prot_Ecto-sp9_F_contig10060.101.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10060.101.1
Unique Nameprot_Ecto-sp9_F_contig10060.101.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length80
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 8.860e-23
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0 
Query:    1 STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH 80
            STLTFNKTNFIGNVA  NGGAVYVSDGSFVSCADG  XXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH
Sbjct:   69 STLTFNKTNFIGNVASGNGGAVYVSDGSFVSCADGXXXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH 148
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-19
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0 
Query:    1 STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH 80
            STLTFN+TNFIGNVA  NGGAV+VSDGS VSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWW  NTAA RGGA+R+QH
Sbjct:  320 STLTFNQTNFIGNVASGNGGAVFVSDGSLVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWFSNTAAIRGGAMRVQH 399
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.150e-6
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 0 
Query:    1 STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRL 78
            S+L FN TNF+GN A  NGGA+YVS+ S VSC  G  XXXXXXXXXXXXXXXXXXXXXXX   WL N+A   GGAVR+
Sbjct:   19 SSLAFNGTNFVGNSASGNGGAIYVSESSHVSCVGGGVXXXXXXXXXXXXXXXXXXXXXXXXXSWLNNSAGGSGGAVRI 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Polymorphic8.860e-2395.00Outer membrane protein G/I family n=1 Tax=Ectocarp... [more]
Polymorphic1.140e-1987.50Outer membrane protein G/I family n=3 Tax=Ectocarp... [more]
Uncharacterized1.150e-669.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 7..29
e-value: 0.0019
score: 16.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10060contigEcto-sp9_F_contig10060:1099..1338 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10060.101.1mRNA_Ecto-sp9_F_contig10060.101.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10060 1099..1340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10060.101.1 ID=prot_Ecto-sp9_F_contig10060.101.1|Name=mRNA_Ecto-sp9_F_contig10060.101.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTFVENEAGTDGGAM
FVTDGSAVSCGGWWLGNTAAARGGAVRLQH
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat