mRNA_Ecto-sp9_F_contig979.17879.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig979.17879.1
Unique NamemRNA_Ecto-sp9_F_contig979.17879.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig979.17879.1 vs.
Match: THO (complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 7.840e-73
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:    1 RGLLRLVGRFNKDSVPPVLGFKLAHYRNPSVAKYHRAAVRSAFKNKEIDAARYKVQIDKVTPRSLYVLIAVLLTTGTLNMDELLRHVSPGIATLAAKEKEYLADLETKIAKAGNKVPKLDADGNMDSAAA 390
            RGLLRLVGRFNKDSVPPVLGFKLAHYRNPSVAKYHRAA+RSAFKNKEIDAARYKVQIDKVTPRSLYVLIAVLLTTGTL+MDELLRHVSPGIATLAAKEKEYLADLETKIAKAGNKVPKLDADGNMDSAAA
Sbjct:  319 RGLLRLVGRFNKDSVPPVLGFKLAHYRNPSVAKYHRAAMRSAFKNKEIDAARYKVQIDKVTPRSLYVLIAVLLTTGTLSMDELLRHVSPGIATLAAKEKEYLADLETKIAKAGNKVPKLDADGNMDSAAA 448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig979.17879.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
THO7.840e-7398.46complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig979contigEcto-sp9_F_contig979:25633..27680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.9
Seed ortholog evalue5.2e-63
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categorymitochondrion
Exons4
Model size390
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig979.17879.1prot_Ecto-sp9_F_contig979.17879.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig979 25633..27680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.6990623-CDS-Ecto-sp9_F_contig979:25632..257701622931070.6990623-CDS-Ecto-sp9_F_contig979:25632..25770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 25633..25770 +
1692279019.0773287-CDS-Ecto-sp9_F_contig979:25632..257701692279019.0773287-CDS-Ecto-sp9_F_contig979:25632..25770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 25633..25770 +
1622931070.7167594-CDS-Ecto-sp9_F_contig979:26312..263511622931070.7167594-CDS-Ecto-sp9_F_contig979:26312..26351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 26313..26351 +
1692279019.0932817-CDS-Ecto-sp9_F_contig979:26312..263511692279019.0932817-CDS-Ecto-sp9_F_contig979:26312..26351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 26313..26351 +
1622931070.7332647-CDS-Ecto-sp9_F_contig979:26839..269581622931070.7332647-CDS-Ecto-sp9_F_contig979:26839..26958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 26840..26958 +
1692279019.1056905-CDS-Ecto-sp9_F_contig979:26839..269581692279019.1056905-CDS-Ecto-sp9_F_contig979:26839..26958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 26840..26958 +
1622931070.7473311-CDS-Ecto-sp9_F_contig979:27586..276801622931070.7473311-CDS-Ecto-sp9_F_contig979:27586..27680Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 27587..27680 +
1692279019.1233997-CDS-Ecto-sp9_F_contig979:27586..276801692279019.1233997-CDS-Ecto-sp9_F_contig979:27586..27680Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig979 27587..27680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig979.17879.1

>prot_Ecto-sp9_F_contig979.17879.1 ID=prot_Ecto-sp9_F_contig979.17879.1|Name=mRNA_Ecto-sp9_F_contig979.17879.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=130bp
RGLLRLVGRFNKDSVPPVLGFKLAHYRNPSVAKYHRAAVRSAFKNKEIDA
ARYKVQIDKVTPRSLYVLIAVLLTTGTLNMDELLRHVSPGIATLAAKEKE
YLADLETKIAKAGNKVPKLDADGNMDSAAA
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mRNA from alignment at Ecto-sp9_F_contig979:25633..27680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig979.17879.1 ID=mRNA_Ecto-sp9_F_contig979.17879.1|Name=mRNA_Ecto-sp9_F_contig979.17879.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2048bp|location=Sequence derived from alignment at Ecto-sp9_F_contig979:25633..27680+ (Ectocarpus species9 EcSCA_722f female)
