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Homology
BLAST of mRNA_Ecto-sp9_F_contig10381.376.1 vs.
Match: PPR_long (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI) HSP 1 Score: 338 bits (867), Expect = 4.340e-105 Identity = 290/352 (82.39%), Postives = 293/352 (83.24%), Query Frame = 1
Query: 1 DVAGTTAAVPVKKNRYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHXXXXXXXXXXXXXXXXXXXXXXXXXMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXXPPRDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVEPVVI 1056
D+ A + N YCVNAALDACGKAGRVQEALGLMRDARASGIELDVVS IREMEAEYGIKPNH MKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXX DPVEVADACSYNTALSACEVGEQW RALSLLRDMPKRGV+PVVI
Sbjct: 145 DILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXXX---DPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVI 493
BLAST of mRNA_Ecto-sp9_F_contig10381.376.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SAR9_ALECA) HSP 1 Score: 53.1 bits (126), Expect = 4.610e-5 Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 943 DACSYNTALSACEVGEQWERALSLLRDMPKRGVEPVVISYNTVISACGKCGE 1098
D +Y TA+ C+VGE WERA+ LLR M P +++Y+ ISAC KCG+
Sbjct: 69 DPGNYVTAIRGCKVGEDWERAVRLLRLMHFCDTIPDLMAYSATISACEKCGQ 120
BLAST of mRNA_Ecto-sp9_F_contig10381.376.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IFC2_9DINO) HSP 1 Score: 54.7 bits (130), Expect = 5.530e-5 Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1
Query: 943 DACSYNTALSACEVGEQWERALSLLRDMPKRGVEPVVISYNTVISAC 1083
D YN+ L+ACE G QWE L LL MP +EP V+SY+ ISAC
Sbjct: 9 DETGYNSILTACEKGRQWEMVLWLLATMPSLRLEPDVVSYSAAISAC 55
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 341.3 |
| Seed ortholog evalue | 5.7e-91 |
| Seed eggNOG ortholog | 2880.D7G0M5 |
| KEGG ko | ko:K17710 |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03016,ko03029 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Pentatricopeptide repeat |
| Ec32 ortholog | Ec-07_001540.1 |
| Exons | 5 |
| Model size | 1107 |
| Cds size | 1107 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928246.3279836-CDS-Ecto-sp9_F_contig10381:1135..1261 | 1622928246.3279836-CDS-Ecto-sp9_F_contig10381:1135..1261 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 1136..1261 - |
| 1692277807.5603461-CDS-Ecto-sp9_F_contig10381:1135..1261 | 1692277807.5603461-CDS-Ecto-sp9_F_contig10381:1135..1261 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 1136..1261 - |
| 1622928246.3402693-CDS-Ecto-sp9_F_contig10381:1817..2138 | 1622928246.3402693-CDS-Ecto-sp9_F_contig10381:1817..2138 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 1818..2138 - |
| 1692277807.5712898-CDS-Ecto-sp9_F_contig10381:1817..2138 | 1692277807.5712898-CDS-Ecto-sp9_F_contig10381:1817..2138 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 1818..2138 - |
