mRNA_Ecto-sp9_F_contig10060.101.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10060.101.1
Unique NamemRNA_Ecto-sp9_F_contig10060.101.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 8.860e-23
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 1 
Query:    1 STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH 240
            STLTFNKTNFIGNVA  NGGAVYVSDGSFVSCADG  XXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH
Sbjct:   69 STLTFNKTNFIGNVASGNGGAVYVSDGSFVSCADGXXXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH 148
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BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-19
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRLQH 240
            STLTFN+TNFIGNVA  NGGAV+VSDGS VSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWW  NTAA RGGA+R+QH
Sbjct:  320 STLTFNQTNFIGNVASGNGGAVFVSDGSLVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWFSNTAAIRGGAMRVQH 399
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BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.150e-6
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    1 STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTXXXXXXXXXXXXXXXXXXXXXXXGGWWLGNTAAARGGAVRL 234
            S+L FN TNF+GN A  NGGA+YVS+ S VSC  G  XXXXXXXXXXXXXXXXXXXXXXX   WL N+A   GGAVR+
Sbjct:   19 SSLAFNGTNFVGNSASGNGGAIYVSESSHVSCVGGGVXXXXXXXXXXXXXXXXXXXXXXXXXSWLNNSAGGSGGAVRI 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10060.101.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Polymorphic8.860e-2395.00Outer membrane protein G/I family n=1 Tax=Ectocarp... [more]
Polymorphic1.140e-1987.50Outer membrane protein G/I family n=3 Tax=Ectocarp... [more]
Uncharacterized1.150e-669.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10060contigEcto-sp9_F_contig10060:1099..1340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue2.2e-19
Seed eggNOG ortholog2880.D8LIY0
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928198.5220225-CDS-Ecto-sp9_F_contig10060:1098..13381622928198.5220225-CDS-Ecto-sp9_F_contig10060:1098..1338Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10060 1099..1338 +
1692277791.821364-CDS-Ecto-sp9_F_contig10060:1098..13381692277791.821364-CDS-Ecto-sp9_F_contig10060:1098..1338Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10060 1099..1338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10060.101.1prot_Ecto-sp9_F_contig10060.101.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10060 1099..1338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10060.101.1

>prot_Ecto-sp9_F_contig10060.101.1 ID=prot_Ecto-sp9_F_contig10060.101.1|Name=mRNA_Ecto-sp9_F_contig10060.101.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=80bp
STLTFNKTNFIGNVAWSNGGAVYVSDGSFVSCADGTTFVENEAGTDGGAM
FVTDGSAVSCGGWWLGNTAAARGGAVRLQH
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mRNA from alignment at Ecto-sp9_F_contig10060:1099..1340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10060.101.1 ID=mRNA_Ecto-sp9_F_contig10060.101.1|Name=mRNA_Ecto-sp9_F_contig10060.101.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=242bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10060:1099..1340+ (Ectocarpus species9 EcSCA_722f female)
TCCACCCTGACGTTCAACAAAACAAACTTCATCGGGAACGTCGCTTGGAG
TAACGGTGGGGCCGTGTACGTGTCGGATGGATCTTTCGTGTCGTGCGCTG
ACGGGACCACCTTCGTCGAAAACGAGGCGGGAACCGACGGCGGCGCCATG
TTCGTGACCGACGGCTCGGCGGTCTCGTGCGGTGGCTGGTGGCTTGGCAA
CACGGCAGCCGCTCGAGGGGGCGCGGTGCGGCTTCAGCACGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10060:1099..1340+

>mRNA_Ecto-sp9_F_contig10060.101.1 ID=mRNA_Ecto-sp9_F_contig10060.101.1|Name=mRNA_Ecto-sp9_F_contig10060.101.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10060:1099..1340+ (Ectocarpus species9 EcSCA_722f female)
TCCACCCTGACGTTCAACAAAACAAACTTCATCGGGAACGTCGCTTGGAG
TAACGGTGGGGCCGTGTACGTGTCGGATGGATCTTTCGTGTCGTGCGCTG
ACGGGACCACCTTCGTCGAAAACGAGGCGGGAACCGACGGCGGCGCCATG
TTCGTGACCGACGGCTCGGCGGTCTCGTGCGGTGGCTGGTGGCTTGGCAA
CACGGCAGCCGCTCGAGGGGGCGCGGTGCGGCTTCAGCACTCCACCCTGA
CGTTCAACAAAACAAACTTCATCGGGAACGTCGCTTGGAGTAACGGTGGG
GCCGTGTACGTGTCGGATGGATCTTTCGTGTCGTGCGCTGACGGGACCAC
CTTCGTCGAAAACGAGGCGGGAACCGACGGCGGCGCCATGTTCGTGACCG
ACGGCTCGGCGGTCTCGTGCGGTGGCTGGTGGCTTGGCAACACGGCAGCC
GCTCGAGGGGGCGCGGTGCGGCTTCAGCAC
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