mRNA_Ecto-sp9_F_contig9827.17912.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9827.17912.1
Unique NamemRNA_Ecto-sp9_F_contig9827.17912.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9827.17912.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLR2_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 1.830e-129
Identity = 218/246 (88.62%), Postives = 221/246 (89.84%), Query Frame = 1 
Query:    1 GSGPLLPEWVSESLCNSCGGILTPGITCRIRVRHRSLASPSVKKAKAKTRVEKTNTKTNKCHNEVVTTCLTCGGINARGGTERQARDKKRRRRGGSRGRKQAVRDSGEGIEALKGKKRNRDAATLRGDYIPLGGGSLATPPTIPSRKRVAQTPSSSKRVGGSKSGNGDGDSGASKGVHHNRRGKSGGSGSGGDAISGYGDADVGGGEEGKGEAGVAPPALSLLERIRRDKKXXXXXXXXSAAATAE 738
            GSGPLLPEWVS+SLCNSCGGILTPGITCRIRVRHRSLASPSVKKAKAKTRVEKTNT  NKC NEVVTTCLTCGGIN RGGTERQARDKKRRRRGGSRGRKQAVRDSGEGIEALKGKKRNRDAATLRGDYIPLGGGSLATPPTIPSRKRVAQTPSS+KRVGGS+SGNGDGDSGASK VHHNRRGKS       DAIS         GEEGKGEAGVAPPALSLLERIRRDK XXXXX   SAAATAE
Sbjct:   83 GSGPLLPEWVSDSLCNSCGGILTPGITCRIRVRHRSLASPSVKKAKAKTRVEKTNT--NKCRNEVVTTCLTCGGINTRGGTERQARDKKRRRRGGSRGRKQAVRDSGEGIEALKGKKRNRDAATLRGDYIPLGGGSLATPPTIPSRKRVAQTPSSNKRVGGSESGNGDGDSGASKSVHHNRRGKSXXXXXXXDAISAS-------GEEGKGEAGVAPPALSLLERIRRDKXXXXXXDAASAAATAE 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9827.17912.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.830e-12988.62protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLR2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9827contigEcto-sp9_F_contig9827:107..1761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNAse P, Rpr2/Rpp21 subunit
Ec32 orthologEc-03_005340.1
Exons3
Model size741
Cds size741
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9827.17912.1prot_Ecto-sp9_F_contig9827.17912.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9827 107..1761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.4339588-CDS-Ecto-sp9_F_contig9827:106..3011622931076.4339588-CDS-Ecto-sp9_F_contig9827:106..301Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9827 107..301 +
1692279021.7961116-CDS-Ecto-sp9_F_contig9827:106..3011692279021.7961116-CDS-Ecto-sp9_F_contig9827:106..301Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9827 107..301 +
1622931076.448407-CDS-Ecto-sp9_F_contig9827:686..8221622931076.448407-CDS-Ecto-sp9_F_contig9827:686..822Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9827 687..822 +
1692279021.8050666-CDS-Ecto-sp9_F_contig9827:686..8221692279021.8050666-CDS-Ecto-sp9_F_contig9827:686..822Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9827 687..822 +
