mRNA_Ecto-sp9_F_contig9760.17860.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9760.17860.1
Unique NamemRNA_Ecto-sp9_F_contig9760.17860.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9760.17860.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9760contigEcto-sp9_F_contig9760:4254..4496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931067.9785287-CDS-Ecto-sp9_F_contig9760:4253..44961622931067.9785287-CDS-Ecto-sp9_F_contig9760:4253..4496Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9760 4254..4496 +
1692279017.6347787-CDS-Ecto-sp9_F_contig9760:4253..44961692279017.6347787-CDS-Ecto-sp9_F_contig9760:4253..4496Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9760 4254..4496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9760.17860.1prot_Ecto-sp9_F_contig9760.17860.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9760 4254..4496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9760.17860.1

>prot_Ecto-sp9_F_contig9760.17860.1 ID=prot_Ecto-sp9_F_contig9760.17860.1|Name=mRNA_Ecto-sp9_F_contig9760.17860.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=81bp
MRLPQVLHATGSSRIGIATIVRCLACEKTAAEARVAVVWGNIKCQRDGKL
SWTTTQQSMPSRALSRVRIAWRAPPVLADT*
back to top

mRNA from alignment at Ecto-sp9_F_contig9760:4254..4496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9760.17860.1 ID=mRNA_Ecto-sp9_F_contig9760.17860.1|Name=mRNA_Ecto-sp9_F_contig9760.17860.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9760:4254..4496+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGCTGCCACAGGTGCTGCATGCTACCGGTTCAAGCCGTATAGGCAT
TGCCACCATTGTCAGGTGTCTCGCATGCGAAAAAACGGCGGCGGAGGCGC
GTGTAGCCGTTGTATGGGGGAACATCAAGTGTCAAAGAGACGGCAAGCTG
TCATGGACCACAACTCAACAAAGCATGCCTTCCAGAGCACTGTCGAGGGT
GCGGATTGCATGGCGAGCACCGCCTGTTCTAGCCGATACGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9760:4254..4496+

>mRNA_Ecto-sp9_F_contig9760.17860.1 ID=mRNA_Ecto-sp9_F_contig9760.17860.1|Name=mRNA_Ecto-sp9_F_contig9760.17860.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9760:4254..4496+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGCTGCCACAGGTGCTGCATGCTACCGGTTCAAGCCGTATAGGCAT
TGCCACCATTGTCAGGTGTCTCGCATGCGAAAAAACGGCGGCGGAGGCGC
GTGTAGCCGTTGTATGGGGGAACATCAAGTGTCAAAGAGACGGCAAGCTG
TCATGGACCACAACTCAACAAAGCATGCCTTCCAGAGCACTGTCGAGGGT
GCGGATTGCATGGCGAGCACCGCCTGTTCTAGCCGATACGTAGATGCGGC
TGCCACAGGTGCTGCATGCTACCGGTTCAAGCCGTATAGGCATTGCCACC
ATTGTCAGGTGTCTCGCATGCGAAAAAACGGCGGCGGAGGCGCGTGTAGC
CGTTGTATGGGGGAACATCAAGTGTCAAAGAGACGGCAAGCTGTCATGGA
CCACAACTCAACAAAGCATGCCTTCCAGAGCACTGTCGAGGGTGCGGATT
GCATGGCGAGCACCGCCTGTTCTAGCCGATACGTAG
back to top