prot_Ecto-sp9_F_contig104.387.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig104.387.1
Unique Name	prot_Ecto-sp9_F_contig104.387.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	146

Homology

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: Similar (to F-box-containing protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3M2_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 9.970e-94
Identity = 137/144 (95.14%), Postives = 142/144 (98.61%), Query Frame = 0

Query:    1 LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            +CLSDAVLDLALGYLDSDSLVACQATCRAVG+AAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVA+WWAGVEAWMSRNLPEV+ TLN GVSE+ELDTAEEALGWPLPTHLRLLYRFHNGQ
Sbjct:    1 MCLSDAVLDLALGYLDSDSLVACQATCRAVGNAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAMWWAGVEAWMSRNLPEVLGTLNAGVSEQELDTAEEALGWPLPTHLRLLYRFHNGQ 144

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X6_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 9.530e-62
Identity = 122/208 (58.65%), Postives = 126/208 (60.58%), Query Frame = 0

Query:    1 LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQS-------------------------------------------------------DDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHP-------ADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQAS 146
            LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQS                                                       DDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHP       ADV R+        +     +P V   +  GVSEEELDTAEEALGWPLPTHLRLLYRFHNGQAS
Sbjct:   52 LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSAGVRPDLSIPAFGDICARLVPKNICCAFTFEVFLSSDDEVFVLHSNSTCPTCLLTDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPRLNFLPPADVVRIGTGCGAEFSPFLCRIPRVSLNVRVGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQAS 259

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3IR04_BRADI)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-20
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 0

Query:    3 LSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            L   +LD  +    + +  A   T   + +A   D +WR  C +D G +  + PE R   + +F ++++AW  +F  Y    VKRV ++W  +++W+S N PE + TLN GVSE ++ +AE+ LG+ LP   +LLYRF NGQ
Sbjct:   44 LEGLILDTVISKAGARTAAALACTSTHLRTAVDEDAVWRRFCAQDLGLDAPLDPEDRP--LPSFKDAYKAWLVSFGMYPLPLVKRVKLFWTSLKSWLSENFPEALRTLNKGVSEAQIRSAEDDLGFKLPMPTKLLYRFCNGQ 183

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XR25_9ORYZ)

HSP 1 Score: 92.4 bits (228), Expect = 3.750e-19
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 0

Query:    3 LSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            L    LD  +    +   VA     + +  AA  D LWR  C +D G       +     + +F ++++ W  +F  Y    V+RV  +WA +++W+S N PE + TLN GVSE ++ +AE+ LG+ LP   +LLYRF NGQ
Sbjct:   16 LEGLALDTVIAKAGASHAVALACASKRLRDAAGDDALWRRFCADDLGLRGDAPLDPDGRPLPSFKDAYKVWMESFGMYPLPLVRRVKNFWASLKSWLSENFPEALKTLNKGVSEAQIQSAEDDLGFKLPMPTKLLYRFCNGQ 157

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=20 Tax=Oryza TaxID=4527 RepID=I1QZ65_ORYGL)

HSP 1 Score: 92.4 bits (228), Expect = 4.230e-19
Identity = 47/124 (37.90%), Postives = 76/124 (61.29%), Query Frame = 0

Query:   21 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            +AC +T   +  AA  D LWR  C +D      + P+ R+  + +F ++++ W  +F  Y    V+RV ++W+ +++W+S N PE + TLN GVSE ++ +AE+ LG+ LP   +LLYRF NGQ
Sbjct:   72 LACAST--RLRDAAGDDALWRHFCADDLALHAPLAPDGRA--LPSFKDAYKVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEALKTLNKGVSEAQIQSAEDDLGFKLPLPTKLLYRFCNGQ 191

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: F-box (protein SKIP16 n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5W6S7_9POAL)

HSP 1 Score: 89.7 bits (221), Expect = 3.510e-18
Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 0

Query:   21 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            +AC +T   + +A   D LWR  C ED G +  V PE R   + +F  +++ W  +F  Y    VKRV  +W  +++W+S N PE   TL  GVSE +L +AEE LG+ LP   +LLYRF N Q
Sbjct:   42 LACAST--RLRAAVADDSLWRRFCAEDLGLDAPVDPEGRP--LPSFQVAYKVWLESFGMYPLPLVKRVKEFWNSMKSWLSENFPEAAKTLCKGVSEAQLKSAEEDLGFKLPMPTKLLYRFCNAQ 161

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: Uncharacterized (protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804NL46_MAIZE)

HSP 1 Score: 88.2 bits (217), Expect = 4.880e-18
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 0

Query:   21 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            +AC +T   + +A   D LWR  C ED G +  V PE R   + +F  +++ W  +F  Y    VKRV  +W  ++ W+S N PE   TL  GVSE +L +AE+ LG+ LP   +LLYRF N Q
Sbjct:   39 LACAST--RLRTAVADDSLWRRFCGEDLGLDAPVDPEGRP--LPSFQVAYKVWSESFGMYPLPMVKRVRQFWTSMKTWLSENFPEAYKTLCEGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 158

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: Uncharacterized (protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804NL47_MAIZE)

HSP 1 Score: 88.2 bits (217), Expect = 5.990e-18
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 0

Query:   21 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            +AC +T   + +A   D LWR  C ED G +  V PE R   + +F  +++ W  +F  Y    VKRV  +W  ++ W+S N PE   TL  GVSE +L +AE+ LG+ LP   +LLYRF N Q
Sbjct:   39 LACAST--RLRTAVADDSLWRRFCGEDLGLDAPVDPEGRP--LPSFQVAYKVWSESFGMYPLPMVKRVRQFWTSMKTWLSENFPEAYKTLCEGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 158

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=9 Tax=Andropogoneae TaxID=147429 RepID=C5Y205_SORBI)

HSP 1 Score: 88.2 bits (217), Expect = 1.210e-17
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 0

Query:   21 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            +AC +T   + +A   D LWR  C ED G +  V PE   + + +F  +++ W  +F  Y    VKRV  +W  ++ W+S N PE   TL  GVSE +L +AE+ LG+ LP   +LLYRF N Q
Sbjct:   39 LACAST--RLRTAVADDSLWRRFCAEDLGLDAPVDPE--GQPLPSFQVAYKVWLESFGMYPLPMVKRVKQFWTSMKTWLSENFPEAYKTLCKGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 158

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BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=4 Tax=Setaria TaxID=4554 RepID=K3ZIF4_SETIT)

HSP 1 Score: 87.4 bits (215), Expect = 2.300e-17
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 0

Query:   32 SAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 144
            +A   D LWR  C +D G +  V PE R   + +F  +++ W  +F  Y  + VKRV  +W  ++ W+S N PE   TL  GVSE +L +AE+ LG+ LP   +LLYRF N Q
Sbjct:   49 AAVADDSLWRRFCADDLGLDAPVDPEGRP--LPSFQVAYKVWLESFGMYPLSLVKRVKEFWGSMKKWLSENFPEAAKTLCKGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 159

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Similar	9.970e-94	95.14	to F-box-containing protein 2 n=1 Tax=Ectocarpus s...	[more]
ApaG	9.530e-62	58.65	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
ApaG	1.270e-20	35.92	domain-containing protein n=2 Tax=Brachypodium dis...	[more]
ApaG	3.750e-19	34.51	domain-containing protein n=1 Tax=Leersia perrieri...	[more]
ApaG	4.230e-19	37.90	domain-containing protein n=20 Tax=Oryza TaxID=452...	[more]
F-box	3.510e-18	41.13	protein SKIP16 n=1 Tax=Dichanthelium oligosanthes ...	[more]
Uncharacterized	4.880e-18	40.32	protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804NL...	[more]
Uncharacterized	5.990e-18	40.32	protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804NL...	[more]
ApaG	1.210e-17	39.52	domain-containing protein n=9 Tax=Andropogoneae Ta...	[more]
ApaG	2.300e-17	40.71	domain-containing protein n=4 Tax=Setaria TaxID=45...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..92 e-value: 8.1E-8 score: 34.1
None	No IPR available	PANTHER	PTHR47463	FAMILY NOT NAMED	coord: 4..145
None	No IPR available	SUPERFAMILY	160631	SMI1/KNR4-like	coord: 104..144
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 1..44 e-value: 1.3E-4 score: 21.7
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..71

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig104	contig	Ecto-sp9_F_contig104:3905..5637 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig104.387.1	mRNA_Ecto-sp9_F_contig104.387.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig104 3904..5637 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig104.387.1 ID=prot_Ecto-sp9_F_contig104.387.1|Name=mRNA_Ecto-sp9_F_contig104.387.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=146bp
LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGE
ERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMS
RNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQAS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf