mRNA_Ecto-sp9_F_contig9914.17983.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9914.17983.1
Unique NamemRNA_Ecto-sp9_F_contig9914.17983.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9914.17983.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX52_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.140e-91
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:    4 SMAVRLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHESKALAGRDDDEDVGWRRETFALLLEAWVAMAEDFEVTGEENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLSLARALAAVDVQV 468
            SMAVRLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHESKALAGRDDDEDVGWRRETFALLLEAWVAMAEDFEVTG ENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLSLARALAAVDVQV
Sbjct:  364 SMAVRLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHESKALAGRDDDEDVGWRRETFALLLEAWVAMAEDFEVTGGENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLSLARALAAVDVQV 518
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9914.17983.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 2.110e-91
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 1 
Query:    4 SMAVRLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHESKALAGRDDDEDVGWRRETFALLLEAWVAMAEDFEVTGEENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLSLARALAAVDVQV 468
            SMAVRLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHESKALAGRDDDEDVGWRRETFALLLE+WVAMAEDFEVT  ENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLSLAR+LAAVDVQV
Sbjct:  364 SMAVRLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHESKALAGRDDDEDVGWRRETFALLLESWVAMAEDFEVTSGENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLSLARSLAAVDVQV 518
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9914.17983.1 vs.
Match: Importin (N-terminal domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2R0D4_PHYPN)

HSP 1 Score: 55.8 bits (133), Expect = 4.220e-6
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:   16 RLVSNFKLSTLGQLDS---FAAFAQHLAALSSRMLHESKALAGRDDDE------DVGWRRETFALLLEAWVAMAEDFEV-------TGEENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLS 432
            RLV+N  L+ L Q +S   F++F + LA+L+S++LH +     R   E      D  W  E   +LL+AWVA+A D ++       +  E +     + +A+ P+ E YL+ +L +  VEA A    EED E+    +A   EQ   AA L RL+
Sbjct:  379 RLVNNIGLTALLQANSGQLFSSFIEELASLTSKLLHSALERIQRHLRENPNEAIDELWELEGVDILLDAWVALANDPQLLEVGVSTSKPEAEQALALLSEASAPVVELYLQVQLELCAVEALAEQDEEEDVEDNAASSAR--EQYELAAALARLN 531
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9914.17983.1 vs.
Match: CRM1_C (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYG7_THAPS)

HSP 1 Score: 55.8 bits (133), Expect = 4.310e-6
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1 
Query:   16 RLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHES----KALAGRDDD-EDVGWRRETFALLLEAWVAMAEDFEVT----GEENQGMRKGMQDATFPLYEQYLEHELTVSRVEAEASVGHEE---DDEEEEIGAADKDEQMCSAACLGRLSL 435
            RL SNF++ TL Q+ SF  F   L A+ + +L  S    + L G  +  E + WR +  A +L+   A+A+D+ +     G++     + +     PLY  Y    + +S +E +  +  EE   DD  EEI A   +E+M SAA LGRL++
Sbjct:  856 RLASNFRIQTLSQISSFPRFLSALCAIGTWILETSLMQCQQLNGDVEAMEGMDWRNDAIAQILQCSDALADDYWIVSGTGGDKATHASQLLATMLAPLYGPYCVCRVQMSSLE-DYFISREEAELDDIREEISALGLEEEMNSAASLGRLNV 1006
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9914.17983.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Importin1.140e-9199.35N-terminal domain-containing protein n=1 Tax=Ectoc... [more]
Importin2.110e-9197.42N-terminal domain-containing protein n=1 Tax=Ectoc... [more]
Importin4.220e-633.55N-terminal domain-containing protein n=13 Tax=Phyt... [more]
CRM1_C4.310e-632.24domain-containing protein n=1 Tax=Thalassiosira ps... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9914contigEcto-sp9_F_contig9914:3366..4883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue1.7e-76
Seed eggNOG ortholog2880.D7FX52
KEGG koko:K18460
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons3
Model size471
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9914.17983.1prot_Ecto-sp9_F_contig9914.17983.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9914 3366..4877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.7576044-CDS-Ecto-sp9_F_contig9914:3365..35191622931086.7576044-CDS-Ecto-sp9_F_contig9914:3365..3519Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9914 3366..3519 -
1692279027.0545478-CDS-Ecto-sp9_F_contig9914:3365..35191692279027.0545478-CDS-Ecto-sp9_F_contig9914:3365..3519Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9914 3366..3519 -
1622931086.772575-CDS-Ecto-sp9_F_contig9914:4159..43351622931086.772575-CDS-Ecto-sp9_F_contig9914:4159..4335Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9914 4160..4335 -
1692279027.0674386-CDS-Ecto-sp9_F_contig9914:4159..43351692279027.0674386-CDS-Ecto-sp9_F_contig9914:4159..4335Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9914 4160..4335 -
1622931086.809538-CDS-Ecto-sp9_F_contig9914:4742..48771622931086.809538-CDS-Ecto-sp9_F_contig9914:4742..4877Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9914 4743..4877 -
1692279027.0787911-CDS-Ecto-sp9_F_contig9914:4742..48771692279027.0787911-CDS-Ecto-sp9_F_contig9914:4742..4877Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9914 4743..4877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.8252819-UTR-Ecto-sp9_F_contig9914:4877..48831622931086.8252819-UTR-Ecto-sp9_F_contig9914:4877..4883Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9914 4878..4883 -
1692279027.0900886-UTR-Ecto-sp9_F_contig9914:4877..48831692279027.0900886-UTR-Ecto-sp9_F_contig9914:4877..4883Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9914 4878..4883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9914.17983.1

>prot_Ecto-sp9_F_contig9914.17983.1 ID=prot_Ecto-sp9_F_contig9914.17983.1|Name=mRNA_Ecto-sp9_F_contig9914.17983.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp
MAVRLVSNFKLSTLGQLDSFAAFAQHLAALSSRMLHESKALAGRDDDEDV
GWRRETFALLLEAWVAMAEDFEVTGEENQGMRKGMQDATFPLYEQYLEHE
LTVSRVEAEASVGHEEDDEEEEIGAADKDEQMCSAACLGRLSLARALAAV
DVQV*
back to top

mRNA from alignment at Ecto-sp9_F_contig9914:3366..4883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9914.17983.1 ID=mRNA_Ecto-sp9_F_contig9914.17983.1|Name=mRNA_Ecto-sp9_F_contig9914.17983.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1518bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9914:3366..4883- (Ectocarpus species9 EcSCA_722f female)
AGCAGCATGGCGGTGCGGCTCGTGTCTAACTTCAAGCTATCTACCCTTGG
CCAGCTAGACTCCTTCGCGGCGTTCGCGCAGCACCTGGCCGCTCTGAGCT
CGAGGATGTTGCACGAGTCAAAGGCCCTCGCCGGACGAGATGTGCGTTGC
TCGTCGTTGTAGTGATGAAGTGCATAGTGTATGTCTACGTGCTTTTTCAC
TGCGAAATACCGTTGCGTCGATCCGAATAGAACTAGTGAAGTCAAAGTTG
GCTACCTACAGCTTTCATGAAGTACTTCGCAACTCTTCACTCCAGGCTAT
TGCGACAGTCGTGTGTTTGTTTGTAGAGCTTAGAGTAACATCCTCGTCGG
GGCTGCTTGTTTGTGGTGTTGAACACCTGAGCGTGTTATCTTCTTGTCGG
CATGTTTGGTAACTGCGGCCCCGCACTACATGAGCCTGTTTTATTACTGT
CGGGCATTTTTCATTGACTGCGGGCTTAACCCGCTCTACATGAGCCTCCT
TCATTATTGTCGGCATTTTTCGTTGACTGCGGGCTTAACCCGCGCTAGGA
CGACGAGGACGTCGGGTGGAGGAGAGAGACGTTCGCCCTCCTGCTGGAGG
CGTGGGTGGCGATGGCGGAGGACTTCGAGGTTACTGGCGAGGAGAACCAG
GGCATGAGGAAGGGCATGCAGGATGCCACGTTCCCGCTGTACGAGCAGTA
CCTCGAGCACGAGCTGACGGTCAGGTGCTTAACTGAACCATTGCCGCTAT
TGTGTCGCTGATGTGGAGACCAGCGTACAATCTCCCCCGACGTGTGTCGA
GGACGTTTGATTTTCTCTCTTTTCACGGTGGTGGCTATTTCATATATCCA
CCCCACAGGGGGGAGAACTTCAGTATACGCACACGGTCGTACGTCATACA
AGCAATGGTTGAAGACGGGCACTTGTCTGCGTCGCGGGCTTTGGCAGCGA
ATGCCGCGTGTTTGACGTATTTGGCGCTTTTACACACACCCACACACCCA
CATCTACGGGGTCCCAGATGACCTCTGCAGTAGAAGCATTTTATTGCTCA
GCCGGTTAGCGCTGCCAATGTAGTACGAGACAACGCCCCACCTACCGCGG
GCCTTGGCGACTGCTGTGTGATTGGCGCTTTTGGCGCTTTGCTTTGGCAT
GTTTTGGACACGTTGGACGTGGTCGACCTATTTGACGTAGTTGATGTGTT
TGACGCGTTTGACATGATTTTGACGTCTTTTTTCGTCTTTCGACGTCTTT
GTCGTGTCTGACTTGTTTTGACCGCTTGGCGCGTTTGACGTTCTTGACAT
GGTTTTTACACGTTTTGACGGCTTTCATCATGTGTTTTTGACACGTTTGC
CGTGGTACAAACAGTCGTGTCGAAGCGGAGGCAAGCGTAGGGCACGAAGA
GGACGACGAGGAGGAGGAGATCGGGGCCGCGGACAAGGACGAGCAGATGT
GCTCCGCCGCCTGCCTGGGCCGGCTGAGCCTGGCCCGCGCCCTCGCCGCT
GTCGATGTCCAGGTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9914:3366..4883-

