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Homology
BLAST of mRNA_Ecto-sp9_F_contig9774.17867.1 vs.
Match: GLOBIN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE) HSP 1 Score: 496 bits (1277), Expect = 1.220e-160 Identity = 285/316 (90.19%), Postives = 292/316 (92.41%), Query Frame = 1
Query: 1 LSQLSLCGRDTLKWANIAIKVSLESHNLLQDAWPDEIVGQVPSAQVETIMGEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEPEEGXXXXXXXXXXXXXXXXESDGSSISAPFQIPFLVSLSISLVQRVLRMGEQAWANLEEERAGVKRDDPSPTRRRASXXXXXXXXXXXXNINTAAAGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVIIRYIRPETAAEGLGVPILPLLFNEALLALGNRVNLHALNTETDVAPRSR 948
L +LSLCGRDTL WANIAIKVSLESHNLLQDAWPDEIVGQ+PSAQVETIMGEHPLLPPIQDTFNKGDVEA+VLSIGRRFPALCKLLATLVTASPPKSQEPEEGXXXXXXXXXXXXXX E DGSS SAPFQ PFLVSLSISLVQRVLRMGEQAWA LEEERAGVKRDDP PTRRRAS + NTAA GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVI+RYI+PETAAEGLGVPILPLLFNEALLALGNRVNLHALNT+T VAPRSR
Sbjct: 1044 LGKLSLCGRDTLTWANIAIKVSLESHNLLQDAWPDEIVGQIPSAQVETIMGEHPLLPPIQDTFNKGDVEAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEGXXXXXXXXXXXXXXK-EIDGSSDSAPFQTPFLVSLSISLVQRVLRMGEQAWAKLEEERAGVKRDDPGPTRRRASAKTAQESTT---HTNTAA-GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVIVRYIKPETAAEGLGVPILPLLFNEALLALGNRVNLHALNTKTVVAPRSR 1354
BLAST of mRNA_Ecto-sp9_F_contig9774.17867.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK6_ECTSI) HSP 1 Score: 444 bits (1142), Expect = 3.610e-149 Identity = 250/319 (78.37%), Postives = 256/319 (80.25%), Query Frame = 1
Query: 1 LSQLSLCGRDTLKWANIAIKVSLESHNLLQDAWPDEIVGQVPSAQVETIMGEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEPEEGXXXXXXXXXXXXXXXXESDGSSISAPFQIPFLVSLSISLVQRVLRMGEQAWANLEEERAGVKRDDPSPTRRRASXXXXXXXXXXXXNINTAAA-GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVIIRYIRPETAAEGLGVPILPLLFNEALLALGNRVNLHALNT--ETDVAPRSR 948
L +LSLCGRDTLKWANIAIKVSLESHNLLQDAWPDEIVGQVPSAQVETIMGEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEPE RVLRMGEQAWA LEEERAGVKRDDPSPTRRRAS + NT+ A GTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYR+MAVIIRYIRP+TAAEGLGVPILPLLFNEALLALGNRVNLHALNT +TDV PRSR
Sbjct: 211 LGKLSLCGRDTLKWANIAIKVSLESHNLLQDAWPDEIVGQVPSAQVETIMGEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEPE-------------------------------------------RVLRMGEQAWAKLEEERAGVKRDDPSPTRRRASATTAQESAT---STNTSTADGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRAMAVIIRYIRPDTAAEGLGVPILPLLFNEALLALGNRVNLHALNTTTKTDVGPRSR 483
