mRNA_Ecto-sp9_F_contig9759.17857.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU5_9PHAE) HSP 1 Score: 304 bits (779), Expect = 1.720e-91 Identity = 179/231 (77.49%), Postives = 200/231 (86.58%), Query Frame = 1
Query: 124 MSAAAPGPALAVTKPGKCERIVFIGTTRHVVEHKWRFDAARNKMRIDTRLVNKKSPNRAANKETRYVQNTEEAVSSEAVEMVNRVLKNKRDMFLRAHGGEAGXXXXXXXXXXRNVDGELADPVITALRSGGRARSGVETGKPDEQEAEEVDWRTQDAKTFLASLNSKESSHDALEFLASKGLEAAKEILRRNRELEVMARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA 816
MS AAPGPA AVTKPGKC+RIVFIG+TR++VEHKWRFDAARNK+R++T+ VNKKSPNR ++KETRYV+NTEEA SSEA+EM +RVLK KRD+FLR +GG XXXXXXXXXX D ELADPVI ALR GGR RSGVETGKPDEQE DA++FLA LNSKESS DALEFLASKGL+AAKE+ RR REL+V+ARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA
Sbjct: 1 MSTAAPGPAPAVTKPGKCQRIVFIGSTRYLVEHKWRFDAARNKVRLETKFVNKKSPNRPSDKETRYVENTEEAASSEALEMADRVLKKKRDVFLRENGGXXXXXXXXXXXXXX-XDDELADPVIVALRGGGRTRSGVETGKPDEQE---------DAESFLAFLNSKESSSDALEFLASKGLDAAKEVRRRIRELDVLARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA 221
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM14_9PHAE) HSP 1 Score: 261 bits (668), Expect = 6.550e-78 Identity = 156/204 (76.47%), Postives = 177/204 (86.76%), Query Frame = 1
Query: 205 RHVVEHKWRFDAARNKMRIDTRLVNKKSPNRAANKETRYVQNTEEAVSSEAVEMVNRVLKNKRDMFLRAHGGEAGXXXXXXXXXXRNVDGELADPVITALRSGGRARSGVETGKPDEQEAEEVDWRTQDAKTFLASLNSKESSHDALEFLASKGLEAAKEILRRNRELEVMARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA 816
+++VEHKWRFDAARNK+R++T+ VNKKSPNR ++KETRYV+NTEEAVSSEA+EM +RVLK KRD+FLR +GG+ XXXXXXXXXX D ELADPVI ALR GGR RSGVETGKPDEQE DA++FLA LNSKESS DALEFLASKGL+AAKE+ RR REL+V+ARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA
Sbjct: 47 KYLVEHKWRFDAARNKVRLETKFVNKKSPNRPSDKETRYVENTEEAVSSEALEMADRVLKKKRDVFLRENGGDXXXXXXXXXXXXX-XDDELADPVIVALRGGGRTRSGVETGKPDEQE---------DAESFLAFLNSKESSSDALEFLASKGLDAAKEVRRRIRELDVLARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA 240
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT7_9PHAE) HSP 1 Score: 184 bits (468), Expect = 1.630e-48 Identity = 112/232 (48.28%), Postives = 152/232 (65.52%), Query Frame = 1
Query: 124 MSAAAPGPALAVTKPGKCERIVFIGTTRHVVEHKWRFDAARNKMRIDTRLVNKKSPNRAANKETRYVQNTEEAVSSEAVEMVNRVLKNKRDMFLRAHGGEAGXXXXXXXXXXRNVDGELADPVITALRSGGRARSGVETGKPDEQEAEEVDWRTQDAKTFLASLNSKESSHD-ALEFLASKGLEAAKEILRRNRELEVMARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA 816
MSAA GPA AV+KPGKCE ++ +G HV++H+WR D +R ++ + T LV+KKSPNR++NK+ +V NTEE V+S+A+EM +R+LKNKR+ + +AHG +G RN D E+AD + ALR GR RSG +P E A DWR Q +TF+AS++S +D AL L G + AKE R RELE SL+RA+EQAQ+QR T +G RT+QT+LTA
Sbjct: 1 MSAAEAGPAAAVSKPGKCEHMLLLGNQTHVIQHEWRPDKSRGEVLLITTLVDKKSPNRSSNKQQVFVANTEERVASKALEMAHRLLKNKRERWEKAHG-RSGGSRSSGGGARRNADREVADLFMAALRGCGRTRSGSTISEPAEPTAP-ADWRQQSTETFIASMDS--MGYDKALHHLEGTGSKFAKETRVRLRELEAKVSTAVSLERALEQAQRQRRTKEGSRTFQTILTA 228
