mRNA_Ecto-sp9_F_contig9967.18032.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9967.18032.1
Unique NamemRNA_Ecto-sp9_F_contig9967.18032.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9967.18032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N7_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 5.570e-46
Identity = 83/94 (88.30%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 MGGNDEEDSRATEPVTAAEVNIASDGSVVGGPDEADVAGLIEEKKDEEGETAVASSTESSSCSPTGGDGGRKWKGLHVGVWLAIGAGVAVGAAL 282
            MGGNDEED RA+EPVTAAEV+IASDGSVVGGPDEADVAGLIEE KDEEGETAVASSTE      TGGDGGRK KGLHVGVWLAIGAGVAVGAAL
Sbjct:    1 MGGNDEEDPRASEPVTAAEVDIASDGSVVGGPDEADVAGLIEETKDEEGETAVASSTEXXXXXXTGGDGGRKRKGLHVGVWLAIGAGVAVGAAL 94
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BLAST of mRNA_Ecto-sp9_F_contig9967.18032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q5_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 5.820e-43
Identity = 78/100 (78.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 MGGNDEEDSRATEPVTAAEVNIASDGSVVGGPDEADVAGLIEEKKDEEGETA-VASSTESSSCSPTGGDGGRKWKGLHVGVWLAIGAGVAVGAALWSRRR 297
            + GNDEEDSRA EPV AAE+ +AS+ + +GGPD A VAGLIEE KDEEGETA VASSTESSS SPTGGDG  KWKG+H+GVWLA+GAGVAVGAALWSRRR
Sbjct:  100 VAGNDEEDSRAIEPVIAAEMPVASNENTLGGPDVAHVAGLIEESKDEEGETAAVASSTESSSSSPTGGDGRHKWKGIHIGVWLAVGAGVAVGAALWSRRR 199
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BLAST of mRNA_Ecto-sp9_F_contig9967.18032.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.080e-21
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   13 DEEDSRATEPVTAAEVNIASDGSVVGGPDEADVAGLIEEKKDEEGETAVASSTESSSCSPTGGDGGRK 216
            DEEDSRAT+PVTAAEV IAS+ + + GPD ADVAGL EE KDEEG+TAVASSTESSS SPTGGDGG K
Sbjct:   76 DEEDSRATDPVTAAEVPIASNENTLAGPDAADVAGLFEEAKDEEGKTAVASSTESSS-SPTGGDGGHK 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9967.18032.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.570e-4688.30protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.820e-4378.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.080e-2179.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9967contigEcto-sp9_F_contig9967:2417..2751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008540.1
Exons1
Model size335
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.5600278-CDS-Ecto-sp9_F_contig9967:2416..27161622931093.5600278-CDS-Ecto-sp9_F_contig9967:2416..2716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9967 2417..2716 +
1692279030.1985564-CDS-Ecto-sp9_F_contig9967:2416..27161692279030.1985564-CDS-Ecto-sp9_F_contig9967:2416..2716Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9967 2417..2716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.5790086-UTR-Ecto-sp9_F_contig9967:2716..27511622931093.5790086-UTR-Ecto-sp9_F_contig9967:2716..2751Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9967 2717..2751 +
1692279030.2159553-UTR-Ecto-sp9_F_contig9967:2716..27511692279030.2159553-UTR-Ecto-sp9_F_contig9967:2716..2751Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9967 2717..2751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9967.18032.1prot_Ecto-sp9_F_contig9967.18032.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9967 2417..2716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9967.18032.1

>prot_Ecto-sp9_F_contig9967.18032.1 ID=prot_Ecto-sp9_F_contig9967.18032.1|Name=mRNA_Ecto-sp9_F_contig9967.18032.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=100bp
MGGNDEEDSRATEPVTAAEVNIASDGSVVGGPDEADVAGLIEEKKDEEGE
TAVASSTESSSCSPTGGDGGRKWKGLHVGVWLAIGAGVAVGAALWSRRR*
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mRNA from alignment at Ecto-sp9_F_contig9967:2417..2751+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9967.18032.1 ID=mRNA_Ecto-sp9_F_contig9967.18032.1|Name=mRNA_Ecto-sp9_F_contig9967.18032.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=335bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9967:2417..2751+ (Ectocarpus species9 EcSCA_722f female)
ATGGGAGGAAATGACGAGGAGGACTCCAGGGCCACTGAACCAGTCACCGC
GGCCGAGGTGAATATCGCAAGCGACGGGAGCGTGGTGGGAGGGCCAGATG
AGGCTGATGTAGCGGGTTTGATCGAGGAAAAGAAGGATGAGGAGGGCGAG
ACAGCGGTGGCATCATCAACGGAGTCTTCTTCTTGTTCTCCCACGGGCGG
CGACGGAGGACGCAAGTGGAAGGGACTGCACGTAGGGGTCTGGCTAGCCA
TCGGTGCCGGCGTTGCTGTCGGGGCTGCCCTGTGGTCGCGACGCCGCTGA
GGCCACCCCACGAAGCGTCGCTTGACAAAAGACAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9967:2417..2751+

>mRNA_Ecto-sp9_F_contig9967.18032.1 ID=mRNA_Ecto-sp9_F_contig9967.18032.1|Name=mRNA_Ecto-sp9_F_contig9967.18032.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9967:2417..2751+ (Ectocarpus species9 EcSCA_722f female)
ATGGGAGGAAATGACGAGGAGGACTCCAGGGCCACTGAACCAGTCACCGC
GGCCGAGGTGAATATCGCAAGCGACGGGAGCGTGGTGGGAGGGCCAGATG
AGGCTGATGTAGCGGGTTTGATCGAGGAAAAGAAGGATGAGGAGGGCGAG
ACAGCGGTGGCATCATCAACGGAGTCTTCTTCTTGTTCTCCCACGGGCGG
CGACGGAGGACGCAAGTGGAAGGGACTGCACGTAGGGGTCTGGCTAGCCA
TCGGTGCCGGCGTTGCTGTCGGGGCTGCCCTGTGGTCGCGACGCCGCTGA
ATGGGAGGAAATGACGAGGAGGACTCCAGGGCCACTGAACCAGTCACCGC
GGCCGAGGTGAATATCGCAAGCGACGGGAGCGTGGTGGGAGGGCCAGATG
AGGCTGATGTAGCGGGTTTGATCGAGGAAAAGAAGGATGAGGAGGGCGAG
ACAGCGGTGGCATCATCAACGGAGTCTTCTTCTTGTTCTCCCACGGGCGG
CGACGGAGGACGCAAGTGGAAGGGACTGCACGTAGGGGTCTGGCTAGCCA
TCGGTGCCGGCGTTGCTGTCGGGGCTGCCCTGTGGTCGCGACGCCGCTGA
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