| 1622928246.354096-CDS-Ecto-sp9_F_contig10381:2591..2837 | 1622928246.354096-CDS-Ecto-sp9_F_contig10381:2591..2837 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 2592..2837 - |
| 1692277807.5794525-CDS-Ecto-sp9_F_contig10381:2591..2837 | 1692277807.5794525-CDS-Ecto-sp9_F_contig10381:2591..2837 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 2592..2837 - |
| 1622928246.3639376-CDS-Ecto-sp9_F_contig10381:3457..3589 | 1622928246.3639376-CDS-Ecto-sp9_F_contig10381:3457..3589 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 3458..3589 - |
| 1692277807.5893455-CDS-Ecto-sp9_F_contig10381:3457..3589 | 1692277807.5893455-CDS-Ecto-sp9_F_contig10381:3457..3589 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 3458..3589 - |
| 1622928246.3773015-CDS-Ecto-sp9_F_contig10381:4288..4570 | 1622928246.3773015-CDS-Ecto-sp9_F_contig10381:4288..4570 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 4289..4570 - |
| 1692277807.5990279-CDS-Ecto-sp9_F_contig10381:4288..4570 | 1692277807.5990279-CDS-Ecto-sp9_F_contig10381:4288..4570 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig10381 4289..4570 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10381.376.1 >prot_Ecto-sp9_F_contig10381.376.1 ID=prot_Ecto-sp9_F_contig10381.376.1|Name=mRNA_Ecto-sp9_F_contig10381.376.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=369bp
DVAGTTAAVPVKKNRYCVNAALDACGKAGRVQEALGLMRDARASGIELDV VSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCG KADEAASLLREMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDW PVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVA ACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIF REMERARVRPNIITHNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGG GGGGGPPRDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVEPV VISYNTVISACGKCGEGDQ back to topmRNA from alignment at Ecto-sp9_F_contig10381:1136..4570- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig10381.376.1 ID=mRNA_Ecto-sp9_F_contig10381.376.1|Name=mRNA_Ecto-sp9_F_contig10381.376.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3435bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10381:1136..4570- (Ectocarpus species9 EcSCA_722f female) GACGTCGCCGGCACTACCGCCGCCGTTCCCGTTAAAAAAAACAGGTACTG
CGTGAACGCTGCGCTGGACGCGTGCGGCAAGGCCGGGCGGGTCCAGGAAG
CCCTGGGCCTCATGAGGGACGCGCGGGCGTCGGGGATAGAGCTCGACGTT
GTGAGCTACAACTGCGCTATCCCGGCCTGCGTCACGGGGGGGGACTGGGA
GCTGGCCCTGAGCATGATTCGGGAGATGGAAGCCGAGTACGGCATCAAGC
CGAATCACATCACCTACCAGGCGGCGATAAAGGTGTGCGCTCGCACGGCT
GCTGCTGCTGCTATTGCTGCTGCTATTGCTGCTGCTGTTGTTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGCTGCTGCTGCGGCTG
CTGCGGCTGCTGCGGCTGCTGCGGCTGCTGCTGATGTTGTCGTGCTCGAA
AAGTTGTGAAAATGAACAAACGGCTAGGGTAACAGCAGTGTGTGTAATTT
GACTGACGTAACGTTTTATTTTTTCAGTACCCCGAGAGGTGTTGCCGCGG
AACCCCTGCGGTATGGCTTGGCGCCCAGACGCGGCAGGAATGTTCAGTTC
