
CACGTGTCTGAAGTCGAAGGAGGTGTTTGCTTCGGCAGAGACGTTCGATC
AGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1048:20775..23229-

>mRNA_Ecto-sp9_F_contig1048.456.1 ID=mRNA_Ecto-sp9_F_contig1048.456.1|Name=mRNA_Ecto-sp9_F_contig1048.456.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1440bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1048:20775..23229- (Ectocarpus species9 EcSCA_722f female)
ATGCCGCCAAGACAGAGGCTGCCGGTCATCAATCCTTCGGCAGAACCAGC
GCCAAAGTACGGACGGCAGCAGCACGGCGCACGAAGAACATCGTTCTGGA
AGTCCGAGTCTGATCAATACTGGGAAAAATGTCGACACAACAACAAGCGA
TCTAGGCAGAGAAAGGCCGTGGGGCTGACAGTTGTTGTTGTGGTGGTGAG
CCTGTTGTTGCTGGCGGCTGGACTGAGAGGGCGAAGAACAGAGCCGGTCG
TGGAATGCCGCCAAGACAGAGGCTGCCGGTCATCAATCCTTCGGCAGAAC
CAGCGCCAAAGTACGGACGGCAGCAGCACGGCGCACGAAGAACATCGTTC
TGGAAGTCCGAGTCTGATCAATACTGGGAAAAATGTCGACACAACAACAA
GCGATCTAGGCAGAGAAAGGCCGTGGGGCTGACAGTTGTTGTTGTGGTGG
TGAGCCTGTTGTTGCTGGCGGCTGGACTGAGAGGGCGAAGAACAGAGCCG
GTCGTGGAAGAGGAGGTGGCAACAAGTTCTTTAGATCGTACCGGGGAGTT
GACAACAAGTTCTTTAGAAGAAGCGGCGCCAGCCGATGATAGTGGGATTA
CGAACGGCTTGCGGCTGAAGACACTGGCGTGCGTCGGAAGCGGGAAAAAA
CATGAGCTGGAGAGCAAAACGTGTGCAAAGGTGTGCGCGAAAGCTCGTAC
CACAGCACCAAGAGAGGAGGTGGCAACAAGTTCTTTAGATCGTACCGGGG
AGTTGACAACAAGTTCTTTAGAAGAAGCGGCGCCAGCCGATGATAGTGGG
ATTACGAACGGCTTGCGGCTGAAGACACTGGCGTGCGTCGGAAGCGGGAA
AAAACATGAGCTGGAGAGCAAAACGTGTGCAAAGGTGTGCGCGAAAGCTC
GTACCACAGCACCAAGACCCCTCGCCCATCGATCGTGTTTGGCTGGGTGC
CGGGCGGGAGTCACAACGGCATGGGATACGGCATGTGTTGGAGACCCCTC
GCCCATCGATCGTGTTTGGCTGGGTGCCGGGCGGGAGTCACAACGGCATG
GGATACGGCATGTGTTGGAGGTCGCCACCGCGATTGTGTCAGGGAATCGA
CGGAGCGGTGCGACTTCCACTGCGCGAGCTATCGAAACCAGTTCCCCAAG
CCAACCATTTTCAACCAGTGCCTGCGCTCCTGCCTTGACGTTGTGGACAC
CACGTGTCTGAAGTCGAAGGAGGTGTTTGCTTCGGCAGAGACGTTCGATC
AGTGAGTCGCCACCGCGATTGTGTCAGGGAATCGACGGAGCGGTGCGACT
TCCACTGCGCGAGCTATCGAAACCAGTTCCCCAAGCCAACCATTTTCAAC
CAGTGCCTGCGCTCCTGCCTTGACGTTGTGGACACCACGTGTCTGAAGTC
GAAGGAGGTGTTTGCTTCGGCAGAGACGTTCGATCAGTGA
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