1622931076.4687514-CDS-Ecto-sp9_F_contig9827:1351..17611622931076.4687514-CDS-Ecto-sp9_F_contig9827:1351..1761Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9827 1352..1761 +
1692279021.814267-CDS-Ecto-sp9_F_contig9827:1351..17611692279021.814267-CDS-Ecto-sp9_F_contig9827:1351..1761Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9827 1352..1761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9827.17912.1

>prot_Ecto-sp9_F_contig9827.17912.1 ID=prot_Ecto-sp9_F_contig9827.17912.1|Name=mRNA_Ecto-sp9_F_contig9827.17912.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=247bp
GSGPLLPEWVSESLCNSCGGILTPGITCRIRVRHRSLASPSVKKAKAKTR
VEKTNTKTNKCHNEVVTTCLTCGGINARGGTERQARDKKRRRRGGSRGRK
QAVRDSGEGIEALKGKKRNRDAATLRGDYIPLGGGSLATPPTIPSRKRVA
QTPSSSKRVGGSKSGNGDGDSGASKGVHHNRRGKSGGSGSGGDAISGYGD
ADVGGGEEGKGEAGVAPPALSLLERIRRDKKKKRRHDAASAAATAE*
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mRNA from alignment at Ecto-sp9_F_contig9827:107..1761+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9827.17912.1 ID=mRNA_Ecto-sp9_F_contig9827.17912.1|Name=mRNA_Ecto-sp9_F_contig9827.17912.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1655bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9827:107..1761+ (Ectocarpus species9 EcSCA_722f female)
GGAAGCGGCCCCTTGCTCCCGGAATGGGTGTCAGAATCATTGTGCAACTC
TTGTGGAGGCATATTGACCCCGGGGATAACCTGCCGCATTCGAGTCCGGC
ACCGTTCGTTGGCTTCACCTAGCGTGAAGAAAGCCAAGGCTAAAACCAGG
GTGGAGAAAACCAACACCAAGACCAACAAGTGTCACAACGAAGTGGTAAG
AGGCAGTCATTCCATTCTTGTTCTCTTGTTCTCGCTTGATTGTGTCGGTG
GTGAGCAATATGGATGAGAGTTGGCTTGGTTGTACCGCTGATGTGTTGCA
ACCCGAAACCCGGGCGTGGCTCTAGTGAAACAGGTCACACTCGGCAGAGG
AAGCAAAGAACGGCAGTCTTCGATGATGTGCCACGTGGCGGCTTTGCAGT
TCGCTTTTCCGACAGTTGACTGATATTCGTGTTGGTTTAGTATGCATATG
CTTTCGCAAATAGTTGCGTCTCTTCATGGTGATCTGGCCACAGGTCGTTG
CCCGCCAGCTCATGCTTGGTCGACAGGGGTAGATATCTCGGTGAATGAAC
TCAAACCTGGCGCTGCATGCTTGTATTCAGGTAACAACGTGCTTGACGTG
CGGCGGAATCAACGCTCGAGGAGGAACGGAGCGGCAAGCTCGCGACAAGA
AACGACGCCGGAGGGGAGGCAGCAGGGGCAGGAAACAAGCCGTTAGGGAC
TCTGGGGAGGGAATCGGTGCGTCTGTTGGTGTTGATGTCGTTCTTGTTGA
TTGTACTATGTTTTTTTTCTGGTGCCATGTATTTGGTCCCTGAGTTGCTC
TACTTCGGCCGCTGCTATTGCGGGTGGCCTGTGCCGTCCATTGTGCCTTG
CGCACAGCATTTTCATTTTCCATGCTGACGACCGTGGCACGGGTCGAGCA
GAGCCCCTTTCCAGATGAGATGCTTCCCATTCTCCCGGTAGGGTGCTCAG
TTTCTTTTTCGTATGCCAACATACCGGACAAACTATAGAACGGGCAAGTT
GGGGGTTAGGGTTAGGTTCAGGGTCTGTGTGCCCCCTCCCTTGTTAGGTC
TTTGTTCGCAATAACCTTACTTTTTTTTCGTAGGTAGTCCGATCCTCGCT