>mRNA_Ecto-sp9_F_contig9914.17983.1 ID=mRNA_Ecto-sp9_F_contig9914.17983.1|Name=mRNA_Ecto-sp9_F_contig9914.17983.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9914:3366..4883- (Ectocarpus species9 EcSCA_722f female)
ATGGCGGTGCGGCTCGTGTCTAACTTCAAGCTATCTACCCTTGGCCAGCT
AGACTCCTTCGCGGCGTTCGCGCAGCACCTGGCCGCTCTGAGCTCGAGGA
TGTTGCACGAGTCAAAGGCCCTCGCCGGACGAGATATGGCGGTGCGGCTC
GTGTCTAACTTCAAGCTATCTACCCTTGGCCAGCTAGACTCCTTCGCGGC
GTTCGCGCAGCACCTGGCCGCTCTGAGCTCGAGGATGTTGCACGAGTCAA
AGGCCCTCGCCGGACGAGATGACGACGAGGACGTCGGGTGGAGGAGAGAG
ACGTTCGCCCTCCTGCTGGAGGCGTGGGTGGCGATGGCGGAGGACTTCGA
GGTTACTGGCGAGGAGAACCAGGGCATGAGGAAGGGCATGCAGGATGCCA
CGTTCCCGCTGTACGAGCAGTACCTCGAGCACGAGCTGACGGTCAGGACG
ACGAGGACGTCGGGTGGAGGAGAGAGACGTTCGCCCTCCTGCTGGAGGCG
TGGGTGGCGATGGCGGAGGACTTCGAGGTTACTGGCGAGGAGAACCAGGG
CATGAGGAAGGGCATGCAGGATGCCACGTTCCCGCTGTACGAGCAGTACC
TCGAGCACGAGCTGACGGTCAGTCGTGTCGAAGCGGAGGCAAGCGTAGGG
CACGAAGAGGACGACGAGGAGGAGGAGATCGGGGCCGCGGACAAGGACGA
GCAGATGTGCTCCGCCGCCTGCCTGGGCCGGCTGAGCCTGGCCCGCGCCC
TCGCCGCTGTCGATGTCCAGGTGTGATCGTGTCGAAGCGGAGGCAAGCGT
AGGGCACGAAGAGGACGACGAGGAGGAGGAGATCGGGGCCGCGGACAAGG
ACGAGCAGATGTGCTCCGCCGCCTGCCTGGGCCGGCTGAGCCTGGCCCGC
GCCCTCGCCGCTGTCGATGTCCAGGTGTGA
back to top