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9U0_9PHAE) HSP 1 Score: 174 bits (440), Expect = 2.790e-48 Identity = 85/127 (66.93%), Postives = 100/127 (78.74%), Query Frame = 3
Query: 816 AAFMVED-EEGSQLSAQRTAAAIDVRKQSFNFAVGRADKLNPDLHPTEALRDDVYWFCPRAKRSDAASD*LVSLMRQYWHTDEVSRATGNSADRDMWKASKSPNAERHPRRQLIEVGGGDAVYAKFL 1193
AAF V+D +E +SA+R AAA+ VR+Q+FNFA RA KL DL PTE ++ VYWF PRAK+S+AAS+ L+ LMRQYWHTDEV R GNSA+RDMWK SKSP A RHPRRQL E GGG+AVYAKFL
Sbjct: 89 AAFPVDDVDEAPSVSARRRAAALGVREQAFNFAAERAKKLLSDLQPTEEIKRGVYWFWPRAKQSNAASEELLELMRQYWHTDEVLRQHGNSAERDMWKESKSPTAHRHPRRQLTERGGGEAVYAKFL 215
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEY9_9PHAE) HSP 1 Score: 181 bits (460), Expect = 4.840e-47 Identity = 114/231 (49.35%), Postives = 149/231 (64.50%), Query Frame = 1
Query: 124 MSAAAPGPALAVTKPGKCERIVFIGTTRHVVEHKWRFDAARNKMRIDTRLVNKKSPNRAANKETRYVQNTEEAVSSEAVEMVNRVLKNKRDMFLRAHGGEAGXXXXXXXXXXRNVDGELADPVITALRSGGRARSGVETGKPDEQEAEEVDWRTQDAKTFLASLNSKESSHDALEFLASKGLEAAKEILRRNRELEVMARVGASLKRAIEQAQKQRSTSDGHRTWQTLLTA 816
MSAA G A V+KPGKCERI+++G RHVV H+WR ++ + T LV+KK+PNR++NK YV+NTEE+++S+A+EM VLKNKR+ + +A G G RN D E+ADPV+ ALR GGR RS V T +P E A VDWR Q +TFLAS++S +AL+ L AK+ +R RELE SL+RAIEQA+KQR T +G RT QT+LTA
Sbjct: 1 MSAAGAGLAAPVSKPGKCERILWLGKVRHVVRHEWRLHKGSGEVLLTTTLVDKKNPNRSSNKRQVYVENTEESITSKALEMARIVLKNKREKWEKAQGHSGGSSSGGGPR--RNADREVADPVMAALRGGGRTRSRVVTIQPAEPTAP-VDWRQQCTETFLASMDSM-GYDNALKHLEEIVSTFAKDARKRLRELEDKVSTAVSLERAIEQARKQRRTKEGSRTLQTILTA 227
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI10_9PHAE) HSP 1 Score: 182 bits (461), Expect = 6.950e-47 Identity = 87/126 (69.05%), Postives = 101/126 (80.16%), Query Frame = 3
Query: 816 AAFMVEDEEGSQLSAQRTAAAIDVRKQSFNFAVGRADKLNPDLHPTEALRDDVYWFCPRAKRSDAASD*LVSLMRQYWHTDEVSRATGNSADRDMWKASKSPNAERHPRRQLIEVGGGDAVYAKFL 1193
AAF V+ + +SA+R AA + V+K++F FAV RA KL DL+PTEA++ VYWF PRAKRSDAAS+ L+ LMRQYWHTDEVSR GNSA+RDMWKASKSP A RHPRRQL E GGGDAVYAKFL
Sbjct: 206 AAFRVDVDGAPSISARRRAAVLGVQKRAFTFAVERAKKLLSDLNPTEAIKRGVYWFWPRAKRSDAASEELLELMRQYWHTDEVSRQHGNSAERDMWKASKSPTAHRHPRRQLTEAGGGDAVYAKFL 331
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ5_9PHAE) HSP 1 Score: 171 bits (432), Expect = 4.660e-46 Identity = 89/148 (60.14%), Postives = 105/148 (70.95%), Query Frame = 3
Query: 762 EAAKHQRRASNMANTPH----CAAFMVEDEEGSQLSAQRTAAAIDVRKQSFNFAVGRADKLNPDLHPTEALRDDVYWFCPRAKRSDAASD*LVSLMRQYWHTDEVSRATGNSADRDMWKASKSPNAERHPRRQLIEVGGGDAVYAKFL 1193
E A+ QRR +T AAF V+ + +SA+R AA + V++++F FA RA KL DLHPTE ++ VYWF PRAKRSDAAS+ L+ LMRQY HTDEVSR NSA+RDMWKASKSP A RHPRRQL E GGGDAVYAKFL
Sbjct: 142 EQAQMQRRTIEGRHTLQTILTAAAFPVDVDGAPSISARRRAAVLGVQERAFTFAAERAKKLLSDLHPTEVIKRGVYWFWPRAKRSDAASEELLELMRQYRHTDEVSRQHCNSAERDMWKASKSPTAHRHPRRQLAEPGGGDAVYAKFL 289
