mRNA_Ecto-sp9_F_contig1027.281.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1027.281.1
Unique NamemRNA_Ecto-sp9_F_contig1027.281.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1027.281.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.840e-55
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 MAIQTKHKLLVFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY 234
            MAIQTKHKLL+FWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY
Sbjct:    1 MAIQTKHKLLIFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLLFDCIFVDDKAFVFDHDYENWSRRMDPMY 78
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BLAST of mRNA_Ecto-sp9_F_contig1027.281.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.210e-29
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 MAIQTKHKLLVFWIIMLSFIAFGAWHS-EDMETPFWAMWTVPIIFLFVWLLFDCIFV-DDKAFVFDHDYENWSRRMDPMY 234
            MA+  +HKL+   II    +AF AW++ +D  T +WAMWTVPI+FL  WLL DC+FV DDKAF+FDHDYENW RR+DPMY
Sbjct:    1 MAVYGRHKLITLLIIXXXXVAFAAWNNTDDNNTAWWAMWTVPIMFLSFWLLMDCMFVSDDKAFIFDHDYENWRRRIDPMY 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1027.281.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.840e-5598.72protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGL5... [more]
Uncharacterized2.210e-2961.25protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1027contigEcto-sp9_F_contig1027:11006..12746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue5.8e-41
Seed eggNOG ortholog2880.D8LGL5
EggNOG OGs2E174@1,2S8JA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002660.1
Exons2
Model size237
Cds size237
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928223.8106177-CDS-Ecto-sp9_F_contig1027:11005..112091622928223.8106177-CDS-Ecto-sp9_F_contig1027:11005..11209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 11006..11209 +
1692277801.8602164-CDS-Ecto-sp9_F_contig1027:11005..112091692277801.8602164-CDS-Ecto-sp9_F_contig1027:11005..11209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 11006..11209 +
1622928223.8255384-CDS-Ecto-sp9_F_contig1027:12713..127461622928223.8255384-CDS-Ecto-sp9_F_contig1027:12713..12746Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 12714..12746 +
1692277801.8742478-CDS-Ecto-sp9_F_contig1027:12713..127461692277801.8742478-CDS-Ecto-sp9_F_contig1027:12713..12746Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 12714..12746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1027.281.1prot_Ecto-sp9_F_contig1027.281.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1027 11006..12746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1027.281.1

>prot_Ecto-sp9_F_contig1027.281.1 ID=prot_Ecto-sp9_F_contig1027.281.1|Name=mRNA_Ecto-sp9_F_contig1027.281.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
MAIQTKHKLLVFWIIMLSFIAFGAWHSEDMETPFWAMWTVPIIFLFVWLL
FDCIFVDDKAFVFDHDYENWSRRMDPMY*
