mRNA_Ecto-sp9_F_contig984.17923.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig984.17923.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA29_9PHAE) HSP 1 Score: 468 bits (1205), Expect = 8.420e-157 Identity = 355/671 (52.91%), Postives = 371/671 (55.29%), Query Frame = 1
Query: 13 MTSGVKRATRNSGIAVDVNLWDLRDLPKTSTVKRA-------------------PKLKLKDYTVRLPRASRDQDMKLLRRAARDNEGVGESDPVYPLTGPACITRKEAAAALLALGVERDDAMVAA-KAAVSESGDCGAGARSTIAD--RSIPLAMGINQPLLAEAEAGARLASPGANRNLTTEDQQSSLPHPAQLYHAQGKPDPIDDATGAMSAAAKISPARAGDVAG-------------------------------------------------------SXXXXXXXXXXXXXXXXXXXXXGPRFEPKHGVGGSTSSNRYKHVVGDGDVGGDSSMVDRLGKVGCVWGSSTGHHGRGGDGGGKAGAGCYXXXXXXXXXXXXXXXXXXXXSRGYSGGYSGVTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGGHVRYSGALHHKKSRPDEGKGCDGSSSAXXXXXPSRDSCLGKQKRENSNDDGGGGADVISKRAKTGDRYCSYSGSXXXXXXXXXXXXXXXXXVTTSDGKDSXXXXXXGISGXXXXXXXXXXXXXXXXXXXGIAWDN----TGGCDVSLSELSPPSPSRESSSFGKRXXXXXXXXXXXXXXXXMVDGSGCVDVNKASGDDGASERCAKRARQAAGG-QSRQLRGSRDRSGK 1779
M SGVKRATRNSGIAVDVNLWDLRDLPKTSTVK A PKLKLKDYTVRLPRASRDQDMKLLRRAARDNEGVG SDPVYPLTGPACITRKEAAAALLALG ERDD MVA +AA SESGDCGAGA STIAD SIPLAMGI+QPLLAEAEA ARLASPG +RNLTTEDQ+SSLPHPAQL AQGKPD DD TGAMSAAAKI+PARAGDVAG XXXXXXX G RF+P+HGVGGSTSSN+YKHV+GDGDVGGDSSMVDRLGK+ CVWGSSTGHHG+GGDGGGKAG GCYXXXXXXXXXXXXXXXXXXXX RGYSGGYSGVTTS + S +G G G GIAWDN TG C+VS SELSP SP +SSSFGKR MVDGSGCVDVN ASGDDG SERCAKRARQAAGG +S QLRG RDRSGK
Sbjct: 1 MASGVKRATRNSGIAVDVNLWDLRDLPKTSTVKSAATMNNSPDPPSPRSTTHAAPKLKLKDYTVRLPRASRDQDMKLLRRAARDNEGVGGSDPVYPLTGPACITRKEAAAALLALGEERDDEMVAXXRAAASESGDCGAGAGSTIADGESSIPLAMGISQPLLAEAEADARLASPGVSRNLTTEDQRSSLPHPAQLDLAQGKPDSSDDTTGAMSAAAKIAPARAGDVAGLAAAAVAKVLSRGAAEGKPVLKRIFATVVAYDIGNSMEVAGGGGKGCGXXXXXXXXXXXXXXXAFDGVAGGGIGGGQGRRFQPEHGVGGSTSSNKYKHVIGDGDVGGDSSMVDRLGKIACVWGSSTGHHGQGGDGGGKAGPGCYXXXXXXXXXXXXXXXXXXXXXRGYSGGYSGVTTSDD------------------------------------------NDSSXXXDGNGTGG----------------------------------------------------------------------------------------------------------GIAWDNATDNTGECNVSPSELSPLSPFHDSSSFGKRNRGHDDDDNDD-----MVDGSGCVDVNTASGDDGVSERCAKRARQAAGGGKSLQLRGLRDRSGK 518
BLAST of mRNA_Ecto-sp9_F_contig984.17923.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G074_ECTSI) HSP 1 Score: 363 bits (931), Expect = 2.140e-117 Identity = 238/331 (71.90%), Postives = 246/331 (74.32%), Query Frame = 1
Query: 1 GGAAMTSGVKRATRNSGIAVDVNLWDLRDLPKTSTVKRAPKLKLKDYTVRLPRASRDQDMKLLRRAARDNEGVGESDPVYPLTGPACITRKEAAAALLALGVERDDAMVAA-KAAVSESGDCGAGARSTIADRSIPLAMGINQPLLAEAEAGARLASPGANRNLTTEDQQSSLPHPAQLYHAQGKPDPIDDATGAMSAAAKISPARAGDVA--------------------------------------------------GSXXXXXXXXXXXXXXXXXXXXX---GPRFEPKHGVGGSTSSNRYKHVVGDGDVGGDSSMVDRLGKVGCV 831
