mRNA_Ecto-sp9_F_contig9912.17982.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9912.17982.1
Unique NamemRNA_Ecto-sp9_F_contig9912.17982.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R2_9PHAE)

HSP 1 Score: 456 bits (1173), Expect = 1.530e-155
Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 1
Query:    1 LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
            LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRD RVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVT+H HEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV
Sbjct:  107 LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHNHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 339          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT7_ECTSI)

HSP 1 Score: 405 bits (1041), Expect = 7.700e-138
Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 1
Query:   79 MLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
            MLAKDDTLVDGFNTVRFEIRYLRD RVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVT+HTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGK+LPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV
Sbjct:    1 MLAKDDTLVDGFNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKRLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 207          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R7_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.260e-43
Identity = 103/270 (38.15%), Postives = 141/270 (52.22%), Query Frame = 1
Query:  133 IRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKV------------------------------------------------------------SGVLWRELVSKNMHDYKITAL---------------------LDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
            +R+  D RVLVAECFAF +D    ++V+DIDGTIT+SDV GL+MT SPG+ TDH   GICSLL  M +E GA ++YLTSRP+ LA +TR FL    Q+G  LPLGPL  C  KV                                                            + V++RE+++K+MH++K +AL                      ++A  F  AGR   + V+AAGIGNR  DA AY+AAG+P+DFI +ID+ +N+++
Sbjct:  702 VRFRGDPRVLVAECFAFAFDARDRLLVMDIDGTITKSDVQGLIMTFSPGM-TDHLQPGICSLLHHMSNE-GAHILYLTSRPVVLAKRTRAFLMDLRQDGLLLPLGPLLTCKSKVRSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPSTLTDVVYREVIAKDMHEFKGSALQASLISALSAKNVTSGLQMLHAEVAEVFFRAGRPEDDPVYAAGIGNRETDAFAYQAAGVPEDFICIIDSSANIQI 969          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y642_HETAK)

HSP 1 Score: 144 bits (362), Expect = 1.410e-37
Identity = 84/219 (38.36%), Postives = 132/219 (60.27%), Query Frame = 1
Query:   58 PALEALAMLAKDDTLVDGFNTVRFEIRY--LRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRVRVW 708
            P  E LA+L     L+DG N +RFE+ +   +  R++ AE   FVWDV+  +++ DIDGTIT++DV G + T +    T+  H+GIC  L+ +V++ G  ++++TSRP+ L   T+TFL++  Q+G  +P GPL  C + +  V+++E+V+K +H YK   L  + R F  +GR   E +F  G GN+  DA AY    +   FIF+I  +S  R+ VW
Sbjct:  100 PTSEQLAVLG----LMDGKNNLRFELTFNDQKGMRLIHAETSCFVWDVDCRIVLCDIDGTITKTDVGGFVGTSTNPEDTNFVHDGICPFLSDLVED-GINIMFVTSRPMMLKQLTKTFLSTICQDGCFIPEGPLFNCPQNLLNVVFQEVVTKTIHRYKTGVLQAVMRLFELSGRENPEDLFRLGFGNKPTDAKAYEQVCVRSQFIFIIGKDS--RIVVW 311          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF08_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.990e-36
Identity = 106/289 (36.68%), Postives = 141/289 (48.79%), Query Frame = 1
Query:  100 LVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTP-MIVVDIDGTITRSDVSGLMMTLS------PGLVTDHTHEGICSLLARMVDEA--------------------------GAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEK-------------------------------------VSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAG--------------IPKDFIFLIDTESNLRVRVWFV 714
            L+ G NT+RFE R   D RVLVA+C AF  D     ++VVDIDGTITRSD  GL+MTL       PG V DH   G+ SLL  +  E                           GAQ++YLT+RP+++A +TR FL    Q+G  LPLGPL   L K                                     ++ V++REL++++MH +K   L D+A  FR AGR     VFAAG+GNR+ DA+AY+ AG              IP +FI +ID ++   +R W V
Sbjct:  619 LLRGVNTLRFEARVRGDPRVLVADCLAFAMDAAAARVVVVDIDGTITRSDAHGLLMTLRLLMMLRPGTV-DHLQPGVYSLLHHVAAEEKKKRRXXXXXXXXXXXXXXXXXXXXXGAQLLYLTARPLAMAPRTRAFLVGATQDGLVLPLGPLVTNLCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARERGLTDVVYRELIARDMHRFKGQVLQDVAAVFRSAGRHARSRVFAAGVGNRLTDALAYQGAGGTPFRXXXXXXMAGIPDEFICIIDPKTA--IRTWSV 904          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Lipinlike (protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAE7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.320e-33
Identity = 85/226 (37.61%), Postives = 119/226 (52.65%), Query Frame = 1
Query:   19 EDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
            E G C F  G L P ++ALA +   +   D  N VRFE        +   EC  +VW     +I+VD+DGT+T SDV G + TL  G   D  H G C    ++  E   +V+YLT+RP+  A+ +R  L +  Q    LP GPL      ++G L  E+V+KN H +K   L ++      AGR     +F AG GNR  D +AY+ AGI  D IFLID+ S+++
Sbjct:  179 ERGRCVFQSGSLTPPIDALANV---ELYEDNANYVRFEHYQRSTCCIRYVECRLYVWHPEESVIIVDLDGTLTVSDVEGHIRTLRLGQY-DFLHRGTCQFFTKL-HELQMRVLYLTARPLDWASASRNHLENAIQLKHVLPPGPLITNSNGLTGALLTEVVNKNPHIFKRQVLQEIQLCLIHAGRVTEHPIFVAGFGNRSSDVLAYKDAGIELDMIFLIDSTSSIK 399          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Phosphatidate (phosphatase LPIN3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6Z4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.880e-32
Identity = 85/246 (34.55%), Postives = 130/246 (52.85%), Query Frame = 1
Query:    7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVD--GFNTVRFEIRYLRDS--RVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLM---MTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEG-------KKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGE-AVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
            + + + G   F  G+L P  E L  +    +L+D  G + ++FE RY  +   R+   E   ++WD +  ++V DIDGTITRSDV G++   +    G    H H G+C L   ++DE  A ++YLT+RP++L   TR+++   EQ         ++LP GP+      ++    RE+V ++ H +K   L  L   F  AGR      VF A  GN+  DAVAYRA G P   IF+I T+S ++V
Sbjct:   75 MEIGDGGKAQFPSGKLAPDPEVLGNVT---SLLDELGPHKLKFEHRYTANGEYRLNYVEALFWLWDSSDSIVVSDIDGTITRSDVGGMINGVLGARMGWKKGHAHPGVCFLYNHLIDETNAHIMYLTARPLNLINDTRSYIYELEQPVSSSSMTMRQLPPGPIITDTTNLTSSFRREVVDRSSHVFKTEMLSQLRDCFTNAGRDIRRYPVFLATFGNKDTDAVAYRAVGAPPVTIFIIGTDSRVQV 317          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Lipin (n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXZ7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.730e-32
Identity = 86/230 (37.39%), Postives = 118/230 (51.30%), Query Frame = 1
Query:    7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
            + +QE G CTF  G +    E L      D   +  N VRFE      + V   +    +W  N   +VVD+DGT+T SDV G + TL  G   D  H G C    ++  E G ++VYLT+RP+  A+ +RT L + EQ+  KLP G L      ++G L+ E+V+K  H +KI  L +L      AGR     VF AG GNR  D VAY   GI    IF++D  SN++
Sbjct:  201 MELQERGRCTFITGGIMIPPEDLLFA---DLSEEYPNLVRFEHYQKYTNTVRYVDTKLHLWGPNESAVVVDLDGTLTISDVEGHIRTLRLGQY-DFLHAGACDFFTKL-HELGLRIVYLTARPLDWASASRTHLENAEQQSIKLPPGVLITNSTGLTGALFTEVVNKTPHLFKIQVLNELQLTLIHAGRVTEHPVFVAGFGNRPTDIVAYEEVGIDPSLIFMLDPYSNVK 425          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Protein (involved in plasmid maintenance/nuclear protein involved in lipid metabolism n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5S1_PLAHL)

HSP 1 Score: 130 bits (328), Expect = 1.600e-31
Identity = 85/230 (36.96%), Postives = 119/230 (51.74%), Query Frame = 1
Query:    7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
            + +QE G CTF  G L    E L      D   +  N VRFE      + V   +    +W  N  ++VVD+DGT+T SDV G + TL  G   D  H G C    ++  E G ++VYLT+RP+  A+ +RT L + EQ+   LP G L      ++G L+ E+V+K  H +KI  L +L      AGR     VF AG GNR  D VAY+  G+    IF++D  SN++
Sbjct:  225 MELQERGRCTFVTGGLVIPPEDLCFA---DLTENRPNLVRFEHYQKYTNTVRYVDTKLHLWGPNESVVVVDLDGTLTISDVEGHIRTLRLGQY-DFLHAGACDFFTKL-HELGMRIVYLTARPLDWASASRTHLENAEQQSISLPPGVLITNSTGLTGALFTEVVNKTPHLFKIQVLNELQLTLIHAGRVTEHPVFVAGFGNRPTDIVAYQEVGMDPSLIFMLDPYSNVK 449          
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2A8_PYTOL)

HSP 1 Score: 130 bits (327), Expect = 1.610e-31
Identity = 85/230 (36.96%), Postives = 115/230 (50.00%), Query Frame = 1
Query:    7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
            +++ E G CTF  G L P    L    K D   D  N VRFE        +   E    +W  N  ++V D+DGT+T SDV G + TL  G   D  H G C    ++  E   +++YLT+RP+  A+ +RT L + +Q+   LP G L      ++G L  E+V+KN H +K   L ++      AGR     VF AG GNR  D VAY   GI    IFLID  SNL+
Sbjct:  192 MQLLERGRCTFVTGGLTPPKTDLL---KVDLFDDRPNLVRFEHFQRSSDTIRYVESRLHLWGPNESVVVADLDGTLTISDVEGHIRTLRLGQY-DFLHHGACDFFNKL-HELDMRIIYLTARPLDWASASRTHLENAKQQTHALPPGVLITNSNGLTGALMTEVVNKNPHVFKAQVLNEIQLTLIHAGRVVEHPVFVAGFGNRPTDVVAYEQVGIDPALIFLIDPYSNLK 416          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
LNS21.530e-15598.71domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
LNS27.700e-13898.55domain-containing protein n=1 Tax=Ectocarpus silic... [more]
LNS24.260e-4338.15domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.410e-3738.36protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
LNS21.990e-3636.68domain-containing protein n=1 Tax=Tribonema minus ... [more]
Lipinlike1.320e-3337.61protein putative n=1 Tax=Albugo laibachii Nc14 Tax... [more]
Phosphatidate4.880e-3234.55phosphatase LPIN3 n=1 Tax=Hondaea fermentalgiana T... [more]
Lipin6.730e-3237.39n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0... [more]
Protein1.600e-3136.96involved in plasmid maintenance/nuclear protein in... [more]
Uncharacterized1.610e-3136.96protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9912contigEcto-sp9_F_contig9912:423..3140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.4
Seed ortholog evalue2.9e-112
Seed eggNOG ortholog2880.D8LKT7
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons4
Model size717
Cds size717
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9912.17982.1prot_Ecto-sp9_F_contig9912.17982.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9912 423..3140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931086.6709929-CDS-Ecto-sp9_F_contig9912:422..6441622931086.6709929-CDS-Ecto-sp9_F_contig9912:422..644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 423..644 -
1692279027.0003033-CDS-Ecto-sp9_F_contig9912:422..6441692279027.0003033-CDS-Ecto-sp9_F_contig9912:422..644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 423..644 -
1622931086.6867206-CDS-Ecto-sp9_F_contig9912:1067..12201622931086.6867206-CDS-Ecto-sp9_F_contig9912:1067..1220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 1068..1220 -
1692279027.0117452-CDS-Ecto-sp9_F_contig9912:1067..12201692279027.0117452-CDS-Ecto-sp9_F_contig9912:1067..1220Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 1068..1220 -
1622931086.703625-CDS-Ecto-sp9_F_contig9912:1632..18371622931086.703625-CDS-Ecto-sp9_F_contig9912:1632..1837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 1633..1837 -
1692279027.022142-CDS-Ecto-sp9_F_contig9912:1632..18371692279027.022142-CDS-Ecto-sp9_F_contig9912:1632..1837Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 1633..1837 -
1622931086.718948-CDS-Ecto-sp9_F_contig9912:3003..31401622931086.718948-CDS-Ecto-sp9_F_contig9912:3003..3140Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 3004..3140 -