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mRNA from alignment at Ecto-sp9_F_contig1027:11006..12746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1027.281.1 ID=mRNA_Ecto-sp9_F_contig1027.281.1|Name=mRNA_Ecto-sp9_F_contig1027.281.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1741bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:11006..12746+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGATCCAAACGAAGCACAAGCTTCTCGTCTTCTGGATCATCATGCT
GAGCTTCATCGCGTTCGGGGCGTGGCACAGCGAGGACATGGAGACGCCGT
TCTGGGCGATGTGGACCGTGCCGATCATCTTCCTCTTCGTTTGGCTTCTG
TTCGACTGCATCTTCGTCGACGACAAGGCCTTCGTCTTCGACCACGACTA
CGAGGTCAGTCAGCGGATGTTTTGCACAACCACACTCCACGTTTCTGGAG
AGTGCTGTCAGCAAAAACACTTCTGATGTCTTCATAGCGGTAGAGGTCTG
TTTTAGTAGAAGGCAACACTATTTTTGCCGGACCTCTCGCCCTGCTTCTG
TTTTGGGACGCGTTGCGTGCTTCGCCGGCGCCGCTGCTGCTTGGTGCTGT
CTGTCTGTCTGTGCTCGCCTATCTCGTGTTCAAGGGTTTTAGCTCGTAGC
CACCTTTGCTGTTGTTCGCCCGTACACATGTCTCTTAAAAATTGCCTCGT
GTATAAATGTATAATGGACAAGATGGCCTTGATTCACTGATGATCTGAGT
GAACACGAGTACTATTGCTGTATTGTAGGGTGAATGGTCCGCTGCTGTAC
TTGTACAGTACCGCTGTATTGCCAACCTACTTGTACGCTGTCACCAGCAT
CACGCCGTAGCTCACCAGACCTACTGGATGCGTGTTGAGTGGCTCATAGC
TCCGAGCATGCTCAACGTGGATTTCTTTCTTCACTTATAGATGCCGCTCC
CCTTCCTTCGTAACCACCAAGCAATTCGTAAGCACCAAGCAGTTGGGACG
CAGGCTTCCGAGCTTCGCACCTTTTGCCGTCCCTCTGTCCAATACCTGCT
GCCGTCGCATATGCGTACGTCCAACAGACGATTGTAGCATACAGCAGTAG
GTCCACCAGTAATATATGGTGTTCGTGTTATTTTGCGCGGATGATCACTC
TGCAACGCGACCTGCTCCGCAACCTACTTCATGATTACGTGGGACCTCCT
GATGCCCGGTTGATACCGGTGGCGCTACTGCTTTGGTTGTAGAATAACAC
GGGCGCAATTCTCAGCAGTTGCTGCTGTTTACGGAGAAGGCTCCTGTACC
CCGGCAAAAGAAAGATGTGTCCCTTGTATGCATATGTGGGGTGACCTCCC
ATGCGCATGCTGGTACTGCCTAGTGTACTCGCACAGCTACCGTAGGTGGC
ACGAGATACCACACCCCCTCTATCGATTTTCAGAGCTCGATTTCTCCACG
ATGAAGAGGATGCACAATCACGTGTCACGTTTTCGGAAAGCTCTCGGCGA
GACGGTTCCAACGCCGCCATGTTTGGCACCACTCTGTTGTCCCTGCAGTG
GATTAATCGGGCTTTGACAATCGGTCTGGGGTGTGTGGCATCTTTTGTCA
CCTACGGCAGTTGGGTTGGAAATAATCCCTAGCCGGTCGCCTCGTCTTTT
TGGCATGGGCTTCGAATACGCGCGCGCGTGTGCACGTTCGTTCATGTTCT
CGGCTCTCCTCGTCACCGCGGTGTTTGATTATCTTACCACACCTCACTCC
TGCGTCTCCATGCGCTCCTTCTCACCTACTCGTGTCTCCACCGCCTGTGT
TGCCTTACCCCCGCTCTCCCCCCCCCCCCTCGTTTTTCGCATCTGTTCCG
TCCCTCTCTCTTGTGCTTGTCGCTTGTGGGGTCACCGCCGATGGCCGTTT
CCCCGCAGAACTGGAGCAGGAGAATGGATCCCATGTATTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1027:11006..12746+

>mRNA_Ecto-sp9_F_contig1027.281.1 ID=mRNA_Ecto-sp9_F_contig1027.281.1|Name=mRNA_Ecto-sp9_F_contig1027.281.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:11006..12746+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGATCCAAACGAAGCACAAGCTTCTCGTCTTCTGGATCATCATGCT
GAGCTTCATCGCGTTCGGGGCGTGGCACAGCGAGGACATGGAGACGCCGT
TCTGGGCGATGTGGACCGTGCCGATCATCTTCCTCTTCGTTTGGCTTCTG
TTCGACTGCATCTTCGTCGACGACAAGGCCTTCGTCTTCGACCACGACTA
CGAGATGGCGATCCAAACGAAGCACAAGCTTCTCGTCTTCTGGATCATCA
TGCTGAGCTTCATCGCGTTCGGGGCGTGGCACAGCGAGGACATGGAGACG
CCGTTCTGGGCGATGTGGACCGTGCCGATCATCTTCCTCTTCGTTTGGCT
TCTGTTCGACTGCATCTTCGTCGACGACAAGGCCTTCGTCTTCGACCACG
ACTACGAGAACTGGAGCAGGAGAATGGATCCCATGTATTAAAACTGGAGC
AGGAGAATGGATCCCATGTATTAA
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