prot_Ecto-sp9_F_contig1013.165.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1013.165.1
Unique Nameprot_Ecto-sp9_F_contig1013.165.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length417
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1013.165.1 vs.
Match: ARID/BRIGHT (DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 2.710e-86
Identity = 189/417 (45.32%), Postives = 189/417 (45.32%), Query Frame = 0 
Query:    1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGAVLRDVPMVQGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPPRSSAGXXXXXXXXXXXXXXXXXXXXXDVVPSMGRDQHAGVGTQRYEQHGHYQRQMRQRELEQXXXXXXXXRHMEQMSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGDSYSRGGGVYPSQDSYRSRGPSHGGGVGVSASIPRADLPRALGSGSATEVCEAVNTLTLETYGTAEEELVLDHVPGLLDAIFDLMDKLNPAIAQ 417
            MDERAVAALESLYSGPIKA ELVRAREIFAFLR NGQGAVLRDVPMV GKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR                                          HAGVGTQRYEQHGHYQRQMRQRELEQ                                                                                                                                                                                      L RALGSGSATEVCEAVNTLTLETYGTAEEELVLDHVPGLLDAIFDLMDKLNPAIAQ
Sbjct:    1 MDERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR------------------------------------------HAGVGTQRYEQHGHYQRQMRQRELEQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLARALGSGSATEVCEAVNTLTLETYGTAEEELVLDHVPGLLDAIFDLMDKLNPAIAQ 194
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1013.165.1 vs.
Match: ARID (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE)

HSP 1 Score: 265 bits (678), Expect = 1.100e-84
Identity = 162/181 (89.50%), Postives = 162/181 (89.50%), Query Frame = 0 
Query:    1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGAVLRDVPMVQGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQARQVHFPPRSSAGXXXXXXXXXXXXXXXXXXXXXDVVPSMGRDQHAG---VGTQRYEQHGHYQRQMRQRELEQ 178
            MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQG VLRDVPMV GKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ   VHFP RSSAG   XXXXXXXXXXXXXX     VVP MGRDQHAG   VGTQRYEQHGHYQ QMRQRELEQ
Sbjct:    1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNGKLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQ---VHFPSRSSAGQHQXXXXXXXXXXXXXX-----VVPPMGRDQHAGMSGVGTQRYEQHGHYQGQMRQRELEQ 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1013.165.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
ARID/BRIGHT2.710e-8645.32DNA binding domain containing protein n=1 Tax=Ecto... [more]
ARID1.100e-8489.50domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..143
NoneNo IPR availableCOILSCoilCoilcoord: 189..222
NoneNo IPR availableCOILSCoilCoilcoord: 226..251
NoneNo IPR availableSMARTSM01014ARID_2coord: 20..107
e-value: 4.4E-11
score: 52.8
NoneNo IPR availablePANTHERPTHR15348AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHTcoord: 28..309
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 19..112
e-value: 1.6E-4
score: 27.7
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 28..107
e-value: 3.4E-11
score: 43.7
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 18..111
score: 18.665
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 8..142
e-value: 5.6E-17
score: 63.3
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 37..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1013contigEcto-sp9_F_contig1013:33..5475 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1013.165.1mRNA_Ecto-sp9_F_contig1013.165.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1013 33..5490 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1013.165.1 ID=prot_Ecto-sp9_F_contig1013.165.1|Name=mRNA_Ecto-sp9_F_contig1013.165.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=417bp
MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGAVLRDVPMVQGK
LLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYK
NFLYGFEQARQVHFPPRSSAGQQQQQQQQQQQQQQQQQQQQEDVVPSMGR
DQHAGVGTQRYEQHGHYQRQMRQRELEQQEQQSKQQRHMEQMSQQEEHHQ
RKLLEQQQQQQQQRKLQEQQQQRFMIRQQQQQQQQQQQQLLLQQQQQAEQ
EMLLKQPQSRHHQQQYISQQQQRQQQQQQHARQQAIYQAQQQQQQQQQQQ
HHHRMQQSGYLSSSSGGGGGRHGDSYSRGGGVYPSQDSYRSRGPSHGGGV
GVSASIPRADLPRALGSGSATEVCEAVNTLTLETYGTAEEELVLDHVPGL
LDAIFDLMDKLNPAIAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf