mRNA_Ecto-sp9_F_contig9789.17875.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9789.17875.1
Unique NamemRNA_Ecto-sp9_F_contig9789.17875.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9789.17875.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU70_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 1.240e-92
Identity = 163/182 (89.56%), Postives = 168/182 (92.31%), Query Frame = 1 
Query:    1 AVGATLAASPVAGRVLTAIRSVPQDVADDAVAVVSRQRAARKR-SGGLAGHHGQVATRGFRAARFSRHKMHRSSSSCSVTITANTRMQRLRSRVRHTQAASWYTLFGRRRRAEDRAEPAHGDDTRRAKQAGALGNGSGDETVTEGNTHDKSPEIAARRSRGGGEVHLNFKEALFAGAVSRSI 543
            AVGATLAASPVAGRVLTAIRS PQDVAD AVAVVS QRAARKR SGGLAGHHGQVATR FRAAR SR KM RSSSS SVTITANTR+QRLRSRVRHTQAASWY +FGRRRRAED  EPAHGDD+RRAKQAGALGN S DETVT+G+THDKSPEIAARRSRGGGEVHLNFKEALFAGAVSRSI
Sbjct:   39 AVGATLAASPVAGRVLTAIRSAPQDVADTAVAVVSWQRAARKRRSGGLAGHHGQVATRSFRAARCSRLKMQRSSSSSSVTITANTRVQRLRSRVRHTQAASWYRIFGRRRRAEDTVEPAHGDDSRRAKQAGALGNDSSDETVTKGDTHDKSPEIAARRSRGGGEVHLNFKEALFAGAVSRSI 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9789.17875.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.240e-9289.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9789contigEcto-sp9_F_contig9789:1267..2760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-16_004290.1
Exons2
Model size545
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931070.0453393-CDS-Ecto-sp9_F_contig9789:1266..17771622931070.0453393-CDS-Ecto-sp9_F_contig9789:1266..1777Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9789 1267..1777 +
1692279018.758228-CDS-Ecto-sp9_F_contig9789:1266..17771692279018.758228-CDS-Ecto-sp9_F_contig9789:1266..1777Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9789 1267..1777 +
1622931070.0563257-CDS-Ecto-sp9_F_contig9789:2727..27591622931070.0563257-CDS-Ecto-sp9_F_contig9789:2727..2759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9789 2728..2759 +
1692279018.7672374-CDS-Ecto-sp9_F_contig9789:2727..27591692279018.7672374-CDS-Ecto-sp9_F_contig9789:2727..2759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9789 2728..2759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9789.17875.1prot_Ecto-sp9_F_contig9789.17875.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9789 1267..2759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9789.17875.1

>prot_Ecto-sp9_F_contig9789.17875.1 ID=prot_Ecto-sp9_F_contig9789.17875.1|Name=mRNA_Ecto-sp9_F_contig9789.17875.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=181bp
AVGATLAASPVAGRVLTAIRSVPQDVADDAVAVVSRQRAARKRSGGLAGH
HGQVATRGFRAARFSRHKMHRSSSSCSVTITANTRMQRLRSRVRHTQAAS
WYTLFGRRRRAEDRAEPAHGDDTRRAKQAGALGNGSGDETVTEGNTHDKS
PEIAARRSRGGGEVHLNFKEALFAGAVSRSI
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mRNA from alignment at Ecto-sp9_F_contig9789:1267..2760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9789.17875.1 ID=mRNA_Ecto-sp9_F_contig9789.17875.1|Name=mRNA_Ecto-sp9_F_contig9789.17875.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9789:1267..2760+ (Ectocarpus species9 EcSCA_722f female)
GCCGTCGGCGCTACACTGGCAGCTTCGCCAGTAGCCGGGAGGGTACTGAC
TGCCATTCGCTCGGTACCGCAGGATGTTGCTGATGACGCTGTAGCGGTAG
TGTCGCGGCAACGCGCTGCGCGCAAGAGAAGTGGAGGGCTAGCTGGACAC
CACGGGCAAGTCGCAACGCGAGGTTTTCGCGCCGCCCGCTTCAGCAGGCA
TAAAATGCACCGCAGCAGCAGTTCGTGCTCCGTTACGATCACCGCAAACA
CCAGGATGCAACGGCTGCGTTCGCGTGTGCGCCACACGCAAGCAGCTTCA
TGGTACACACTGTTCGGTAGACGAAGACGTGCGGAGGATAGGGCGGAGCC
TGCCCACGGCGATGACACCCGCCGAGCAAAGCAAGCCGGAGCTCTCGGCA
ACGGCAGCGGCGACGAGACGGTGACAGAGGGCAACACACACGACAAATCT
CCGGAGATCGCTGCACGAAGATCCAGGGGCGGGGGAGAGGTCCACCTTAA
TTTCAAAGAGGGTATGTAGCGCTGCTGTACCCATCGATTGCCAAACGGTT
GGCCAGTTCTGCTGCTGTTAGCGATTGTGACCAGCACAAACCATTTTTTC
TTTCTGTCGTTGGTTTTTGTATCGGGAAAAGCAAGCTGCATCTTGTATCA
CAACGTATGCATACGTACGCATATCATGTCCAATATGCGCACCGCAAGTG
CGGTAGACTTTCTTGCGTAGTGATACAGCAGTACAAGTAGTCTACGGTGG
CGGTAGACTACACCGTCTCATCAAGGACCCTATTGCGAACAGACGTATCT
GTGAGTTCAAAGTACAACACGCAAAACAGATCTACCTGTGAGTTCTAAAG
TACCACACGCAAAACACAGCAGTGTGGCGTGTGCCGCCCAAGTGTTGACA
CGTGGCCACCCACCGATTGTTCAATGCACGTGACACATGGCATCAAACAG
CGGAGACACTTTGATTTCGGGGCGAGCGTGAGGGGGGAAAGGGAGAGAGT
TTCCCCGGATTTTTCTGCGACAAGTATGCATAAAATAACTTACAGTCGCA
AGGCGCGGGGACATCTCCGAAGACATTTTTGAAAAATTTGATATTCGCAA
CCAATCACACAAGTCTATGTGTATCACATAGCCTATGTGTATGGTACATA
CATTGCTACTGGTATGTAGGTGAGGGTATCTCGTAGATTCTGTGGAGAGT
GTCGAAGCGCTGAGGCCAAAAGGCTTTGACAGCAGTTGTCAGTTTTTCGC
ACGTGGAGTAATTGTGTAGAGCACGGAGACGGTGTGTTGGAACGAGCGCA
GGAATAAAAAGACACGAACCAAATGTTGAAAATGTCAGAATTATAAATCG
ACCACACACGGGCGGGTACTTAGTCTAACCACGCGCGCACATGCGGTAGT
CGCTTTCCTGCACGCACGCCCCCCACCCTATTCTGTTCTCGCGTCCTTAC
TACTGTAACAGCTCTTTTCGCAGGAGCCGTCAGTAGAAGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9789:1267..2760+

>mRNA_Ecto-sp9_F_contig9789.17875.1 ID=mRNA_Ecto-sp9_F_contig9789.17875.1|Name=mRNA_Ecto-sp9_F_contig9789.17875.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9789:1267..2760+ (Ectocarpus species9 EcSCA_722f female)
GCCGTCGGCGCTACACTGGCAGCTTCGCCAGTAGCCGGGAGGGTACTGAC
TGCCATTCGCTCGGTACCGCAGGATGTTGCTGATGACGCTGTAGCGGTAG
TGTCGCGGCAACGCGCTGCGCGCAAGAGAAGTGGAGGGCTAGCTGGACAC
CACGGGCAAGTCGCAACGCGAGGTTTTCGCGCCGCCCGCTTCAGCAGGCA
TAAAATGCACCGCAGCAGCAGTTCGTGCTCCGTTACGATCACCGCAAACA
CCAGGATGCAACGGCTGCGTTCGCGTGTGCGCCACACGCAAGCAGCTTCA
TGGTACACACTGTTCGGTAGACGAAGACGTGCGGAGGATAGGGCGGAGCC
TGCCCACGGCGATGACACCCGCCGAGCAAAGCAAGCCGGAGCTCTCGGCA
ACGGCAGCGGCGACGAGACGGTGACAGAGGGCAACACACACGACAAATCT
CCGGAGATCGCTGCACGAAGATCCAGGGGCGGGGGAGAGGTCCACCTTAA
TTTCAAAGAGGGCCGTCGGCGCTACACTGGCAGCTTCGCCAGTAGCCGGG
AGGGTACTGACTGCCATTCGCTCGGTACCGCAGGATGTTGCTGATGACGC
TGTAGCGGTAGTGTCGCGGCAACGCGCTGCGCGCAAGAGAAGTGGAGGGC
TAGCTGGACACCACGGGCAAGTCGCAACGCGAGGTTTTCGCGCCGCCCGC
TTCAGCAGGCATAAAATGCACCGCAGCAGCAGTTCGTGCTCCGTTACGAT
CACCGCAAACACCAGGATGCAACGGCTGCGTTCGCGTGTGCGCCACACGC
AAGCAGCTTCATGGTACACACTGTTCGGTAGACGAAGACGTGCGGAGGAT
AGGGCGGAGCCTGCCCACGGCGATGACACCCGCCGAGCAAAGCAAGCCGG
AGCTCTCGGCAACGGCAGCGGCGACGAGACGGTGACAGAGGGCAACACAC
ACGACAAATCTCCGGAGATCGCTGCACGAAGATCCAGGGGCGGGGGAGAG
GTCCACCTTAATTTCAAAGAGGCTCTTTTCGCAGGAGCCGTCAGTAGAAG
CATACTCTTTTCGCAGGAGCCGTCAGTAGAAGCATA
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