GG AMTSGVKRATRNSGI +DVNLWDLRDLPKTSTVKRAPKL LKDYTVRLPRASRDQDMKLLRR ARD EGVGESDPVYPLTGPACITRKEAAAALLALG ERDDAMVAA KAAVSESGDCGAGARSTIAD SIPLAMGINQPLLAEAEA ARLASPG +R+LTTEDQ+SSLPHPAQLYHAQGKPD DDATGAMSAAAKI+PARAGDVA GS XXXXXXXXXXXXXXXXXXX GPRFEP+HGVGGSTSSNRY D+ D + GCV
Sbjct: 21 GGEAMTSGVKRATRNSGIGIDVNLWDLRDLPKTSTVKRAPKLNLKDYTVRLPRASRDQDMKLLRRTARDIEGVGESDPVYPLTGPACITRKEAAAALLALGEERDDAMVAAAKAAVSESGDCGAGARSTIADGSIPLAMGINQPLLAEAEADARLASPGVSRSLTTEDQRSSLPHPAQLYHAQGKPDSSDDATGAMSAAAKIAPARAGDVAELAAAAAAKVFSRGAAEGEPVLKRSLATAVANDIANSMEVAGGGGKRCDGGSSSXXXXXXXXXXXXXXXXXXXXXQGPRFEPEHGVGGSTSSNRYNSFGKRKRGHNDNDDDDTVDGSGCV 351
BLAST of mRNA_Ecto-sp9_F_contig984.17923.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE40_ECTSI) HSP 1 Score: 293 bits (750), Expect = 2.160e-91 Identity = 161/176 (91.48%), Postives = 166/176 (94.32%), Query Frame = 1
Query: 109 KRAPKLKLKDYTVRLPRASRDQDMKLLRRAARDNEGVGESDPVYPLTGPACITRKEAAAALLALGVERDDAMVAA-KAAVSESGDCGAGARSTIADRSIPLAMGINQPLLAEAEAGARLASPGANRNLTTEDQQSSLPHPAQLYHAQGKPDPIDDATGAMSAAAKISPARAGDVAG 633
++ PKLKLKDYTVRLPRASRDQDMKLLRRAARD EGVGESDPVYPLTGPACITRKEAAAALLALG ERDDAMVAA KAAVSESGDCG GARSTIAD SIPLAMGINQPLLAEAEA ARLASPG +RNLTTEDQ+SSLPHPAQLYHAQGKPD DDATGAMSAAAKI+PARAGDVAG
Sbjct: 28 RQPPKLKLKDYTVRLPRASRDQDMKLLRRAARDIEGVGESDPVYPLTGPACITRKEAAAALLALGEERDDAMVAAAKAAVSESGDCGEGARSTIADGSIPLAMGINQPLLAEAEADARLASPGVSRNLTTEDQRSSLPHPAQLYHAQGKPDSSDDATGAMSAAAKIAPARAGDVAG 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig984.17923.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig984.17923.1 >prot_Ecto-sp9_F_contig984.17923.1 ID=prot_Ecto-sp9_F_contig984.17923.1|Name=mRNA_Ecto-sp9_F_contig984.17923.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=590bp MTSGVKRATRNSGIAVDVNLWDLRDLPKTSTVKRAPKLKLKDYTVRLPRAback to top mRNA from alignment at Ecto-sp9_F_contig984:566..3146+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig984.17923.1 ID=mRNA_Ecto-sp9_F_contig984.17923.1|Name=mRNA_Ecto-sp9_F_contig984.17923.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2581bp|location=Sequence derived from alignment at Ecto-sp9_F_contig984:566..3146+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig984:566..3146+ >mRNA_Ecto-sp9_F_contig984.17923.1 ID=mRNA_Ecto-sp9_F_contig984.17923.1|Name=mRNA_Ecto-sp9_F_contig984.17923.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3540bp|location=Sequence derived from alignment at Ecto-sp9_F_contig984:566..3146+ (Ectocarpus species9 EcSCA_722f female)back to top |