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ62_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.290e-44 Identity = 85/127 (66.93%), Postives = 100/127 (78.74%), Query Frame = 3
Query: 816 AAFMVEDEEGS-QLSAQRTAAAIDVRKQSFNFAVGRADKLNPDLHPTEALRDDVYWFCPRAKRSDAASD*LVSLMRQYWHTDEVSRATGNSADRDMWKASKSPNAERHPRRQLIEVGGGDAVYAKFL 1193
AAF V+D +G+ +SA+RTAAA+ VR+Q+FNFA A KL DL PTEA++ VYWF PRAK+S+AAS+ L+ LMRQYWH DEVSR GNSA+RDMWK SKSP A RHPRRQ E GGG AVYAKFL
Sbjct: 47 AAFPVDDVDGAPSVSARRTAAALGVREQAFNFAAEPAKKLLSDLQPTEAIKRGVYWFWPRAKQSNAASEELLELMRQYWHMDEVSRQHGNSAERDMWKESKSPTAHRHPRRQHTEPGGGVAVYAKFL 173
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ3_9PHAE) HSP 1 Score: 167 bits (424), Expect = 2.680e-44 Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 3
Query: 762 EAAKHQRRASNMANTPH----CAAFMVEDEEGS-QLSAQRTAAAIDVRKQSFNFAVGRADKLNPDLHPTEALRDDVYWFCPRAKRSDAASD*LVSLMRQYWHTDEVSRATGNSADRDMWKASKSPNAERHPRRQLIEVGGGDAVYAKFL 1193
E A+ QRR ++T A++ V+D +G+ +SA+R AAA+ VR+Q+FNFA RA KL DL PTEA++ VYWF RAK+S+A S+ L+ LMRQYWHTDE+SR GNSA+RDMW SKSP A RHPR QL E GGG+AVYAKFL
Sbjct: 173 EQAQRQRRTKEGSHTFQTILTAASYPVDDVDGAPSVSARRRAAALGVREQAFNFAAERAKKLLSDLQPTEAIKRGVYWFWVRAKQSNAPSEELLELMRQYWHTDEMSRQHGNSAERDMWNESKSPTAHRHPRWQLTEPGGGEAVYAKFL 321
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ7_9PHAE) HSP 1 Score: 169 bits (427), Expect = 9.800e-43 Identity = 83/123 (67.48%), Postives = 98/123 (79.67%), Query Frame = 3
Query: 828 VEDEEGS-QLSAQRTAAAIDVRKQSFNFAVGRADKLNPDLHPTEALRDDVYWFCPRAKRSDAASD*LVSLMRQYWHTDEVSRATGNSADRDMWKASKSPNAERHPRRQLIEVGGGDAVYAKFL 1193
V+D +G+ +SA+R AAA+ VR+Q+FNFA RA KL DL PTEA + VYWF PRAK+S+AAS+ L+ LMRQYWHTDEVSR GNSA+RDMWK SKS A RHPRRQL E GGG+AVYAKFL
Sbjct: 56 VDDVDGAPSVSARRRAAALGVREQAFNFAAERAKKLLSDLQPTEATKRCVYWFWPRAKQSNAASEELLELMRQYWHTDEVSRQHGNSAERDMWKESKSLTAHRHPRRQLTEPGGGEAVYAKFL 178 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9759.17857.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9759.17857.1 >prot_Ecto-sp9_F_contig9759.17857.1 ID=prot_Ecto-sp9_F_contig9759.17857.1|Name=mRNA_Ecto-sp9_F_contig9759.17857.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=264bp MSAAAPGPALAVTKPGKCERIVFIGTTRHVVEHKWRFDAARNKMRIDTRLback to top mRNA from alignment at Ecto-sp9_F_contig9759:282..1775+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9759.17857.1 ID=mRNA_Ecto-sp9_F_contig9759.17857.1|Name=mRNA_Ecto-sp9_F_contig9759.17857.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9759:282..1775+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9759:282..1775+ >mRNA_Ecto-sp9_F_contig9759.17857.1 ID=mRNA_Ecto-sp9_F_contig9759.17857.1|Name=mRNA_Ecto-sp9_F_contig9759.17857.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1584bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9759:282..1775+ (Ectocarpus species9 EcSCA_722f female)back to top |