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Armadillo-type fold |
| Ec32 ortholog | Ec-24_004200.1 |
| Exons | 5 |
| Model size | 951 |
| Cds size | 951 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931069.3037982-CDS-Ecto-sp9_F_contig9774:523..643 | 1622931069.3037982-CDS-Ecto-sp9_F_contig9774:523..643 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 524..643 + |
| 1692279018.3560572-CDS-Ecto-sp9_F_contig9774:523..643 | 1692279018.3560572-CDS-Ecto-sp9_F_contig9774:523..643 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 524..643 + |
| 1622931069.32017-CDS-Ecto-sp9_F_contig9774:1310..1493 | 1622931069.32017-CDS-Ecto-sp9_F_contig9774:1310..1493 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 1311..1493 + |
| 1692279018.372216-CDS-Ecto-sp9_F_contig9774:1310..1493 | 1692279018.372216-CDS-Ecto-sp9_F_contig9774:1310..1493 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 1311..1493 + |
| 1622931069.33466-CDS-Ecto-sp9_F_contig9774:2627..2780 | 1622931069.33466-CDS-Ecto-sp9_F_contig9774:2627..2780 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 2628..2780 + |
| 1692279018.3833125-CDS-Ecto-sp9_F_contig9774:2627..2780 | 1692279018.3833125-CDS-Ecto-sp9_F_contig9774:2627..2780 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 2628..2780 + |
| 1622931069.3486726-CDS-Ecto-sp9_F_contig9774:3557..3848 | 1622931069.3486726-CDS-Ecto-sp9_F_contig9774:3557..3848 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 3558..3848 + |
| 1692279018.3992057-CDS-Ecto-sp9_F_contig9774:3557..3848 | 1692279018.3992057-CDS-Ecto-sp9_F_contig9774:3557..3848 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 3558..3848 + |
| 1622931069.362457-CDS-Ecto-sp9_F_contig9774:4509..4713 | 1622931069.362457-CDS-Ecto-sp9_F_contig9774:4509..4713 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 4510..4713 + |
| 1692279018.4099553-CDS-Ecto-sp9_F_contig9774:4509..4713 | 1692279018.4099553-CDS-Ecto-sp9_F_contig9774:4509..4713 | Ectocarpus species9 EcSCA_722f female | CDS | Ecto-sp9_F_contig9774 4510..4713 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9774.17867.1 >prot_Ecto-sp9_F_contig9774.17867.1 ID=prot_Ecto-sp9_F_contig9774.17867.1|Name=mRNA_Ecto-sp9_F_contig9774.17867.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=317bp
LSQLSLCGRDTLKWANIAIKVSLESHNLLQDAWPDEIVGQVPSAQVETIM GEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEP EEGDGQQQQQQEEEKGKGKESDGSSISAPFQIPFLVSLSISLVQRVLRMG EQAWANLEEERAGVKRDDPSPTRRRASAKTAQESTTTTTNINTAAAGTLS PELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQT PVQGGVRFAAYRSMAVIIRYIRPETAAEGLGVPILPLLFNEALLALGNRV NLHALNTETDVAPRSR* back to topmRNA from alignment at Ecto-sp9_F_contig9774:524..4713+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp9_F_contig9774.17867.1 ID=mRNA_Ecto-sp9_F_contig9774.17867.1|Name=mRNA_Ecto-sp9_F_contig9774.17867.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4190bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9774:524..4713+ (Ectocarpus species9 EcSCA_722f female) TTGTCGCAGCTCTCGCTGTGTGGCAGGGACACCTTGAAGTGGGCCAACAT
CGCCATCAAGGTTTCGCTCGAGTCGCACAACCTCTTGCAGGACGCGTGGC
CGGACGAGATAGTCGGGCAGGTAGGCATCTAACTTTTCGTTCTTTTGTTT
CGTTTCCGCATTTTTTTTTTTGTTTCCCTGCTAACGGTCGATTACTCTGC
AGCTATCACGTTAGCCGAGAACGGCGGCGTTGGAGCCGTCTCGTCGAGAT
CTTTCCGGAAAACACATCGGTTCGTTTATGCGCTATGGATGCACATCTGC
ATATGTAGACTACCGTGTTCATAGGTTGCATACGATACGACATCCCGCCG
TGGCTGACATAAAAGATATCATACGCCCTGGACCAGTTTTCAAAGCTCGA
TTACTCCACAGCAGAAAGAACTGCGGCGCCGAAAATGGCGGCGTTGGAGC
CGTCTTGTCGAGAGATAGCGTTCCGAAAACGCATCGTTTCATTACGCCTC
CTCTTCGCCGTGGAGTAGACGTGCTTTTTGGAAGATCGGCCCAAGGGATG
TGGTATCTTGCGTCACCCCCGGCGGCAATCGAGCTTTGAAAATCGGTTCA
GCGGGTGCGATATCTCGTGTCATCTACGGCGTTCGTCGAGCTTTGAACAC
CAATCCCGGGGTATGTGTGATATCTCGTGTCACCTACTTGTATTGCGGCA
GACATCGTTCTTGTCGATGACTTAGTCGACTCACGCGAGGGAGACAACAC
CCCCCCCCTCCCCCCCCCCCTGCTTGCGCTTGCGCAGGTGCCGTCGGCCC
AGGTGGAGACCATCATGGGCGAGCACCCGCTGCTACCCCCCATCCAGGAC
ACGTTCAACAAGGGCGATGTGGAGGCTTACGTGCTGTCGATCGGAAGGCG
TTTCCCGGCATTGTGCAAGCTGCTCGCCACGCTCGTTACGGCCTCGCCGC
CAAAGTCGCAGGAGCCTGAGGTGCGAGGTTGACTTTGTCCTCCAGAACAC
AACATATGAAGTGAAGTATAAGTTGTCCTCCAAAACAACCCAAGAATATG
TTATTAATATGAATTGAGGTATTACATTACATTATGGTTTTGGGTCTAGA
GCGCTGCAGTCGGTGGAGAGTTACGAACTCTCTACTCTTGCGACGAGCAA
GTTGTCTCTACTCTAGCAACAGCAAGTTGTCCTCGCGTAGAGCAACGACA
AAGGAAGTGGCGGCACGTGTAGAACCACGTGGACAGTATGACAGGTCTGG
TGGAACCAGAGAGAGGTAGTGAAAGGGGGTGAGCTGGGAGGGGCAAGAGC
GGACAGCCATCAGGCATCAAGGTCATTAACGGAAGTTACTCCTCACTCGT
GACAGAGAAGACATAGATGAGTCGAGTCGGAGGGATTCTCCGACTGGTGT
TGGACGTTACAGACAGACATGGAAGGAGGCGTGTTGGTTCAGGAGAAACA
AGTCCCACATCTTACATGCGTAACAACTATTGCATTTTTCTGTTTGGAGT
TTGTTGGACTCGGGTATGTTGAATTATTATGTTTTTTTTCATGATTCGCG
CCATTTACGAGCCCTTTCTAGCTTCCTCTGTGTCGTTCAAGCTAACGCCA
GCTTGCGCCATGAGGTCTTTGTATGTCGCCTGTGTATGTATGTTCCATGT
TCCGTGTGGCTTGCTTCGATTGCAGGCACTAGCCCGTTTGGCGTGTCAAA
GCCCATGGTTGAGGTCGTGGGTTTGCCTCGGGGATGTTCAAGGTGTCGTT
GTTGTTATGGTTGGAACCAGTACCACCCTCTATTTTGCTTCCGCCGTGTT
CGACAGCAGATGTTGCATGCCAGCTTCCGCGGTTGAAGGCTTGTCGTCTG
TTGCCTACGTACGTTGTTTTCGGCCAATCGTTTGTTGTGCCTTTACCCAC
AACTAGTAGCCAGAGTTGCTTGCCACAGCCCATGATTAGGCTGTGTGTGT
TGTCTCTCCTTTCGCCCGATGCATAGTAGTATCGACCGCTAGAACGTGAG
CCTTGCCAGCGACTCGCCCGCCGCTGGGTGGTGTTGACGCGGACTTGCGT
CTAATTTTTTTTTGAAAATCGTACTCGCTCTTGTTCGTCACGCGGTCCAC
TTAGGAGGGAGACGGGCAACAACAGCAGCAACAGGAGGAGGAGAAGGGAA
AGGGAAAGGAAAGCGACGGCAGCAGCATTTCCGCGCCGTTCCAAATACCG
TTCCTTGTCTCCCTCTCGATATCGCTCGTGCAGAGGGTCCTGAGAATGGG
CGAACAGGTGTGTGCGGCCTTGCGGTTTTTTCCGCGTGTGCTTGTTTTGT
GACCATGGACAGCGCCGAGCGACTGGCCAATGAAATACCGCCAGTCTTAC
CACGGGAGGGTATACCATAACGCTGTCTATTTCGCGGGGTCTCCTGGCAA
GCGGTCCTGAGGCGGCCGAGGTGGAAAGAGTTTTGAACAAAGGAGTCTCT
TTTATATGTGTGTACAATGCGTGTTGTGAATCCGTGAGTTCCAACCTTCC
TCGCCTGCCTGTTTGTTGGGTTCGTGTGTCTTGGATTAGCATCAGCCGCG
GTACTGCTGTACCCAGCTGACCAATGGAAATACGCCAGTGTGCATGTTTT
TTGTTTGAATAGCATCGACCGCGCTACACGTCTGACCAATGAAAAGACGC
CAGTCTCAACGCGACTGAAAACACAAAATTATTTTTTTGGCCATGACCTG
GGACCCCACGAGAGGGGGGTCATGGGAGAGGCTGAGCTAAATTTACCCTC
CGGATTTACGGACAGACACGGCAACAGCGTGTGTGTGTTTACATGTTTTT
CTCAGTCCAGCACAACGAATCCATCTCTTCCTTCAGACGAAAGTCCAGGA
TGCATGTTAACTATTATAGCAATGAATCAATCAGTGTTTTTTTTTTCTGC
TTAATATAGCCGTCTCTATTGCTTAACATATCTGTCTCTAATCCAAAGAT
AACGGGTCTAGGATATTTTGTGAGTGTGTTGTTTTTGTTCATATATTATT
CGTGTTTTCGTTTCGACACACACCCACTTGCCAGGCCTGGGCCAACCTCG
AGGAAGAACGCGCGGGCGTGAAGCGAGACGACCCCAGCCCGACTCGCAGA
AGAGCCTCAGCGAAGACCGCCCAGGAGTCAACCACCACCACCACCAACAT
CAACACCGCCGCCGCCGGCACCCTCTCCCCCGAGCTAGCCGCTAGGGTGT
CCGGCCTCCTGTTGCCCTCCGCGGTGACCCTGCTGGAGGCCCTGGTTGCT
AGCTCTAGGCTCGAGAAGGCGATGGAGGACCGGCAGGGGACGGTGTGCCA
GTGCATGGGCCAGGCGGTCGCCCAGGTAGGGACGGTCTGTGGGCGGTGGT
GGTGGTGGTGGTTGCGTGTAAGGGAGGGCTTGTCACGTTGTGTGGGCTGG
TTGGGTGTGCTGTGTAGCGTGTCAGGGGGCTGGAGGGCTTGTCGCGCGGC
GTTTTTTGGTGTGATGGGTGCGTGTGCAAGCGTGTACGGAGGTTGGAGGG
CTTGCCACGAGGCGTGTTTTGTGTTGGTTCGGTGTGCAAGCGTGTACCGA
GCTGCGAGTGCCTGTCGTGCACGGCTCACGATATTGTAGCTGGTTGCTTC
AAGGGGCTTCTTCTGTGGATGCTGTACCCACAATGGTACGGCGTTCGTCC
AGTCGGAGAGCGCGCACGTGTGCTGCGACGCCCGAGTCGTTTGCAGACTC
GCGGCCGCGCTTGAAGTCCGTTACGGGCACCGATGCGTTTTCGCTACAGC
GGTGGGTTTGTACGTAAATGCCCTGATCCTTGCGCGCTATTTTTCGAAGA
GTCGCGAGAATTACCCCCCACTACTTGCCCACCTTTGACAGAAGTAAGAA
GGAACGTTTGGCCATCGGTGTTCGGTCCTGTGGGAACAATGCTCCGTCCT
CTGGACGCGTGGTCAATGGTCTAACAGCTGAGGCATTCCAAGCATGAGTA
ACCCCCTTCTCCCCCCCTACTTGCGGTGCGGTACAGACGCCCGTTCAAGG
AGGAGTGAGGTTTGCGGCTTACCGCTCCATGGCGGTGATCATCCGGTACA
TCAGGCCTGAGACAGCGGCAGAGGGTCTGGGAGTGCCGATACTCCCTCTG
CTGTTCAACGAGGCGCTCCTCGCTCTCGGCAACCGCGTCAACCTCCACGC
CCTCAATACTGAGACGGACGTCGCGCCGCGAAGCAGGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp9_F_contig9774:524..4713+ >mRNA_Ecto-sp9_F_contig9774.17867.1 ID=mRNA_Ecto-sp9_F_contig9774.17867.1|Name=mRNA_Ecto-sp9_F_contig9774.17867.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1902bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9774:524..4713+ (Ectocarpus species9 EcSCA_722f female) TTGTCGCAGCTCTCGCTGTGTGGCAGGGACACCTTGAAGTGGGCCAACAT CGCCATCAAGGTTTCGCTCGAGTCGCACAACCTCTTGCAGGACGCGTGGC CGGACGAGATAGTCGGGCAGTTGTCGCAGCTCTCGCTGTGTGGCAGGGAC ACCTTGAAGTGGGCCAACATCGCCATCAAGGTTTCGCTCGAGTCGCACAA CCTCTTGCAGGACGCGTGGCCGGACGAGATAGTCGGGCAGGTGCCGTCGG CCCAGGTGGAGACCATCATGGGCGAGCACCCGCTGCTACCCCCCATCCAG GACACGTTCAACAAGGGCGATGTGGAGGCTTACGTGCTGTCGATCGGAAG GCGTTTCCCGGCATTGTGCAAGCTGCTCGCCACGCTCGTTACGGCCTCGC CGCCAAAGTCGCAGGAGCCTGAGGTGCCGTCGGCCCAGGTGGAGACCATC ATGGGCGAGCACCCGCTGCTACCCCCCATCCAGGACACGTTCAACAAGGG CGATGTGGAGGCTTACGTGCTGTCGATCGGAAGGCGTTTCCCGGCATTGT GCAAGCTGCTCGCCACGCTCGTTACGGCCTCGCCGCCAAAGTCGCAGGAG CCTGAGGAGGGAGACGGGCAACAACAGCAGCAACAGGAGGAGGAGAAGGG AAAGGGAAAGGAAAGCGACGGCAGCAGCATTTCCGCGCCGTTCCAAATAC CGTTCCTTGTCTCCCTCTCGATATCGCTCGTGCAGAGGGTCCTGAGAATG GGCGAACAGGAGGGAGACGGGCAACAACAGCAGCAACAGGAGGAGGAGAA GGGAAAGGGAAAGGAAAGCGACGGCAGCAGCATTTCCGCGCCGTTCCAAA TACCGTTCCTTGTCTCCCTCTCGATATCGCTCGTGCAGAGGGTCCTGAGA ATGGGCGAACAGGCCTGGGCCAACCTCGAGGAAGAACGCGCGGGCGTGAA GCGAGACGACCCCAGCCCGACTCGCAGAAGAGCCTCAGCGAAGACCGCCC AGGAGTCAACCACCACCACCACCAACATCAACACCGCCGCCGCCGGCACC CTCTCCCCCGAGCTAGCCGCTAGGGTGTCCGGCCTCCTGTTGCCCTCCGC GGTGACCCTGCTGGAGGCCCTGGTTGCTAGCTCTAGGCTCGAGAAGGCGA TGGAGGACCGGCAGGGGACGGTGTGCCAGTGCATGGGCCAGGCGGTCGCC CAGGCCTGGGCCAACCTCGAGGAAGAACGCGCGGGCGTGAAGCGAGACGA CCCCAGCCCGACTCGCAGAAGAGCCTCAGCGAAGACCGCCCAGGAGTCAA CCACCACCACCACCAACATCAACACCGCCGCCGCCGGCACCCTCTCCCCC GAGCTAGCCGCTAGGGTGTCCGGCCTCCTGTTGCCCTCCGCGGTGACCCT GCTGGAGGCCCTGGTTGCTAGCTCTAGGCTCGAGAAGGCGATGGAGGACC GGCAGGGGACGGTGTGCCAGTGCATGGGCCAGGCGGTCGCCCAGACGCCC GTTCAAGGAGGAGTGAGGTTTGCGGCTTACCGCTCCATGGCGGTGATCAT CCGGTACATCAGGCCTGAGACAGCGGCAGAGGGTCTGGGAGTGCCGATAC TCCCTCTGCTGTTCAACGAGGCGCTCCTCGCTCTCGGCAACCGCGTCAAC CTCCACGCCCTCAATACTGAGACGGACGTCGCGCCGCGAAGCAGGTGAAC GCCCGTTCAAGGAGGAGTGAGGTTTGCGGCTTACCGCTCCATGGCGGTGA TCATCCGGTACATCAGGCCTGAGACAGCGGCAGAGGGTCTGGGAGTGCCG ATACTCCCTCTGCTGTTCAACGAGGCGCTCCTCGCTCTCGGCAACCGCGT CAACCTCCACGCCCTCAATACTGAGACGGACGTCGCGCCGCGAAGCAGGT GA back to top
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