prot_Ecto-sp9_F_contig10176.207.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10176.207.1
Unique Nameprot_Ecto-sp9_F_contig10176.207.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length431
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10176.207.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 492 bits (1267), Expect = 2.650e-158
Identity = 368/435 (84.60%), Postives = 371/435 (85.29%), Query Frame = 0 
Query:   18 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAE---------------EALKTREEMRAAGIPXXXXXXXXXXXXXXXXXXWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----WSQTLRHRQXXXRERLENGVPPSPRVFHGLMEAYSRAGEWERAQQCLDDMRQ-GSGWLPGDDGQERVGAGSGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEXXXXXXXXXXXXXXXXXXXARATSLLAEMATLESEHRLARLGEEENASPSLGANNQGVRTVPQLSEDDAAPRRSTDSYRLGMEACRRGGDTRGVMSTFVIMEEEGFEADV 431
            MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASA PA GG VELDFLSYNTVIRACAAAGEAE               EALKTREEMRAA IP                  WEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     WSQTLRHRQ   +ERLENGVPPSPRV HGLMEAYSRAGEWERAQQCLDDMRQ GSGWLPGDDG+ERVGAG+GVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIE      XXXXXXXXXXXXXARATSLLAEMATLESE RLAR GEEEN S SLGANN GVRTVPQLSEDDAAPRRSTDSYRLGMEACRRGGDTRGVMSTFVIMEEEGFE DV
Sbjct:    1 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASAPPAAGGSVELDFLSYNTVIRACAAAGEAEDVRDNDEAFFGGKALEALKTREEMRAADIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPWSQTLRHRQRRRQERLENGVPPSPRVIHGLMEAYSRAGEWERAQQCLDDMRQAGSGWLPGDDGRERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLESEQRLAREGEEENVSLSLGANN-GVRTVPQLSEDDAAPRRSTDSYRLGMEACRRGGDTRGVMSTFVIMEEEGFEPDV 434
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BLAST of mRNA_Ecto-sp9_F_contig10176.207.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 2.080e-144
Identity = 301/424 (70.99%), Postives = 302/424 (71.23%), Query Frame = 0 
Query:    8 VDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGIPXXXXXXXXXXXXXXXXXXWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSQTLRHRQXXXRERLENGVPPSPRVFHGLMEAYSRAGEWERAQQCLDDMRQGSGWLPGDDGQERVGAGSGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEXXXXXXXXXXXXXXXXXXXARATSLLAEMATLESEHRLARLGEEENASPSLGANNQGVRTVPQLSEDDAAPRRSTDSYRLGMEACRRGGDTRGVMSTFVIMEEEGFEADV 431
            VDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGI XXXXXXXXXXXXXXXXXX  AAEAVVREMVA                                                                                                                YSRAGEWERAQQCLDDMRQGSGWLP DDGQERVGAG+GVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGI XXXXXXXXXXXXXXXXXXX  ATSLLAEMATLESEHRLARLGEEE ASPSLGANNQGVRTVPQ SEDDAAPRRSTDSYRLGMEACRRGGD RGVMSTFVIMEEEGFEADV
Sbjct:   91 VDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGIXXXXXXXXXXXXXXXXXXXXXAAEAVVREMVA----------------------------------------------------------------------------------------------------------------YSRAGEWERAQQCLDDMRQGSGWLPEDDGQERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIXXXXXXXXXXXXXXXXXXXXXXATSLLAEMATLESEHRLARLGEEEKASPSLGANNQGVRTVPQPSEDDAAPRRSTDSYRLGMEACRRGGDARGVMSTFVIMEEEGFEADV 402
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10176.207.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.650e-15884.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.080e-14470.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 73..105
e-value: 3.5E-7
score: 28.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 73..116
e-value: 1.8E-8
score: 34.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 31..55
e-value: 1.2
score: 9.5
coord: 241..265
e-value: 0.02
score: 15.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 105..135
score: 8.243
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 70..104
score: 11.301
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 236..266
score: 8.385
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 29..59
score: 6.95
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 395..429
score: 7.026
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 288..322
score: 8.692
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..21
score: 5.316
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..213
e-value: 7.4E-27
score: 96.7
coord: 214..390
e-value: 1.3E-19
score: 72.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 232..430
coord: 6..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10176contigEcto-sp9_F_contig10176:599..4297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10176.207.1mRNA_Ecto-sp9_F_contig10176.207.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10176 599..4297 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10176.207.1 ID=prot_Ecto-sp9_F_contig10176.207.1|Name=mRNA_Ecto-sp9_F_contig10176.207.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=431bp
SLAHGGEVDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREAR
GLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAEEALKTREEMRAA
GIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSSSSSSAAAATAA
AAEVPSPATEGGGSATGGTPPATEGVAAAAAAAAAEATAADAAVAAGAGS
QSAAEEDEEEEDSWSQTLRHRQRRRRERLENGVPPSPRVFHGLMEAYSRA
GEWERAQQCLDDMRQGSGWLPGDDGQERVGAGSGVKPDSTSVGWAIQACA
AAGQWDRALATFSGAKSDGIEPGQLCFDAALLACAVGGQGARATSLLAEM
ATLESEHRLARLGEEENASPSLGANNQGVRTVPQLSEDDAAPRRSTDSYR
LGMEACRRGGDTRGVMSTFVIMEEEGFEADV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf