mRNA_Ecto-sp9_F_contig9912.17982.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R2_9PHAE) HSP 1 Score: 456 bits (1173), Expect = 1.530e-155 Identity = 230/233 (98.71%), Postives = 231/233 (99.14%), Query Frame = 1
Query: 1 LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRD RVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVT+H HEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV
Sbjct: 107 LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHNHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 339
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT7_ECTSI) HSP 1 Score: 405 bits (1041), Expect = 7.700e-138 Identity = 204/207 (98.55%), Postives = 206/207 (99.52%), Query Frame = 1
Query: 79 MLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
MLAKDDTLVDGFNTVRFEIRYLRD RVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVT+HTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGK+LPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV
Sbjct: 1 MLAKDDTLVDGFNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKRLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 207
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R7_9STRA) HSP 1 Score: 165 bits (418), Expect = 4.260e-43 Identity = 103/270 (38.15%), Postives = 141/270 (52.22%), Query Frame = 1
Query: 133 IRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKV------------------------------------------------------------SGVLWRELVSKNMHDYKITAL---------------------LDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
+R+ D RVLVAECFAF +D ++V+DIDGTIT+SDV GL+MT SPG+ TDH GICSLL M +E GA ++YLTSRP+ LA +TR FL Q+G LPLGPL C KV + V++RE+++K+MH++K +AL ++A F AGR + V+AAGIGNR DA AY+AAG+P+DFI +ID+ +N+++
Sbjct: 702 VRFRGDPRVLVAECFAFAFDARDRLLVMDIDGTITKSDVQGLIMTFSPGM-TDHLQPGICSLLHHMSNE-GAHILYLTSRPVVLAKRTRAFLMDLRQDGLLLPLGPLLTCKSKVRSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPSTLTDVVYREVIAKDMHEFKGSALQASLISALSAKNVTSGLQMLHAEVAEVFFRAGRPEDDPVYAAGIGNRETDAFAYQAAGVPEDFICIIDSSANIQI 969
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y642_HETAK) HSP 1 Score: 144 bits (362), Expect = 1.410e-37 Identity = 84/219 (38.36%), Postives = 132/219 (60.27%), Query Frame = 1
Query: 58 PALEALAMLAKDDTLVDGFNTVRFEIRY--LRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRVRVW 708
P E LA+L L+DG N +RFE+ + + R++ AE FVWDV+ +++ DIDGTIT++DV G + T + T+ H+GIC L+ +V++ G ++++TSRP+ L T+TFL++ Q+G +P GPL C + + V+++E+V+K +H YK L + R F +GR E +F G GN+ DA AY + FIF+I +S R+ VW
Sbjct: 100 PTSEQLAVLG----LMDGKNNLRFELTFNDQKGMRLIHAETSCFVWDVDCRIVLCDIDGTITKTDVGGFVGTSTNPEDTNFVHDGICPFLSDLVED-GINIMFVTSRPMMLKQLTKTFLSTICQDGCFIPEGPLFNCPQNLLNVVFQEVVTKTIHRYKTGVLQAVMRLFELSGRENPEDLFRLGFGNKPTDAKAYEQVCVRSQFIFIIGKDS--RIVVW 311
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: LNS2 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF08_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.990e-36 Identity = 106/289 (36.68%), Postives = 141/289 (48.79%), Query Frame = 1
Query: 100 LVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTP-MIVVDIDGTITRSDVSGLMMTLS------PGLVTDHTHEGICSLLARMVDEA--------------------------GAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEK-------------------------------------VSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAG--------------IPKDFIFLIDTESNLRVRVWFV 714
L+ G NT+RFE R D RVLVA+C AF D ++VVDIDGTITRSD GL+MTL PG V DH G+ SLL + E GAQ++YLT+RP+++A +TR FL Q+G LPLGPL L K ++ V++REL++++MH +K L D+A FR AGR VFAAG+GNR+ DA+AY+ AG IP +FI +ID ++ +R W V
Sbjct: 619 LLRGVNTLRFEARVRGDPRVLVADCLAFAMDAAAARVVVVDIDGTITRSDAHGLLMTLRLLMMLRPGTV-DHLQPGVYSLLHHVAAEEKKKRRXXXXXXXXXXXXXXXXXXXXXGAQLLYLTARPLAMAPRTRAFLVGATQDGLVLPLGPLVTNLCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARERGLTDVVYRELIARDMHRFKGQVLQDVAAVFRSAGRHARSRVFAAGVGNRLTDALAYQGAGGTPFRXXXXXXMAGIPDEFICIIDPKTA--IRTWSV 904
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Lipinlike (protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAE7_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.320e-33 Identity = 85/226 (37.61%), Postives = 119/226 (52.65%), Query Frame = 1
Query: 19 EDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
E G C F G L P ++ALA + + D N VRFE + EC +VW +I+VD+DGT+T SDV G + TL G D H G C ++ E +V+YLT+RP+ A+ +R L + Q LP GPL ++G L E+V+KN H +K L ++ AGR +F AG GNR D +AY+ AGI D IFLID+ S+++
Sbjct: 179 ERGRCVFQSGSLTPPIDALANV---ELYEDNANYVRFEHYQRSTCCIRYVECRLYVWHPEESVIIVDLDGTLTVSDVEGHIRTLRLGQY-DFLHRGTCQFFTKL-HELQMRVLYLTARPLDWASASRNHLENAIQLKHVLPPGPLITNSNGLTGALLTEVVNKNPHIFKRQVLQEIQLCLIHAGRVTEHPIFVAGFGNRSSDVLAYKDAGIELDMIFLIDSTSSIK 399
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Phosphatidate (phosphatase LPIN3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6Z4_9STRA) HSP 1 Score: 129 bits (324), Expect = 4.880e-32 Identity = 85/246 (34.55%), Postives = 130/246 (52.85%), Query Frame = 1
Query: 7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVD--GFNTVRFEIRYLRDS--RVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLM---MTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEG-------KKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGE-AVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRV 699
+ + + G F G+L P E L + +L+D G + ++FE RY + R+ E ++WD + ++V DIDGTITRSDV G++ + G H H G+C L ++DE A ++YLT+RP++L TR+++ EQ ++LP GP+ ++ RE+V ++ H +K L L F AGR VF A GN+ DAVAYRA G P IF+I T+S ++V
Sbjct: 75 MEIGDGGKAQFPSGKLAPDPEVLGNVT---SLLDELGPHKLKFEHRYTANGEYRLNYVEALFWLWDSSDSIVVSDIDGTITRSDVGGMINGVLGARMGWKKGHAHPGVCFLYNHLIDETNAHIMYLTARPLNLINDTRSYIYELEQPVSSSSMTMRQLPPGPIITDTTNLTSSFRREVVDRSSHVFKTEMLSQLRDCFTNAGRDIRRYPVFLATFGNKDTDAVAYRAVGAPPVTIFIIGTDSRVQV 317
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Lipin (n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXZ7_9STRA) HSP 1 Score: 131 bits (330), Expect = 6.730e-32 Identity = 86/230 (37.39%), Postives = 118/230 (51.30%), Query Frame = 1
Query: 7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
+ +QE G CTF G + E L D + N VRFE + V + +W N +VVD+DGT+T SDV G + TL G D H G C ++ E G ++VYLT+RP+ A+ +RT L + EQ+ KLP G L ++G L+ E+V+K H +KI L +L AGR VF AG GNR D VAY GI IF++D SN++
Sbjct: 201 MELQERGRCTFITGGIMIPPEDLLFA---DLSEEYPNLVRFEHYQKYTNTVRYVDTKLHLWGPNESAVVVDLDGTLTISDVEGHIRTLRLGQY-DFLHAGACDFFTKL-HELGLRIVYLTARPLDWASASRTHLENAEQQSIKLPPGVLITNSTGLTGALFTEVVNKTPHLFKIQVLNELQLTLIHAGRVTEHPVFVAGFGNRPTDIVAYEEVGIDPSLIFMLDPYSNVK 425
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Protein (involved in plasmid maintenance/nuclear protein involved in lipid metabolism n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5S1_PLAHL) HSP 1 Score: 130 bits (328), Expect = 1.600e-31 Identity = 85/230 (36.96%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
+ +QE G CTF G L E L D + N VRFE + V + +W N ++VVD+DGT+T SDV G + TL G D H G C ++ E G ++VYLT+RP+ A+ +RT L + EQ+ LP G L ++G L+ E+V+K H +KI L +L AGR VF AG GNR D VAY+ G+ IF++D SN++
Sbjct: 225 MELQERGRCTFVTGGLVIPPEDLCFA---DLTENRPNLVRFEHYQKYTNTVRYVDTKLHLWGPNESVVVVDLDGTLTISDVEGHIRTLRLGQY-DFLHAGACDFFTKL-HELGMRIVYLTARPLDWASASRTHLENAEQQSISLPPGVLITNSTGLTGALFTEVVNKTPHLFKIQVLNELQLTLIHAGRVTEHPVFVAGFGNRPTDIVAYQEVGMDPSLIFMLDPYSNVK 449
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2A8_PYTOL) HSP 1 Score: 130 bits (327), Expect = 1.610e-31 Identity = 85/230 (36.96%), Postives = 115/230 (50.00%), Query Frame = 1
Query: 7 LRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDSRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTDHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 696
+++ E G CTF G L P L K D D N VRFE + E +W N ++V D+DGT+T SDV G + TL G D H G C ++ E +++YLT+RP+ A+ +RT L + +Q+ LP G L ++G L E+V+KN H +K L ++ AGR VF AG GNR D VAY GI IFLID SNL+
Sbjct: 192 MQLLERGRCTFVTGGLTPPKTDLL---KVDLFDDRPNLVRFEHFQRSSDTIRYVESRLHLWGPNESVVVADLDGTLTISDVEGHIRTLRLGQY-DFLHHGACDFFNKL-HELDMRIIYLTARPLDWASASRTHLENAKQQTHALPPGVLITNSNGLTGALMTEVVNKNPHVFKAQVLNEIQLTLIHAGRVVEHPVFVAGFGNRPTDVVAYEQVGIDPALIFLIDPYSNLK 416 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9912.17982.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9912.17982.1 >prot_Ecto-sp9_F_contig9912.17982.1 ID=prot_Ecto-sp9_F_contig9912.17982.1|Name=mRNA_Ecto-sp9_F_contig9912.17982.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=239bp LYLRVQEDGFCTFADGRLQPALEALAMLAKDDTLVDGFNTVRFEIRYLRDback to top mRNA from alignment at Ecto-sp9_F_contig9912:423..3140- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9912.17982.1 ID=mRNA_Ecto-sp9_F_contig9912.17982.1|Name=mRNA_Ecto-sp9_F_contig9912.17982.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2718bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9912:423..3140- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9912:423..3140- >mRNA_Ecto-sp9_F_contig9912.17982.1 ID=mRNA_Ecto-sp9_F_contig9912.17982.1|Name=mRNA_Ecto-sp9_F_contig9912.17982.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9912:423..3140- (Ectocarpus species9 EcSCA_722f female)back to top |