mRNA_Ecto-sp9_F_contig9937.18003.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9937.18003.1
Unique NamemRNA_Ecto-sp9_F_contig9937.18003.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9937.18003.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA1_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 1.550e-124
Identity = 227/322 (70.50%), Postives = 236/322 (73.29%), Query Frame = 1 
Query:  181 ATPDLALLPRVVEDTGHRSIAKRDVRPQGTTMDATVAVLAFVQVLSAPKPQHMTKAEKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAALRSNKCCPAGAERLQELLSPLLAVWKTAKLVIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAVSA----DATNPSGTRNERFRCRVTPC-----TTERLHPVAVGFTTIRGMNLFFVSDRKSISFILSPLTVPTASAARQAALGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSSPSPPPTPSLGARTSPLGSRRCQGGPRSPRRRRRRWCRR 1119
            ATPDLALLPRVV D GHRSIAKRDVRPQGTTMDATVAVLA VQVLSAPKPQHMTK EKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAALRSNKCCP GAERL+ELLSPLLA+WKTAK VIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTA  A        PS    +R     T C     TT +   +     +    +     D+ S S +         SAA QAALGA    XXXXXXXXXXX                LR SPSPPPTPSLGARTSPLGSRRCQGGPRSP RRR  WCRR
Sbjct:   38 ATPDLALLPRVVNDAGHRSIAKRDVRPQGTTMDATVAVLASVQVLSAPKPQHMTKTEKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAALRSNKCCPTGAERLRELLSPLLAMWKTAKFVIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAAGAAIFWPEVAPSKGLQDRTATFATLCQGKGETTAKQQQLEGQLASSSASSPLSSPDKSSKSKVFFAYPCHHRSAAHQAALGAAAPWXXXXXXXXXXXAHFRRPLLRRHHLHR-LRPSPSPPPTPSLGARTSPLGSRRCQGGPRSPTRRRPHWCRR 358
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BLAST of mRNA_Ecto-sp9_F_contig9937.18003.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK84_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 9.780e-90
Identity = 144/169 (85.21%), Postives = 153/169 (90.53%), Query Frame = 1 
Query:  181 ATPDLALLPRVVEDTGHRSIAKRDVRPQGTTMDATVAVLAFVQVLSAPKPQHMTKAEKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAALRSNKCCPAGAERLQELLSPLLAVWKTAKLVIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAVSA 687
            ATPD AL PRVV DTGHRSIAK DVRP+GTTMDAT A+LA  Q +SAPKPQHMTKAEKRV V +VGRLKTAIDAKDACDVPAVGLL+LSVKCAAINAALRSNKCCPAGAERL+ELLSPLLA+WKTAK VIR SKEWVTPDHQA+AFNLIGLHLAEC+KAL P KTA  A
Sbjct:   38 ATPDQALPPRVVNDTGHRSIAKHDVRPRGTTMDATDAILASAQAVSAPKPQHMTKAEKRVTVIIVGRLKTAIDAKDACDVPAVGLLTLSVKCAAINAALRSNKCCPAGAERLRELLSPLLAMWKTAKFVIRGSKEWVTPDHQAEAFNLIGLHLAECYKALKPTKTAAGA 206
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9937.18003.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM82_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.930e-25
Identity = 72/164 (43.90%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:  256 RPQGTTMDA--TVAVLAFVQVL-SAPKPQHMTKAEKRVAVDVVGRLKTAIDAKDACDVPAVGLLSLSVKCAAINAAL-RSNKCCPAGAERLQELLSPLLAVWKTAKLVIRSSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAVSADATNPSGTRNERFRCR 735
            RP   TM +  T  V AF     S      ++KA + +A ++VGRL+TAI+  DACD+PA GLL +S KCAA+ A L  S+K CP   +RL ELLS L ++W   K VIR+S EWV+   Q +A +L GLHLA  H  L  IK + S  +  P    NE  + R
Sbjct:   45 RPTVNTMVSKRTTPVCAFPPXXXSTTSHLRISKAGRSIAANIVGRLRTAIETGDACDMPAAGLLDMSGKCAAMKARLGSSSKRCPTEVQRLTELLSSLFSMWANIKSVIRNSNEWVSLTDQKEAMDLFGLHLAHSHALLRNIKNSTSTASFWPEVETNEALQTR 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9937.18003.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.550e-12470.50protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.780e-9085.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.930e-2543.90protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9937contigEcto-sp9_F_contig9937:228..2669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_003330.1
Exons4
Model size1119
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9937.18003.1prot_Ecto-sp9_F_contig9937.18003.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9937 957..2669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.7466304-UTR-Ecto-sp9_F_contig9937:227..3941622931089.7466304-UTR-Ecto-sp9_F_contig9937:227..394Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9937 228..394 +
1692279028.5350447-UTR-Ecto-sp9_F_contig9937:227..3941692279028.5350447-UTR-Ecto-sp9_F_contig9937:227..394Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9937 228..394 +
1622931089.762918-UTR-Ecto-sp9_F_contig9937:850..9561622931089.762918-UTR-Ecto-sp9_F_contig9937:850..956Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9937 851..956 +
1692279028.545751-UTR-Ecto-sp9_F_contig9937:850..9561692279028.545751-UTR-Ecto-sp9_F_contig9937:850..956Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9937 851..956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.782339-CDS-Ecto-sp9_F_contig9937:956..12551622931089.782339-CDS-Ecto-sp9_F_contig9937:956..1255Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9937 957..1255 +
1692279028.5567944-CDS-Ecto-sp9_F_contig9937:956..12551692279028.5567944-CDS-Ecto-sp9_F_contig9937:956..1255Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9937 957..1255 +
1622931089.7946775-CDS-Ecto-sp9_F_contig9937:1616..17521622931089.7946775-CDS-Ecto-sp9_F_contig9937:1616..1752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9937 1617..1752 +
1692279028.5686662-CDS-Ecto-sp9_F_contig9937:1616..17521692279028.5686662-CDS-Ecto-sp9_F_contig9937:1616..1752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9937 1617..1752 +
1622931089.8144283-CDS-Ecto-sp9_F_contig9937:2258..26691622931089.8144283-CDS-Ecto-sp9_F_contig9937:2258..2669Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9937 2259..2669 +
1692279028.5795846-CDS-Ecto-sp9_F_contig9937:2258..26691692279028.5795846-CDS-Ecto-sp9_F_contig9937:2258..2669Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9937 2259..2669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9937.18003.1

>prot_Ecto-sp9_F_contig9937.18003.1 ID=prot_Ecto-sp9_F_contig9937.18003.1|Name=mRNA_Ecto-sp9_F_contig9937.18003.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=282bp
MDATVAVLAFVQVLSAPKPQHMTKAEKRVAVDVVGRLKTAIDAKDACDVP
AVGLLSLSVKCAAINAALRSNKCCPAGAERLQELLSPLLAVWKTAKLVIR
SSKEWVTPDHQAKAFNLIGLHLAECHKALLPIKTAVSADATNPSGTRNER
FRCRVTPCTTERLHPVAVGFTTIRGMNLFFVSDRKSISFILSPLTVPTAS
AARQAALGAAASRPPRTTTTTTTPPAHFRRPLLRRRHLHHLRSSPSPPPT
PSLGARTSPLGSRRCQGGPRSPRRRRRRWCRR
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mRNA from alignment at Ecto-sp9_F_contig9937:228..2669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9937.18003.1 ID=mRNA_Ecto-sp9_F_contig9937.18003.1|Name=mRNA_Ecto-sp9_F_contig9937.18003.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2442bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9937:228..2669+ (Ectocarpus species9 EcSCA_722f female)
ATGAAAACTATGCAGAGAGTGCTGGCGAAGATATTCCTCGGCGACCCAAC
TTTGCCAGAGAGTTCCCCATGCTCTACACGGCTTTCGTCTGCACCTCTCC
GGTGCTGCCATCAAGATCCTCACCGACATGTCGGGCGGTGGCCCGTCGAT
CATCGGCGCAACAAGCGGTGAGACGTTTAACAGCAGTAGTTTGTAGACAA
AGACTTTAGTATCACATAGAGACTCGAGACAATTTCTCATGTACATACTG
TAGAGTCTACACCTTGAATAACATACATACATACATGCATAGAGACACGA
TATATTCCAGATGTCTTACGACGTACCCCAGTAGTTTGGATGGTTGGTTT
GTACTGTTGCGGGATTGTGCGATGTAGCGACCAGGACAATGATGATGGCG
ACCTAACCAAGTGAGGTGCCCGACGTGCAGAACGCTGTGTAAGAGACGGG
GAACGCTCTCGTAAGGCCTTTCCCTGTAAATGTATCCGCTGTTTGATCGT
GAAACATGATCAACTAAGCGCTAAACACAGACATGAAGAAGTTAGTCTAG
AAAATTGCTGTATTTTACAATATTTAATGACGATTTCGAAATGAACGACC
TTCATTCCCCCCACTTTATACAGGTGAACACCCCTTGCGACACCCGACCT
TGCGCTGCTGCCCCGCGTCGTCGAAGACACCGGCCACCGTTCGATCGCGA
AGCGTGATGTCCGCCCTCAGGGAACCACGATGGACGCTACGGTTGCGGTC
CTGGCGTTCGTGCAAGTCCTTTCGGCGCCCAAGCCCCAACACATGACGAA
GGCGGAGAAGCGGGTCGCCGTCGACGTCGTCGGCCGCCTCAAGACGGCGA
TAGACGCGAAGGATGCATGTGACGTTCCAGCGGTCGGCCTTCTGAGCCTC
TCGGTCAAGTGCGCTGCCATCAACGCAGCGTTGCGCAGCAACAAGTGCTG
CCCGGCCGGTGCGGAGCGCCTCCAGGAGCTCTTGTCCCCGCTGTTGGCCG
TGTGGAAGACCGCTAAGTTGGTCATCCGGTGAGTTGTTATTGGGAAGCAG
CCCTTTCTTTCTTTTTCGGGCTGGAGGACGTGCAATCTGTGAAGAACGCG
TTGAAGGGTGGGCCAAGCGCGGGTACTTGGCCAACGCGTCCAATATTTGG
AAACGTGGCGAAATCTGGTCTAGCCCTACAGCGGAATTTGTAGTTCATTC
ATTGAGGAAAACTTCTTGGTTCAGCAATAATTCAGGTTACCATGAGATGT
TGCACTGCCCCCCTTCACCTCTTAACAACTCGACCCTATACTTTCATCGG
AGGCAAGCCGTCGACCCAGACATTGTACTGTGACCAACCGCAAGCACTCG
CCCTACTGCCATCCGTGTATCCCCTCCGGGCGACACCAGGAGCTCGAAGG
AATGGGTTACCCCGGACCACCAAGCAAAGGCCTTCAACCTAATCGGCCTC
CACCTCGCCGAGTGCCACAAGGCACTCTTGCCGATCAAGACTGCGGTGAG
TGCTGACGCGACGAATCCGTCAGGCGTTTGGAGATTGGAACCACACATGC
TGCCGCACGTTCAGACTCGTCGTGCTCGAGAAGGCATGGCTCCCGTGTCA
CCCAGCGTAGTGCTATATTTTCTGTTTCCCGGTACCCAAGCTGTCGGTAT
TGTACAACCGACCGTAGGTATGCTTCGACCCCCACCTCCCCCCCGTATTG
ACAGTCCCTCCAAACAACACGACCGAGCAGCGGGGACAATGTTTCTTCAA