1692279027.0396912-CDS-Ecto-sp9_F_contig9912:3003..31401692279027.0396912-CDS-Ecto-sp9_F_contig9912:3003..3140Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9912 3004..3140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9912.17982.1

>prot_Ecto-sp9_F_contig9912.17982.1 ID=prot_Ecto-sp9_F_contig9912.17982.1|Name=mRNA_Ecto-sp9_F_contig9912.17982.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=239bp
LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRD
SRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTH
EGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGP
LQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAA
GIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRVRVWFV*
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mRNA from alignment at Ecto-sp9_F_contig9912:423..3140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9912.17982.1 ID=mRNA_Ecto-sp9_F_contig9912.17982.1|Name=mRNA_Ecto-sp9_F_contig9912.17982.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2718bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9912:423..3140- (Ectocarpus species9 EcSCA_722f female)
CTGTACCTCCGAGTACAGGAGGATGGTTTTTGCACGTTTGCCGACGGGCG GCTGCAGCCGGCGTTGGAGGCCCTGGCGATGCTGGCGAAGGACGACACCC TCGTGGACGGATTCAACACCGTCCGCTTCGAGATCAGGTGCAGAACAAAC TTATCCACGGGTGTTATTATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTTACACGTTAGAAACCGCTCCGGTCTCCGTGTTCCCGGGCGCACCCTC TTGGGGGGCAGTCTCGTTCTTGTGCGTTTGCGATATGTAGATTATATTCT GAAGGTTCGAGTTACAGACGGACGTTGGGGGGATGCACTTGAACCGGGGT TCTCTGCCACCAAAGTCAGACATCTCTTCGTCAACGCCAATGTTGTTGTT GTTGTTGTTGTTGCTGTAATAGTTCGGTCTGAAGTATGCTCAGCACCTTT TTACCAACTGACGCGGTCCGTAGTCTCAGGCTAACTGCCCACGAAAAGGG TGCACCTTCGCGAAAACAAACGCGTCCAGCGTCGCCCCGTTTCTTGCCCG AGAGGTTGGGGAGAGGCGAAGATGCGTGTATCTCGGAAACAAGATTTGTT TGCTCCACCAACCCCATCCCCAACCACTAATTCATGCGCCACGAAGCTGA GCCACCGGGATATATACCAAAACACCAAAACCTCTTTTGTTGGCCGAGGC TCTTTTCTTGTTTTGCCGGTACAAGACCAAAGGCTGGGGGGCCAACAACG GTTGACGTTCGCCGACCGACTGCTCTGCCACAGTTTTCAGATTTGGGTTT GGTGTCATCATCGTAAAAGCCTACTGGTATCTATTGCAACGTCGGGAGGT TTAGGGCCGTCAGCTTTCCGGCCGCAAGGACTCGGCGGAGTGTGCCTGTG CCGCTGCTGGTTTCTCACCTCCTGGTCACAATGCCAGCATCTATGCATAC GTCATGCACGAATCGTGGGCATCTGTCTGCACTTGGTTTGATTGGACATC TGGGGGCTCTGTCTCTCTCTCACCCTGTCTCTCTCGCAATCTCTCTGTCT CTGTCTGTCTGTCTGCCTGTCTGTCTCTGTGTCCCCCCCCCCCTATTTCT GTCTCTTTCTGTCTCCCTCCCTCCTTCCCTCTCTCTCTCTCCCCCCCTCT CTCTCTCTGTCTCTGTCTCTGTCTCCTCTCTCTCTGTGTGTGTGTCGCTG TCCCTGTCTGTTTCCCTCTCGGTCTTTCTCTCTCTCTCTGCCCCCCACCC CCCTCTCTCTATCTCTGTCGATCTTGGAACGCCACTCCCCTAACGCCGCC CAGGTACCTGCGGGACTCGAGGGTCCTCGTGGCCGAGTGCTTCGCCTTCG TGTGGGACGTCAACACTCCCATGATTGTGGTCGACATCGACGGCACCATC ACCAGAAGCGACGTCTCGGGGTTGATGATGACGCTCAGCCCGGGCCTAGT TACCGACCACACCCACGAGGGCATCTGCTCGCTGCTGGCCCGCATGGTGG ACGAAGCGGTGAGTGAAAATGTTTTTATTTTTTCCCCGGCTTGTTTTTTT TTTGTGTGTCGTTGTAGCTACTCTAAATATGCCTTCTTCCTGTTCCTGCG GAATTCGTGTCGAAACCAATCCCACCGACGGGTGACCATATGAACTCAAA ACCTGCAGGGGATGAAACCGTTTCTTGTGGACAGAATGTTTGTGTCTTCC TGTTCCTGGATTCGTGACAAAACCGACCCCGCCGCCGGGTGACCAATGAG CACAGGTCAAGTCTCGTCGGCCGACTACAAACGTTCTCGCCTGACCTACA GCGTGCTGCCTTTTCCCTCCCTCGACCCGCCATCCACATGTTTTGTGTTT GGGGTTACTTTTCTCGGCCATGACACGCCGCCGCTGATCGCGCGGGCGCG CTCGGGGGGGGGGGTTGCAGGGGGCACAGGTGGTGTACCTTACGTCCCGG CCCATCTCTCTTGCGGCCAAGACCCGCACCTTCCTTGCCTCGACGGAGCA AGAGGGGAAGAAGCTACCCCTGGGCCCTCTACAGTGTTGCTTGGAGAAAG TCAGCGGCGTTTTGTGGCGTGAGGTGCGGCGTCTGTGTCTGTTTGCGTCC GTCTCTGTAGCATCGACCGACCGCAGAGAGGTCCGGTAACAACGATTTTC GAAAATATGTAATAATCATAAACAATCGAGGTCCGAGAAGATCCAAGATC AGAAGAAAAAAACTTGTGGGTAAAAAACGATGACTTAGGCTTGCTACTTC CGCGATTGGTGTGGCGAAAAGATCCCAAGGTCGTAATAGGTAGCTTTAGC CCGCTACAGTGGCAGGCAGCCTCCACTTGCTACTACAACCCCCTCCCTTC TCCGGCCGCGTCTTGTTTCCCGTCGGTTTCCCCCCCCCCTCCCTCCCACA GCACCCCCTCTCCCCACCTCACCCGTGTCCCTCCTCCTATTGCTAATACA GCTCCCCCGAACCCCGCTCCGTTCGCGTCTCGTCCCCTCGCTCCAGCTCG TGTCGAAGAACATGCACGACTACAAGATCACGGCGCTGCTGGACCTAGCG AGGCCGTTCCGAGAGGCCGGTCGCACCTTCGGGGAGGCCGTTTTTGCGGC GGGGATAGGGAACAGGGTCCACGACGCCGTGGCCTACAGAGCCGCGGGCA TCCCGAAGGACTTCATCTTCCTCATCGACACCGAGTCTAACCTGCGGGTA AGAGTTTGGTTCGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9912:423..3140-

>mRNA_Ecto-sp9_F_contig9912.17982.1 ID=mRNA_Ecto-sp9_F_contig9912.17982.1|Name=mRNA_Ecto-sp9_F_contig9912.17982.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9912:423..3140- (Ectocarpus species9 EcSCA_722f female)
CTGTACCTCCGAGTACAGGAGGATGGTTTTTGCACGTTTGCCGACGGGCG
GCTGCAGCCGGCGTTGGAGGCCCTGGCGATGCTGGCGAAGGACGACACCC
TCGTGGACGGATTCAACACCGTCCGCTTCGAGATCAGCTGTACCTCCGAG
TACAGGAGGATGGTTTTTGCACGTTTGCCGACGGGCGGCTGCAGCCGGCG
TTGGAGGCCCTGGCGATGCTGGCGAAGGACGACACCCTCGTGGACGGATT
CAACACCGTCCGCTTCGAGATCAGGTACCTGCGGGACTCGAGGGTCCTCG
TGGCCGAGTGCTTCGCCTTCGTGTGGGACGTCAACACTCCCATGATTGTG
GTCGACATCGACGGCACCATCACCAGAAGCGACGTCTCGGGGTTGATGAT
GACGCTCAGCCCGGGCCTAGTTACCGACCACACCCACGAGGGCATCTGCT
CGCTGCTGGCCCGCATGGTGGACGAAGCGGTACCTGCGGGACTCGAGGGT
CCTCGTGGCCGAGTGCTTCGCCTTCGTGTGGGACGTCAACACTCCCATGA
TTGTGGTCGACATCGACGGCACCATCACCAGAAGCGACGTCTCGGGGTTG
ATGATGACGCTCAGCCCGGGCCTAGTTACCGACCACACCCACGAGGGCAT
CTGCTCGCTGCTGGCCCGCATGGTGGACGAAGCGGGGGCACAGGTGGTGT
ACCTTACGTCCCGGCCCATCTCTCTTGCGGCCAAGACCCGCACCTTCCTT
GCCTCGACGGAGCAAGAGGGGAAGAAGCTACCCCTGGGCCCTCTACAGTG
TTGCTTGGAGAAAGTCAGCGGCGTTTTGTGGCGTGAGGGGGCACAGGTGG
TGTACCTTACGTCCCGGCCCATCTCTCTTGCGGCCAAGACCCGCACCTTC
CTTGCCTCGACGGAGCAAGAGGGGAAGAAGCTACCCCTGGGCCCTCTACA
GTGTTGCTTGGAGAAAGTCAGCGGCGTTTTGTGGCGTGAGCTCGTGTCGA
AGAACATGCACGACTACAAGATCACGGCGCTGCTGGACCTAGCGAGGCCG
TTCCGAGAGGCCGGTCGCACCTTCGGGGAGGCCGTTTTTGCGGCGGGGAT
AGGGAACAGGGTCCACGACGCCGTGGCCTACAGAGCCGCGGGCATCCCGA
AGGACTTCATCTTCCTCATCGACACCGAGTCTAACCTGCGGGTAAGAGTT
TGGTTCGTTTGACTCGTGTCGAAGAACATGCACGACTACAAGATCACGGC
GCTGCTGGACCTAGCGAGGCCGTTCCGAGAGGCCGGTCGCACCTTCGGGG
AGGCCGTTTTTGCGGCGGGGATAGGGAACAGGGTCCACGACGCCGTGGCC
TACAGAGCCGCGGGCATCCCGAAGGACTTCATCTTCCTCATCGACACCGA
GTCTAACCTGCGGGTAAGAGTTTGGTTCGTTTGA
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