CGCGGTCTGCTGCGGCTGGTGGGGAGGTTCAACAAGGACAGCGTGCCCCC
CGTCCTTGGCTTCAAGCTGGCCCACTACCGGAACCCATCTGTGGCGAAGT
ACCACAGGGCCGCCGTGCGGAGCGCATTCAAGAACAAGGTGATTGGCGTA
CTCGGACCTAGATACGTATGATGCACGGGGCCTCCGGACGTTTGGGTGAG
GCAGAGTCTACGGGGCCCCGTCCCCCTGGTGCGTTTGGTCTCTTGCTCTC
CCGCTGTCTATGTGTCTGTATGTGTGTCTCTGTCTAATCTGTCTATCTGT
CTCTCAGGTCTGTCTCGCTGTCTGTTTCGCTGTCTTGTCTGTCTCTCTAA
CTGTCTCTCTCTGTCACAAGGTGTGTGGCGTTAATGCCAACGTCGACGCC
TTTGGTTGGTGTGTTGTGTTGTTGCTGTCTCTTCTTCCCAAGTCTCCGGG
GCGATAGAAGTATTTTCGTTGCAGTTACATTCTGTTAATTTTGTTCGTGA
TACTAAATATGTCTCTCAACGCTCTTGCTCGCGAAGGCACTACAAACCAA
TGATGCGTCACTATTTCTCAACTTCCCTCTTCAACTGCTTTGTCATTGCT
TGCGTTATTTTGTTGGGTGCTATTCACGTACACGTATAATGCGCATGACT
CAACACTGCTCTGTGTACCTTGCTTCACAGGAGATTGACGCTGCGAGGTA
CAAGGTTCAGATCGACAAGGTATGTGTGTGACAGACAGATGCGGTAGGTG
TCTCGATATAGCCCGTATGTGCCCAATGGCTTGACCGGCACTATGCCGGA
CACCGGAACTATTCACAACAGGGATGTTAGGTATTAGCAAAGGAGCTGCC
CAGAGACTTGATCGGTACTATACCGGGGCACGTACTGCTGTAGAGTACCG
GATACACCTAACCATTCCTTTTCTGTGACGGCGAAACGTTGCGAGTGAGC
AGCGTGGTGGCTTTCCGTAGCGCGTTGGGTAAGGGTTAGGTTTGCTGTCA
TGTAGGGGCGCTTGTTGCTGCTTTGCTGCTGGGATAGGCCGCTCCTGGGC
TCTTTCTCTCCTAACATCGACCATCGCTGGTTTGCTGACCGCTAATTTTG
ATCTGATCGATTTTGGTGCTTTCCGCGAATTCTCCTGCCGCACGCCCTTT
ATTTCCTTTCCCTTGGTCTTTTGTCTTTTTTATGTGTGTTGTGGGGGGTG
TATGTAGGTGACTCCTCGCTCCCTTTACGTGTTAATCGCGGTGCTGCTTA
CGACGGGAACACTGAACATGGACGAGCTTCTTCGCCACGTGTCCCCTGGG
ATCGCCACTCTGGCTGCCAAAGAGAAGTGAGCTTCTATTTGTAGCCCATC
CTGTGCCAATGCTACAGATATTGTACATCACTCGGTATTGTAGGAAATAT
AAGGACCGTTGTGTGGTATTCGCTCTTGTATTTTGTTACTGTAAAGACAG
CAACAATCCGAATGACCCTTATATTTTCGAAAAGACAGAGTAGTATGGTA
GTATTTGCTTGACGTGAATCCAAGCCACATCATACTCTGTTGGGGTGATT
TTGAGTGGGGGGGGCTCTGTATCGCTGGGGGTTGAATACAGGTATGTCGC
GCGGGTGGGATTGCTGGGCACAGACTGAATAATCAAGTCATTATGCGGTT
TGAATATCGCCGGTCGATTCGCCGAGCGTTATTGAAGGGGCCACCTGTTA
GGCCTGTTTTTAATGGACGAACATGGTGTGAGTGGCTGGATAATATTGTC
GGATGGTAGGTTGTGTCCTGGGTAACGTACCAAACCTCCTGGTTGTCAAA
CGCCAACACTTGTTGTTTGGCGCTGTCGTACAATGGTACGGTACAATGGT
ACCACATGCACAGAACATTTGCTCCGTCTCACAATGTCTATTCATGGTAG
CCCCACGTGAATCTGCCTGAAAACGTTTGACGCTTCTGTTGGGCGCCACC
TCAGGGAATACCTGGCGGATCTCGAAACCAAGATTGCGAAGGCAGGAAAC
AAGGTGCCCAAGCTTGACGCAGATGGAAACATGGACTCGGCCGCTGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig979:25633..27680+

>mRNA_Ecto-sp9_F_contig979.17879.1 ID=mRNA_Ecto-sp9_F_contig979.17879.1|Name=mRNA_Ecto-sp9_F_contig979.17879.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig979:25633..27680+ (Ectocarpus species9 EcSCA_722f female)
CGCGGTCTGCTGCGGCTGGTGGGGAGGTTCAACAAGGACAGCGTGCCCCC
CGTCCTTGGCTTCAAGCTGGCCCACTACCGGAACCCATCTGTGGCGAAGT
ACCACAGGGCCGCCGTGCGGAGCGCATTCAAGAACAAGCGCGGTCTGCTG
CGGCTGGTGGGGAGGTTCAACAAGGACAGCGTGCCCCCCGTCCTTGGCTT
CAAGCTGGCCCACTACCGGAACCCATCTGTGGCGAAGTACCACAGGGCCG
CCGTGCGGAGCGCATTCAAGAACAAGGAGATTGACGCTGCGAGGTACAAG
GTTCAGATCGACAAGGAGATTGACGCTGCGAGGTACAAGGTTCAGATCGA
CAAGGTGACTCCTCGCTCCCTTTACGTGTTAATCGCGGTGCTGCTTACGA
CGGGAACACTGAACATGGACGAGCTTCTTCGCCACGTGTCCCCTGGGATC
GCCACTCTGGCTGCCAAAGAGAAGTGACTCCTCGCTCCCTTTACGTGTTA
ATCGCGGTGCTGCTTACGACGGGAACACTGAACATGGACGAGCTTCTTCG
CCACGTGTCCCCTGGGATCGCCACTCTGGCTGCCAAAGAGAAGGAATACC
TGGCGGATCTCGAAACCAAGATTGCGAAGGCAGGAAACAAGGTGCCCAAG
CTTGACGCAGATGGAAACATGGACTCGGCCGCTGCGGGAATACCTGGCGG
ATCTCGAAACCAAGATTGCGAAGGCAGGAAACAAGGTGCCCAAGCTTGAC
GCAGATGGAAACATGGACTCGGCCGCTGCG
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