mRNA_Ecto-sp9_F_contig104.387.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: Similar (to F-box-containing protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3M2_ECTSI) HSP 1 Score: 289 bits (739), Expect = 9.970e-94 Identity = 137/144 (95.14%), Postives = 142/144 (98.61%), Query Frame = 1
Query: 1 LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
+CLSDAVLDLALGYLDSDSLVACQATCRAVG+AAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVA+WWAGVEAWMSRNLPEV+ TLN GVSE+ELDTAEEALGWPLPTHLRLLYRFHNGQ
Sbjct: 1 MCLSDAVLDLALGYLDSDSLVACQATCRAVGNAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAMWWAGVEAWMSRNLPEVLGTLNAGVSEQELDTAEEALGWPLPTHLRLLYRFHNGQ 144
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X6_9PHAE) HSP 1 Score: 213 bits (541), Expect = 9.530e-62 Identity = 122/208 (58.65%), Postives = 126/208 (60.58%), Query Frame = 1
Query: 1 LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQS-------------------------------------------------------DDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHP-------ADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQAS 438
LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQS DDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHP ADV R+ + +P V + GVSEEELDTAEEALGWPLPTHLRLLYRFHNGQAS
Sbjct: 52 LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSAGVRPDLSIPAFGDICARLVPKNICCAFTFEVFLSSDDEVFVLHSNSTCPTCLLTDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPRLNFLPPADVVRIGTGCGAEFSPFLCRIPRVSLNVRVGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQAS 259
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3IR04_BRADI) HSP 1 Score: 96.7 bits (239), Expect = 1.270e-20 Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 1
Query: 7 LSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
L +LD + + + A T + +A D +WR C +D G + + PE R + +F ++++AW +F Y VKRV ++W +++W+S N PE + TLN GVSE ++ +AE+ LG+ LP +LLYRF NGQ
Sbjct: 44 LEGLILDTVISKAGARTAAALACTSTHLRTAVDEDAVWRRFCAQDLGLDAPLDPEDRP--LPSFKDAYKAWLVSFGMYPLPLVKRVKLFWTSLKSWLSENFPEALRTLNKGVSEAQIRSAEDDLGFKLPMPTKLLYRFCNGQ 183
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XR25_9ORYZ) HSP 1 Score: 92.4 bits (228), Expect = 3.750e-19 Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 1
Query: 7 LSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
L LD + + VA + + AA D LWR C +D G + + +F ++++ W +F Y V+RV +WA +++W+S N PE + TLN GVSE ++ +AE+ LG+ LP +LLYRF NGQ
Sbjct: 16 LEGLALDTVIAKAGASHAVALACASKRLRDAAGDDALWRRFCADDLGLRGDAPLDPDGRPLPSFKDAYKVWMESFGMYPLPLVRRVKNFWASLKSWLSENFPEALKTLNKGVSEAQIQSAEDDLGFKLPMPTKLLYRFCNGQ 157
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=20 Tax=Oryza TaxID=4527 RepID=I1QZ65_ORYGL) HSP 1 Score: 92.4 bits (228), Expect = 4.230e-19 Identity = 47/124 (37.90%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 61 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
+AC +T + AA D LWR C +D + P+ R+ + +F ++++ W +F Y V+RV ++W+ +++W+S N PE + TLN GVSE ++ +AE+ LG+ LP +LLYRF NGQ
Sbjct: 72 LACAST--RLRDAAGDDALWRHFCADDLALHAPLAPDGRA--LPSFKDAYKVWLESFGMYPLPLVRRVKIFWSSLKSWLSENFPEALKTLNKGVSEAQIQSAEDDLGFKLPLPTKLLYRFCNGQ 191
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: F-box (protein SKIP16 n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5W6S7_9POAL) HSP 1 Score: 89.7 bits (221), Expect = 3.510e-18 Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 61 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