TATTTGTGTTCCCTGCATACAAGGTGCTATTCTTCGAAGAACATTCCCCC
GCTACTCTTTGAAGATGTTGTTCGGAGTGTCCCCCCCCAGTTGTTTTCAT
TTCCCACCGGTATTCATTCGCGATTGCTTCCGCATGCATCATCAACACAT
GAGTTTGGGGTAGATCAAGACGTCGTCTGTGCTAGGCACTACGAGTGCAT
TGTGGTGTGTAGAAGGCAGTACGTGGCGGTGCAAGTTGGTACACCCGCTG
CCGTTGTTGTTGGTTGTGATGGTCTCTTAAGACTCGGAATGAACGTTTTC
GTTGTCGGGTCACACCCTGTACCACGGAACGCCTCCATCCCGTTGCTGTT
GGTTTTACTACAATACGTGGGATGAACCTCTTCTTTGTCTCAGACCGGAA
ATCGATCTCCTTCATTTTGTCCCCCTTGACCGTCCCCACCGCCTCGGCAG
CACGTCAAGCGGCACTGGGAGCGGCCGCATCGCGGCCCCCTCGGACAACG
ACGACCACGACGACGCCACCGGCACACTTTCGCCGTCCTCTTCTTCGCCG
TCGCCATCTACACCATCTTCGTTCTTCTCCATCTCCTCCTCCCACGCCTT
CTCTGGGAGCGAGAACATCACCGTTAGGCAGTCGTCGTTGTCAAGGTGGA
CCAAGATCGCCAAGAAGGAGGCGTCGACGCTGGTGTCGACGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9937:228..2669+

>mRNA_Ecto-sp9_F_contig9937.18003.1 ID=mRNA_Ecto-sp9_F_contig9937.18003.1|Name=mRNA_Ecto-sp9_F_contig9937.18003.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9937:228..2669+ (Ectocarpus species9 EcSCA_722f female)
ATGGACGCTACGGTTGCGGTCCTGGCGTTCGTGCAAGTCCTTTCGGCGCC
CAAGCCCCAACACATGACGAAGGCGGAGAAGCGGGTCGCCGTCGACGTCG
TCGGCCGCCTCAAGACGGCGATAGACGCGAAGGATGCATGTGACGTTCCA
GCGGTCGGCCTTCTGAGCCTCTCGGTCAAGTGCGCTGCCATCAACGCAGC
GTTGCGCAGCAACAAGTGCTGCCCGGCCGGTGCGGAGCGCCTCCAGGAGC
TCTTGTCCCCGCTGTTGGCCGTGTGGAAGACCGCTAAGTTGGTCATCCGA
TGGACGCTACGGTTGCGGTCCTGGCGTTCGTGCAAGTCCTTTCGGCGCCC
AAGCCCCAACACATGACGAAGGCGGAGAAGCGGGTCGCCGTCGACGTCGT
CGGCCGCCTCAAGACGGCGATAGACGCGAAGGATGCATGTGACGTTCCAG
CGGTCGGCCTTCTGAGCCTCTCGGTCAAGTGCGCTGCCATCAACGCAGCG
TTGCGCAGCAACAAGTGCTGCCCGGCCGGTGCGGAGCGCCTCCAGGAGCT
CTTGTCCCCGCTGTTGGCCGTGTGGAAGACCGCTAAGTTGGTCATCCGGA
GCTCGAAGGAATGGGTTACCCCGGACCACCAAGCAAAGGCCTTCAACCTA
ATCGGCCTCCACCTCGCCGAGTGCCACAAGGCACTCTTGCCGATCAAGAC
TGCGGTGAGTGCTGACGCGACGAATCCGTCAGGCGAGCTCGAAGGAATGG
GTTACCCCGGACCACCAAGCAAAGGCCTTCAACCTAATCGGCCTCCACCT
CGCCGAGTGCCACAAGGCACTCTTGCCGATCAAGACTGCGGTGAGTGCTG
ACGCGACGAATCCGTCAGGCACTCGGAATGAACGTTTTCGTTGTCGGGTC
ACACCCTGTACCACGGAACGCCTCCATCCCGTTGCTGTTGGTTTTACTAC
AATACGTGGGATGAACCTCTTCTTTGTCTCAGACCGGAAATCGATCTCCT
TCATTTTGTCCCCCTTGACCGTCCCCACCGCCTCGGCAGCACGTCAAGCG
GCACTGGGAGCGGCCGCATCGCGGCCCCCTCGGACAACGACGACCACGAC
GACGCCACCGGCACACTTTCGCCGTCCTCTTCTTCGCCGTCGCCATCTAC
ACCATCTTCGTTCTTCTCCATCTCCTCCTCCCACGCCTTCTCTGGGAGCG
AGAACATCACCGTTAGGCAGTCGTCGTTGTCAAGGTGGACCAAGATCGCC
AAGAAGGAGGCGTCGACGCTGGTGTCGACGTACTCGGAATGAACGTTTTC
GTTGTCGGGTCACACCCTGTACCACGGAACGCCTCCATCCCGTTGCTGTT
GGTTTTACTACAATACGTGGGATGAACCTCTTCTTTGTCTCAGACCGGAA
ATCGATCTCCTTCATTTTGTCCCCCTTGACCGTCCCCACCGCCTCGGCAG
CACGTCAAGCGGCACTGGGAGCGGCCGCATCGCGGCCCCCTCGGACAACG
ACGACCACGACGACGCCACCGGCACACTTTCGCCGTCCTCTTCTTCGCCG
TCGCCATCTACACCATCTTCGTTCTTCTCCATCTCCTCCTCCCACGCCTT
CTCTGGGAGCGAGAACATCACCGTTAGGCAGTCGTCGTTGTCAAGGTGGA
CCAAGATCGCCAAGAAGGAGGCGTCGACGCTGGTGTCGACGT
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