TGGGTGTATCCACACCGACACTCACATCTCGATCCACCCCACGCCTCGCA
TCTGACGCTTCGATGGTTTGGTGCTTGCTTTAGACTTTTCGTGCAGACTC
CTAACCTCACCAGCGATTGTTTCCTCCTCAATGCCACTACCACAGAAGCT
CTGAAGGGCAAGAAGAGGAACAGGGATGCTGCCACCCTTCGTGGGGACTA
TATCCCGCTTGGGGGAGGGAGCTTAGCAACACCACCCACAATCCCCTCGC
GGAAAAGAGTTGCCCAAACGCCGTCATCAAGCAAGAGGGTCGGCGGCAGC
AAGAGCGGCAATGGTGACGGTGACAGCGGCGCTAGCAAGGGCGTTCACCA
CAACAGGAGGGGGAAATCTGGTGGCAGTGGCAGCGGCGGTGATGCTATTA
GTGGTTACGGTGATGCGGATGTGGGTGGCGGTGAGGAGGGGAAGGGAGAA
GCAGGAGTCGCGCCCCCAGCGCTGAGCTTGCTCGAGAGAATACGCCGGGA
CAAGAAGAAGAAGCGACGCCATGATGCTGCTTCTGCAGCTGCAACAGCAG
AGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9827:107..1761+

>mRNA_Ecto-sp9_F_contig9827.17912.1 ID=mRNA_Ecto-sp9_F_contig9827.17912.1|Name=mRNA_Ecto-sp9_F_contig9827.17912.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1482bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9827:107..1761+ (Ectocarpus species9 EcSCA_722f female)
GGAAGCGGCCCCTTGCTCCCGGAATGGGTGTCAGAATCATTGTGCAACTC
TTGTGGAGGCATATTGACCCCGGGGATAACCTGCCGCATTCGAGTCCGGC
ACCGTTCGTTGGCTTCACCTAGCGTGAAGAAAGCCAAGGCTAAAACCAGG
GTGGAGAAAACCAACACCAAGACCAACAAGTGTCACAACGAAGTGGGAAG
CGGCCCCTTGCTCCCGGAATGGGTGTCAGAATCATTGTGCAACTCTTGTG
GAGGCATATTGACCCCGGGGATAACCTGCCGCATTCGAGTCCGGCACCGT
TCGTTGGCTTCACCTAGCGTGAAGAAAGCCAAGGCTAAAACCAGGGTGGA
GAAAACCAACACCAAGACCAACAAGTGTCACAACGAAGTGGTAACAACGT
GCTTGACGTGCGGCGGAATCAACGCTCGAGGAGGAACGGAGCGGCAAGCT
CGCGACAAGAAACGACGCCGGAGGGGAGGCAGCAGGGGCAGGAAACAAGC
CGTTAGGGACTCTGGGGAGGGAATCGGTAACAACGTGCTTGACGTGCGGC
GGAATCAACGCTCGAGGAGGAACGGAGCGGCAAGCTCGCGACAAGAAACG
ACGCCGGAGGGGAGGCAGCAGGGGCAGGAAACAAGCCGTTAGGGACTCTG
GGGAGGGAATCGAAGCTCTGAAGGGCAAGAAGAGGAACAGGGATGCTGCC
ACCCTTCGTGGGGACTATATCCCGCTTGGGGGAGGGAGCTTAGCAACACC
ACCCACAATCCCCTCGCGGAAAAGAGTTGCCCAAACGCCGTCATCAAGCA
AGAGGGTCGGCGGCAGCAAGAGCGGCAATGGTGACGGTGACAGCGGCGCT
AGCAAGGGCGTTCACCACAACAGGAGGGGGAAATCTGGTGGCAGTGGCAG
CGGCGGTGATGCTATTAGTGGTTACGGTGATGCGGATGTGGGTGGCGGTG
AGGAGGGGAAGGGAGAAGCAGGAGTCGCGCCCCCAGCGCTGAGCTTGCTC
GAGAGAATACGCCGGGACAAGAAGAAGAAGCGACGCCATGATGCTGCTTC
TGCAGCTGCAACAGCAGAGTGAAAGCTCTGAAGGGCAAGAAGAGGAACAG
GGATGCTGCCACCCTTCGTGGGGACTATATCCCGCTTGGGGGAGGGAGCT
TAGCAACACCACCCACAATCCCCTCGCGGAAAAGAGTTGCCCAAACGCCG
TCATCAAGCAAGAGGGTCGGCGGCAGCAAGAGCGGCAATGGTGACGGTGA
CAGCGGCGCTAGCAAGGGCGTTCACCACAACAGGAGGGGGAAATCTGGTG
GCAGTGGCAGCGGCGGTGATGCTATTAGTGGTTACGGTGATGCGGATGTG
GGTGGCGGTGAGGAGGGGAAGGGAGAAGCAGGAGTCGCGCCCCCAGCGCT
GAGCTTGCTCGAGAGAATACGCCGGGACAAGAAGAAGAAGCGACGCCATG
ATGCTGCTTCTGCAGCTGCAACAGCAGAGTGA
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