+AC +T + +A D LWR C ED G + V PE R + +F +++ W +F Y VKRV +W +++W+S N PE TL GVSE +L +AEE LG+ LP +LLYRF N Q
Sbjct: 42 LACAST--RLRAAVADDSLWRRFCAEDLGLDAPVDPEGRP--LPSFQVAYKVWLESFGMYPLPLVKRVKEFWNSMKSWLSENFPEAAKTLCKGVSEAQLKSAEEDLGFKLPMPTKLLYRFCNAQ 161
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: Uncharacterized (protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804NL46_MAIZE) HSP 1 Score: 88.2 bits (217), Expect = 4.880e-18 Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 61 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
+AC +T + +A D LWR C ED G + V PE R + +F +++ W +F Y VKRV +W ++ W+S N PE TL GVSE +L +AE+ LG+ LP +LLYRF N Q
Sbjct: 39 LACAST--RLRTAVADDSLWRRFCGEDLGLDAPVDPEGRP--LPSFQVAYKVWSESFGMYPLPMVKRVRQFWTSMKTWLSENFPEAYKTLCEGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 158
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: Uncharacterized (protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A804NL47_MAIZE) HSP 1 Score: 88.2 bits (217), Expect = 5.990e-18 Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 61 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
+AC +T + +A D LWR C ED G + V PE R + +F +++ W +F Y VKRV +W ++ W+S N PE TL GVSE +L +AE+ LG+ LP +LLYRF N Q
Sbjct: 39 LACAST--RLRTAVADDSLWRRFCGEDLGLDAPVDPEGRP--LPSFQVAYKVWSESFGMYPLPMVKRVRQFWTSMKTWLSENFPEAYKTLCEGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 158
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=9 Tax=Andropogoneae TaxID=147429 RepID=C5Y205_SORBI) HSP 1 Score: 88.2 bits (217), Expect = 1.210e-17 Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 61 VACQATCRAVGSAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
+AC +T + +A D LWR C ED G + V PE + + +F +++ W +F Y VKRV +W ++ W+S N PE TL GVSE +L +AE+ LG+ LP +LLYRF N Q
Sbjct: 39 LACAST--RLRTAVADDSLWRRFCAEDLGLDAPVDPE--GQPLPSFQVAYKVWLESFGMYPLPMVKRVKQFWTSMKTWLSENFPEAYKTLCKGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 158
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Match: ApaG (domain-containing protein n=4 Tax=Setaria TaxID=4554 RepID=K3ZIF4_SETIT) HSP 1 Score: 87.4 bits (215), Expect = 2.300e-17 Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 94 SAAQSDDLWRSKCLEDWGEERRVRPEQRSELVSTFLESWRAWRRAFNSYHPADVKRVAVWWAGVEAWMSRNLPEVVATLNTGVSEEELDTAEEALGWPLPTHLRLLYRFHNGQ 432
+A D LWR C +D G + V PE R + +F +++ W +F Y + VKRV +W ++ W+S N PE TL GVSE +L +AE+ LG+ LP +LLYRF N Q
Sbjct: 49 AAVADDSLWRRFCADDLGLDAPVDPEGRP--LPSFQVAYKVWLESFGMYPLSLVKRVKEFWGSMKKWLSENFPEAAKTLCKGVSEAQLKSAEDDLGFKLPMPTKLLYRFCNAQ 159 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig104.387.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig104.387.1 >prot_Ecto-sp9_F_contig104.387.1 ID=prot_Ecto-sp9_F_contig104.387.1|Name=mRNA_Ecto-sp9_F_contig104.387.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=146bp LCLSDAVLDLALGYLDSDSLVACQATCRAVGSAAQSDDLWRSKCLEDWGEback to top mRNA from alignment at Ecto-sp9_F_contig104:3904..5637- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig104.387.1 ID=mRNA_Ecto-sp9_F_contig104.387.1|Name=mRNA_Ecto-sp9_F_contig104.387.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig104:3904..5637- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig104:3904..5637- >mRNA_Ecto-sp9_F_contig104.387.1 ID=mRNA_Ecto-sp9_F_contig104.387.1|Name=mRNA_Ecto-sp9_F_contig104.387.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp9_F_contig104:3904..5637- (Ectocarpus species9 EcSCA_722f female)back to top |