CTGCAACGACGCTGCCCTGCTTTGCACTCTTCGAGGATGTCTTTGTGCTC
TGCTAAGATAATATATTGTTATTTGCGGCTTTTCTTTTGCCCACGAAGAG
CATGTGTGTCGTGCACGAAAGCTGAGAAACGATAGCTTGGATTTGGTACC
GAGTCACATGGCATGCGTACGTGCATACGACGATGAATAAATTAGGGTTC
GGCTTTCCCCAGTGTGACTCGGGAATTAGCCGCTCGTTAGTCCCTTAGCT
TTGCCCGTTGTAACTCGGGAAAGAGCCGTTCGTAGTCCCATGATCCCGCA
CAACAAGGGATGACGTACTATTAGACCGCCTGCAACAGTTGTACTCAACC
GACGGCGCGCGGATTACGTGATGCGGGGTAGGTGTGCGGGAGGTGCGGCA
AGGCTGACGAGGCGGCTAGTCTCCTGAGAGAGATGAAGGACGGCGGCGTG
CCGCTCAAGACGTCGGTGTACTCGGCGGTCTTCAACGCCTTCCGAAGGGT
GGATCACTGGCAGGTGCTTCACTTGTTCCCACGTTTTGTTTTGTTTTGTT
TTGTTTTTTTGTTTTTTTTCATGCTTTTTGGTTTTCTCGTCATTGGCCGG
TGGCAGGGTATGCCAGCGAGTGCCACGGGCATGTTTTTGTGTGTGTGTGT
GTTTTCAAGCATGACACTGAACCAGCTGTCACGAACGGTGTGTACTGGCG
TGTGCCTATCCAGAATGTACATGTGTACAAGTGCTCCCTGCGGAGTGGGC
TGATGGAAGCACAACAGTTTCACCGAGGGGTGATGCTAGATGAAAAAAAA
CAAAGCAGGCAGCAAGACTAACCCACAGCTAGCTGCCAGCTGCAGTTTGA
CGTTTCCCAATATCAACAGCTCACTCAGCTGAAGTGTTTTTGACTCGAAC
AGCCCAGAGAACCTCAACGAGCCAAAAACAAAAATTACAAAGTCTGTAGT
TAGTCTTGCAAGACGTACCAGGCTGCCAGACACACTAAATAGAGTTGGCG
TGGGTTTTCCCTGAAATACCAGCCCTACACGACGCCAGCATCCCCACCAT
GGACAACAACTTTTAACAACCACAACAACAACAACAACAACAACAACATC
AACATCAACATCAACAAAACCCTCTTACCGCAGGCGGCGGCCTCCACGCT
GCGCGAGATCCACGACTGGCCGGTCAAGCCGAACGTCTTCAACTACAACC
TCGCCATCTGCACCTGCACCGACTGCGGGGAGTGGGAGGAGGCCCTCGAC
CTGCTGCACTTCATGCGCGAGGTCGGCGGGGTGGAGCCGGACGTGGTGAC
GTACAACATCGTCGTGGCGGCCTGCGGGAAGGCCGGGCAGGGGGAGAAGG
CGATCGAGATATTCCGTGAGATGTCAGAGGTGGGTGACTGCTGCTGCTGC
TGTGTGTCGTTGAATCAGCATCGACCGCGCTAGTCGATGAAAGGATGTCA
GTCTTTGTAGCGAGATAAGAAACGCGAAATAAGAAACGCAAACACTATTC
GAAGGGTTTCTTTCACCGACAGAGGGGCGCAGGAGTTGGATTTGTGTGTA
TGTGTGTGTGCGTGTGTCTTTATATATTAGCATCGACCGCGCCAACCGGC
TGGCCAATCTTACAGACATCAGTCAGTCTTGCAGCGGTTGAAAAACAACA
CCTAGGTAAGTGTCAGCGAGTACTATGGTTTCGTTTGCTGATTTATCTAG
TAGAGTAGGAGACTTGTCTACTGCGGATGGAGATAGAAGTCGTTGTTCCT
TTATTGTAACGTAAAAAGACAACAAACGGCAGCAGCAGCAGCAGCGTAGC
GTTATCCAACACTGACAGCACCACCACCACAGGTCGGGATCAAGCCGGAC
GTGATCAGCTTCACCACGGCGATCTCCGCCTGCGGCAGCTGCGGTCTGTC
CGAGGAGGCCCTGTCCATCTTCCGCGAGATGGAGAGAGCCCGCGTGCGCC
CCAACATCATCACCCACAACGCGGTCATGTCCGCGTGCATCGCCGCCGGC
CAGTGGGAGGAGGCCCTCGACTTTTTCACCGAGGTGGTGGACGGCAGCGG
TGCCGCCAACGGCGGCGGCGGCGGCGGCGGTGGTGGTCCTCCGCGTGATC
CGGTAGAGGTGGCCGACGCGTGCAGCTACAACACGGCCCTATCGGCGTGC
GAGGTGAGGAAAAGCAGCAGCCGCCGCCGCCGCCGCCTTGATTGATTGGT
TGATTGGACCGCCTTCGCGATTAATAAACTTCTTGAGGAATAGAACGGGG
AGGGGAGGGTAGGGGGTACGCAGACCCTATCCGTAGCCTGAGCTCTCTCC
ATTGCTTTGTCTGTAGCGACGGCGACGCAGGTTGGAACGTGGCGTGTGGT
GTAGCGTATAAGGAGCTGGGCGGGGGGGGGGTGAGGGAAAGTTGCCAGGA
GCAGCGGCGGTGGCGATGATCCCCCAACCCCCCGGGTTTCCTTCTCAAAT
TGTTAACGTAGACCGTTGTCGTATGGTTGATTGCTCGTGTGTTGTAGCCA
AAAAAGAAGAAAGAATCGCGAGATCCTCTCCCAGTTGAACAGCCGGGGGT
GGTCTGTACACAGCGTTGTACGAAGAGCTCGAGAGAAGCGTGCTTGTCTG
CCGTTCGTATCTTCCAATCGATCATTCGTTGTTCATGGCAAGACATGACG
CAGAAAGCGAGAGCCCAGATGGATGTTTCACCCTTCCTCCCACCCCCCAC
CCGACACAGGTGGGCGAGCAGTGGGAGCGGGCGTTGTCTTTGTTGCGCGA
