prot_Ecto-sp9_F_contig10381.376.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10381.376.1
Unique Nameprot_Ecto-sp9_F_contig10381.376.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length369
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10381.376.1 vs.
Match: PPR_long (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 4.340e-105
Identity = 290/352 (82.39%), Postives = 293/352 (83.24%), Query Frame = 0 
Query:    1 DVAGTTAAVPVKKNRYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHXXXXXXXXXXXXXXXXXXXXXXXXXMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXXPPRDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVEPVVI 352
            D+    A +    N YCVNAALDACGKAGRVQEALGLMRDARASGIELDVVS                    IREMEAEYGIKPNH                         MKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXX   DPVEVADACSYNTALSACEVGEQW RALSLLRDMPKRGV+PVVI
Sbjct:  145 DILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXX---DPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVI 493
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BLAST of mRNA_Ecto-sp9_F_contig10381.376.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SAR9_ALECA)

HSP 1 Score: 53.1 bits (126), Expect = 4.610e-5
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 
Query:  315 DACSYNTALSACEVGEQWERALSLLRDMPKRGVEPVVISYNTVISACGKCGE 366
            D  +Y TA+  C+VGE WERA+ LLR M      P +++Y+  ISAC KCG+
Sbjct:   69 DPGNYVTAIRGCKVGEDWERAVRLLRLMHFCDTIPDLMAYSATISACEKCGQ 120
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BLAST of mRNA_Ecto-sp9_F_contig10381.376.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IFC2_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 5.530e-5
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0 
Query:  315 DACSYNTALSACEVGEQWERALSLLRDMPKRGVEPVVISYNTVISAC 361
            D   YN+ L+ACE G QWE  L LL  MP   +EP V+SY+  ISAC
Sbjct:    9 DETGYNSILTACEKGRQWEMVLWLLATMPSLRLEPDVVSYSAAISAC 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10381.376.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
PPR_long4.340e-10582.39domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical4.610e-548.08protein (Fragment) n=1 Tax=Alexandrium catenella T... [more]
Hypothetical5.530e-553.19protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=63... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 310..369
e-value: 1.3E-12
score: 49.7
coord: 139..304
e-value: 1.3E-47
score: 164.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 8..138
e-value: 9.9E-33
score: 116.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 90..253
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 315..362
e-value: 9.7E-9
score: 35.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 214..272
e-value: 1.1E-13
score: 51.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 51..85
e-value: 4.3E-6
score: 24.5
coord: 17..50
e-value: 3.3E-5
score: 21.8
coord: 228..262
e-value: 6.9E-7
score: 27.1
coord: 87..117
e-value: 8.2E-5
score: 20.5
coord: 159..192
e-value: 2.0E-4
score: 19.3
coord: 263..287
e-value: 1.3E-4
score: 19.9
coord: 318..349
e-value: 2.4E-4
score: 19.1
coord: 193..227
e-value: 4.1E-11
score: 40.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 11.608
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 14..48
score: 9.295
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 85..119
score: 10.896
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 315..349
score: 10.863
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 49..84
score: 8.923
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 261..295
score: 8.966
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 155..189
score: 9.032
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 350..369
score: 6.193
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 120..154
score: 7.125
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..225
score: 13.614
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 19..184
e-value: 7.0E-11
score: 41.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 122..289
coord: 17..163
coord: 314..366

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10381contigEcto-sp9_F_contig10381:1136..4570 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10381.376.1mRNA_Ecto-sp9_F_contig10381.376.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10381 1136..4570 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10381.376.1 ID=prot_Ecto-sp9_F_contig10381.376.1|Name=mRNA_Ecto-sp9_F_contig10381.376.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=369bp
DVAGTTAAVPVKKNRYCVNAALDACGKAGRVQEALGLMRDARASGIELDV
VSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCG
KADEAASLLREMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDW
PVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVA
ACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIF
REMERARVRPNIITHNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGG
GGGGGPPRDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVEPV
VISYNTVISACGKCGEGDQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long