prot_Ecto-sp9_F_contig1027.281.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig1027.281.1
Unique Name	prot_Ecto-sp9_F_contig1027.281.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	79

Homology

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BLAST of mRNA_Ecto-sp9_F_contig1027.281.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.840e-55
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0

Query:    1 MAIQTKHKLLVFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY 78
            MAIQTKHKLL+FWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY
Sbjct:    1 MAIQTKHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY 78

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1027.281.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.210e-29
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 0

Query:    1 MAIQTKHKLLVFWIIMLSFIAFGAWHS-EDMETPFWAMWTVPIIFLFVWLLFDCIFV-DDKAFVFDHDYENWSRRMDPMY 78
            MA+  +HKL+   II    +AF AW++ +D  T +WAMWTVPI+FL  WLL DC+FV DDKAF+FDHDYENW RR+DPMY
Sbjct:    1 MAVYGRHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYENWRRRIDPMY 80

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1027.281.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1027.281.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	4.840e-55	98.72	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5...	[more]
Uncharacterized	2.210e-29	61.25	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..32
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..8
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 33..51
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 9..27
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 52..78
None	No IPR available	SIGNALP_EUK	SignalP-TM	SignalP-TM	coord: 1..23 score: 0.56
None	No IPR available	TMHMM	TMhelix		coord: 34..56
None	No IPR available	TMHMM	TMhelix		coord: 7..24

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1027	contig	Ecto-sp9_F_contig1027:11006..12746 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1027.281.1	mRNA_Ecto-sp9_F_contig1027.281.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig1027 11006..12746 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig1027.281.1 ID=prot_Ecto-sp9_F_contig1027.281.1|Name=mRNA_Ecto-sp9_F_contig1027.281.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
MAIQTKHKLLVFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLL
FDCIFVDDKAFVFDHDYENWSRRMDPMY*