CATGCCCAAACGCGGCGTCGAGCCCGTTGTGATCAGCTACAACACGGTCA
TCTCGGCTTGCGGCAAGTGCGGAGAGGGTGACCAG back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig10381:1136..4570- >mRNA_Ecto-sp9_F_contig10381.376.1 ID=mRNA_Ecto-sp9_F_contig10381.376.1|Name=mRNA_Ecto-sp9_F_contig10381.376.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2214bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10381:1136..4570- (Ectocarpus species9 EcSCA_722f female) GACGTCGCCGGCACTACCGCCGCCGTTCCCGTTAAAAAAAACAGGTACTG CGTGAACGCTGCGCTGGACGCGTGCGGCAAGGCCGGGCGGGTCCAGGAAG CCCTGGGCCTCATGAGGGACGCGCGGGCGTCGGGGATAGAGCTCGACGTT GTGAGCTACAACTGCGCTATCCCGGCCTGCGTCACGGGGGGGGACTGGGA GCTGGCCCTGAGCATGATTCGGGAGATGGAAGCCGAGTACGGCATCAAGC CGAATCACATCACCTACCAGGCGGCGATAAAGGACGTCGCCGGCACTACC GCCGCCGTTCCCGTTAAAAAAAACAGGTACTGCGTGAACGCTGCGCTGGA CGCGTGCGGCAAGGCCGGGCGGGTCCAGGAAGCCCTGGGCCTCATGAGGG ACGCGCGGGCGTCGGGGATAGAGCTCGACGTTGTGAGCTACAACTGCGCT ATCCCGGCCTGCGTCACGGGGGGGGACTGGGAGCTGGCCCTGAGCATGAT TCGGGAGATGGAAGCCGAGTACGGCATCAAGCCGAATCACATCACCTACC AGGCGGCGATAAAGGTGTGCGGGAGGTGCGGCAAGGCTGACGAGGCGGCT AGTCTCCTGAGAGAGATGAAGGACGGCGGCGTGCCGCTCAAGACGTCGGT GTACTCGGCGGTCTTCAACGCCTTCCGAAGGGTGGATCACTGGCAGGTGT GCGGGAGGTGCGGCAAGGCTGACGAGGCGGCTAGTCTCCTGAGAGAGATG AAGGACGGCGGCGTGCCGCTCAAGACGTCGGTGTACTCGGCGGTCTTCAA CGCCTTCCGAAGGGTGGATCACTGGCAGGCGGCGGCCTCCACGCTGCGCG AGATCCACGACTGGCCGGTCAAGCCGAACGTCTTCAACTACAACCTCGCC ATCTGCACCTGCACCGACTGCGGGGAGTGGGAGGAGGCCCTCGACCTGCT GCACTTCATGCGCGAGGTCGGCGGGGTGGAGCCGGACGTGGTGACGTACA ACATCGTCGTGGCGGCCTGCGGGAAGGCCGGGCAGGGGGAGAAGGCGATC GAGATATTCCGTGAGATGTCAGAGGCGGCGGCCTCCACGCTGCGCGAGAT CCACGACTGGCCGGTCAAGCCGAACGTCTTCAACTACAACCTCGCCATCT GCACCTGCACCGACTGCGGGGAGTGGGAGGAGGCCCTCGACCTGCTGCAC TTCATGCGCGAGGTCGGCGGGGTGGAGCCGGACGTGGTGACGTACAACAT CGTCGTGGCGGCCTGCGGGAAGGCCGGGCAGGGGGAGAAGGCGATCGAGA TATTCCGTGAGATGTCAGAGGTCGGGATCAAGCCGGACGTGATCAGCTTC ACCACGGCGATCTCCGCCTGCGGCAGCTGCGGTCTGTCCGAGGAGGCCCT GTCCATCTTCCGCGAGATGGAGAGAGCCCGCGTGCGCCCCAACATCATCA CCCACAACGCGGTCATGTCCGCGTGCATCGCCGCCGGCCAGTGGGAGGAG GCCCTCGACTTTTTCACCGAGGTGGTGGACGGCAGCGGTGCCGCCAACGG CGGCGGCGGCGGCGGCGGTGGTGGTCCTCCGCGTGATCCGGTAGAGGTGG CCGACGCGTGCAGCTACAACACGGCCCTATCGGCGTGCGAGGTCGGGATC AAGCCGGACGTGATCAGCTTCACCACGGCGATCTCCGCCTGCGGCAGCTG CGGTCTGTCCGAGGAGGCCCTGTCCATCTTCCGCGAGATGGAGAGAGCCC GCGTGCGCCCCAACATCATCACCCACAACGCGGTCATGTCCGCGTGCATC GCCGCCGGCCAGTGGGAGGAGGCCCTCGACTTTTTCACCGAGGTGGTGGA CGGCAGCGGTGCCGCCAACGGCGGCGGCGGCGGCGGCGGTGGTGGTCCTC CGCGTGATCCGGTAGAGGTGGCCGACGCGTGCAGCTACAACACGGCCCTA TCGGCGTGCGAGGTGGGCGAGCAGTGGGAGCGGGCGTTGTCTTTGTTGCG CGACATGCCCAAACGCGGCGTCGAGCCCGTTGTGATCAGCTACAACACGG TCATCTCGGCTTGCGGCAAGTGCGGAGAGGGTGACCAGGTGGGCGAGCAG TGGGAGCGGGCGTTGTCTTTGTTGCGCGACATGCCCAAACGCGGCGTCGA GCCCGTTGTGATCAGCTACAACACGGTCATCTCGGCTTGCGGCAAGTGCG GAGAGGGTGACCAG back to top
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