prot_Ecto-sp9_F_contig10457.436.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10457.436.1
Unique Nameprot_Ecto-sp9_F_contig10457.436.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length83
Homology
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN1_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 8.470e-47
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 82
            ASCGDDSNVRVSDLRSSSSFGVSQRLDG+HGGRACHTVRWHPLD NLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR
Sbjct:  582 ASCGDDSNVRVSDLRSSSSFGVSQRLDGVHGGRACHTVRWHPLDDNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 663          
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U5_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 8.550e-45
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 82
            ASCGDDSNVRVSDLRSSSS GVSQRLDG+HGGRACHTVRWHPLD N LLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR
Sbjct:  705 ASCGDDSNVRVSDLRSSSSVGVSQRLDGVHGGRACHTVRWHPLDDNRLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 786          
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: WD40-repeat-containing (domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.150e-18
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR 82
            ASCGDD++VRV D+R++  + ++  L+ +H   A HTVRWHP D +LLL+AGLD+ V L+DLR+  A    +RGH P+AL R
Sbjct:  438 ASCGDDASVRVCDIRAARGYYIAVGLEDVHSACA-HTVRWHPTDEHLLLTAGLDTVVKLFDLRKPNAAAVEYRGHVPFALPR 518          
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLP2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.250e-9
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 0
Query:   36 HTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGHCPYALA 81
            H+V WHP   +LLL+AG DS V L+DLR L APL  F  H P ALA
Sbjct:   29 HSVEWHPCSKDLLLTAGFDSVVRLWDLRHLGAPLRCFDDHVPKALA 74          
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Hypothetical (protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E491_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 8.860e-8
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0
Query:    1 ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGH 75
            AS G+D ++ +SDLR+S   G  Q +       A + + + P DG LLL+AG +  +++YDLR +AAPL   RGH
Sbjct:   10 ASAGNDRDIHLSDLRASGGGGAMQTVTDALAS-AINVLEFSP-DGTLLLAAGFEDVIHVYDLRHMAAPLASLRGH 82          
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GSK6_9ALVE)

HSP 1 Score: 53.1 bits (126), Expect = 3.150e-6
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0
Query:   30 HGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRLAAPLHVFRGH 75
            H G+AC+++ + P    L+ + G D  VNL+DLR+L+AP+HV  GH
Sbjct:  270 HKGKACNSLAFSPFISTLIATGGEDQVVNLWDLRKLSAPMHVLEGH 315          
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Hypothetical (protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G2Y9_9EUGL)

HSP 1 Score: 50.4 bits (119), Expect = 2.910e-5
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0
Query:    2 SCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRR--LAAPLHVFRGH 75
            S G+D +VRV+DLR  S   V Q      G    ++  W P DG+L++SAG+D T+ L+D R+   + PLH  +GH
Sbjct:  597 STGNDYSVRVTDLRILSQGSVLQW----EGNSVINSCSWQP-DGSLIMSAGIDHTIKLWDPRKGSNSPPLHTLKGH 667          
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Match: Uncharacterized (protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FDT0_ASPOF)

HSP 1 Score: 48.9 bits (115), Expect = 9.910e-5
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    2 SCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLSAGLDSTVNLYDLRRL-----AAPLHVFRGH 75
            S GDDS + + D R  S  G + +++  H G   H V W+  D NL+L+   DS+V L+D R+L      +PLH+F GH
Sbjct:  282 SVGDDSCLILWDARVGS--GPAIKVEKAHNGDL-HCVDWNRHDENLILTGSADSSVRLFDRRKLISGAVGSPLHIFEGH 357          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10457.436.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized8.470e-4797.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.550e-4595.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WD40-repeat-containing7.150e-1851.22domain protein n=1 Tax=Tribonema minus TaxID=30337... [more]
Hypothetical2.250e-958.70protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
Hypothetical8.860e-841.33protein n=1 Tax=Chloropicon laureae TaxID=464258 R... [more]
Uncharacterized3.150e-645.65protein (Fragment) n=1 Tax=Chromera velia CCMP2878... [more]
Hypothetical2.910e-540.79protein n=1 Tax=Eutreptiella gymnastica TaxID=7302... [more]
Uncharacterized9.910e-539.24protein n=2 Tax=Asparagus officinalis TaxID=4686 R... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..78
e-value: 2.8E-15
score: 58.3
NoneNo IPR availablePANTHERPTHR22850WD40 REPEAT FAMILYcoord: 1..75
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 1..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10457contigEcto-sp9_F_contig10457:338..586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10457.436.1mRNA_Ecto-sp9_F_contig10457.436.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10457 338..586 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10457.436.1 ID=prot_Ecto-sp9_F_contig10457.436.1|Name=mRNA_Ecto-sp9_F_contig10457.436.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=83bp
ASCGDDSNVRVSDLRSSSSFGVSQRLDGIHGGRACHTVRWHPLDGNLLLS
AGLDSTVNLYDLRRLAAPLHVFRGHCPYALAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf