mRNA_Ecto-sp9_F_contig9749.17848.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9749.17848.1
Unique NamemRNA_Ecto-sp9_F_contig9749.17848.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM4_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 8.650e-120
Identity = 249/278 (89.57%), Postives = 252/278 (90.65%), Query Frame = 1 
Query:    4 DLAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDWFLRFREPQPPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQPVRGDVTEAGEEEEDDGHSDLDLAAHVVREFIVRAVESGELAGEVNGXXXXXXXXXXXXXXXXXXXXX-----MIQTMRSDGDLSDSDGQSQGEFGSNPKEDFGGFAGFHREGQDALEQTG 822
            DLAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARR PFESAVSQIELHDRLQ    QDLAV+DLIKLVPGHSPQFEQVLRGCLQPIPEER TP ELLELDWFLRFREPQPPVV    XXXX     XXXXXXXXXXXXXXXXXXXXELQPVRGDV EAGEEEE DGHSDLDLAAHVVREF+VRAVESGEL GEVNG XXXXXXXXXXXXXXXXXXXX     MIQTMRSDGDLSDSDGQSQGEFGS+PKEDFGGFAGFHREGQDALE TG
Sbjct:  220 DLAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRLPFESAVSQIELHDRLQ----QDLAVDDLIKLVPGHSPQFEQVLRGCLQPIPEERLTPAELLELDWFLRFREPQPPVVSEESXXXXTGGERXXXXXXXXXXXXXXXXXXXXELQPVRGDVAEAGEEEEADGHSDLDLAAHVVREFMVRAVESGELVGEVNGGXXXXXXXXXXXXXXXXXXXXXXXXXMIQTMRSDGDLSDSDGQSQGEFGSDPKEDFGGFAGFHREGQDALEHTG 493
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAP3_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.050e-81
Identity = 194/206 (94.17%), Postives = 198/206 (96.12%), Query Frame = 1 
Query:  205 AVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDWFLRFREPQPPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQPVRGDVTEAGEEEEDDGHSDLDLAAHVVREFIVRAVESGELAGEVNGXXXXXXXXXXXXXXXXXXXXXMIQTMRSDGDLSDSDGQSQGEFGSNPKEDFGGFAGFHREGQDALEQTG 822
            A+EDLIKLVPGHSPQFEQVLRGCLQPIPE+R TP+ELLELDWFLRFREPQPPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LQ VRGDV EAGEEEE DGHSDLDLAAHVVREFIVRAVESGEL GEVNG XXXXXXXXXXXXXXXXXXX MIQTMRSDGDLSDSDGQSQGEFGS+PKEDFGGFAGFHREGQDALEQTG
Sbjct:    3 ALEDLIKLVPGHSPQFEQVLRGCLQPIPEDRLTPVELLELDWFLRFREPQPPVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALQTVRGDVAEAGEEEEADGHSDLDLAAHVVREFIVRAVESGELVGEVNGGXXXXXXXXXXXXXXXXXXX-MIQTMRSDGDLSDSDGQSQGEFGSDPKEDFGGFAGFHREGQDALEQTG 207
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL4_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 6.030e-19
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    4 DLAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDWFLRF 342
            ++A T+VGT RYMSP RL GD YG  +D+WSLGV+L+E AAR  PF S+ +QIEL     A+ +++L ++++  L P  S +F +++R CL P PE+R    +LLE  W  +F
Sbjct:  130 NMASTIVGTFRYMSPGRLRGDPYGPPSDIWSLGVMLIECAARSLPFPSSNTQIEL-----AQALEELEIDEM--LPPDFSDEFCEMVRLCLAPAPEDRPRAEQLLEGPWLEKF 235
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX05_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.500e-15
Identity = 42/108 (38.89%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:    7 LAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDW 330
            +A TM+GT +YMSPERL GD Y  + D+WSLG++L+EM  +R PF +  +Q+++     A+++ ++  EDLI    G S +  + ++ CLQ  P +R +  +L +L W
Sbjct:  205 MATTMIGTYKYMSPERLKGDAYDSSGDIWSLGIVLIEMVTQRTPFPNVDNQLDM-----AQELLEMKNEDLIPTGEGCSSELCEFIQACLQRNPADRLSTEQLFKLPW 307
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A392_TRICV)

HSP 1 Score: 82.0 bits (201), Expect = 6.670e-15
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    7 LAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDWF 333
            +++T+VGT RYMSPERL+   YG ++D+WSLG++L E A  R P     S +EL        I++ +VEDLI   P  S    +VL GCLQ  PE R     L++  WF
Sbjct:    3 MSETVVGTARYMSPERLSRKRYGPSSDIWSLGLVLAECATGRSPLGRINSMVEL-----VLTIEETSVEDLI--APELSKGLREVLFGCLQSSPERRMPAKILVKSPWF 104
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TA69_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.350e-14
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 QDLAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDWF 333
            Q++  T+VGT RYMSPERL    YG ++D+WSLG++LLE    + PFE   SQ+EL        +++ + ++ I  V   SP   ++L+ CLQ  PE R     L+   WF
Sbjct:   94 QEMNVTVVGTTRYMSPERLRAKPYGSSSDLWSLGLVLLECCTGKSPFEDVTSQVEL-----LLTVEETSADEWIP-VDTLSPGLVEILKSCLQQSPERRIPASILIGSPWF 198
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z3W8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.520e-13
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 QDLAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDWF 333
            Q++  T+VGT RYMSPERL    YG ++D+WSLG++LLE    + PFE   SQ+EL        +++ + ++ I  V   SP   ++L+ CLQ  PE R     L+   WF
Sbjct:  230 QEMNVTVVGTTRYMSPERLRAKPYGSSSDLWSLGLVLLECCTGKSPFEDVTSQVEL-----LLTVEETSADEWIP-VDTLSPGLVEILKSCLQQSPERRIPASILIGSPWF 334
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.820e-12
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1 
Query:    7 LAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDL---AVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELLELDWFL 336
            + +T+VGT+RYMSPERL G+ YG  ADVW LG++++E   +  P+    SQIE+   L+      L     ED + L    S  F   +  CL   PE+R +  ELL   WF+
Sbjct:  505 MVETVVGTVRYMSPERLHGEAYGRPADVWGLGLVMIECVTQEAPYADGCSQIEILQTLKEHGGSGLLPSGTEDRVPL----SDAFVGFVGDCLMVNPEDRLSTAELLNSRWFV 613
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CH03_DIALT)

HSP 1 Score: 77.8 bits (190), Expect = 1.130e-11
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:   22 VGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLIKLVPGH-SPQFEQVLRGCLQPIPEERFTPIELLELDW 330
            VGT+ YMSPER+ G  Y   +D+WSLG+ LLE+A  R P+    S +E  +RL    + D  VE+ +  +P H S  F + L  CLQ  PE+R +  +LLE  W
Sbjct:  229 VGTVHYMSPERICGGSYSFNSDLWSLGLSLLELALGRFPY----SPLESTERLGFWDLLDFIVEEPVPPMPAHLSAPFAEFLALCLQKAPEKRPSSSDLLEHPW 328
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDW5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.450e-11
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    7 LAQTMVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIELHDRLQARKIQDLAVEDLI-KLVPGHSPQFEQVLRGCLQPIPEER 297
            L QT+VGT RY+SPERL  + YG  +DVWSLG++LLE A  R PFE   S +EL        I++  VEDLI K + G      Q+L  CL+  PE R
Sbjct:  252 LNQTVVGTTRYLSPERLGANPYGAKSDVWSLGLVLLECACGRSPFEGITSIVELW-----MTIKETPVEDLIPKEITG---SLRQLLVLCLKKTPEAR 341
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9749.17848.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein8.650e-12089.57kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Uncharacterized3.050e-8194.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical6.030e-1946.02protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical1.500e-1538.89protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical6.670e-1543.12protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical7.350e-1439.64protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical4.520e-1339.64protein (Fragment) n=1 Tax=Ditylum brightwellii Ta... [more]
Protein6.820e-1238.94kinase domain-containing protein n=2 Tax=Ectocarpu... [more]
Protein1.130e-1142.31kinase domain-containing protein n=2 Tax=Diacronem... [more]
Hypothetical2.450e-1147.96protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9749contigEcto-sp9_F_contig9749:395..4017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.9
Seed ortholog evalue1.6e-98
Seed eggNOG ortholog2880.D7FTM4
EggNOG free text desc.MAP kinase kinase activity
EggNOG OGsKOG0581@1,KOG0581@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1797
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9749.17848.1prot_Ecto-sp9_F_contig9749.17848.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9749 413..3045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.6824894-UTR-Ecto-sp9_F_contig9749:394..4121622931065.6824894-UTR-Ecto-sp9_F_contig9749:394..412Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9749 395..412 +
1692279016.4749687-UTR-Ecto-sp9_F_contig9749:394..4121692279016.4749687-UTR-Ecto-sp9_F_contig9749:394..412Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9749 395..412 +
1622931065.7683356-UTR-Ecto-sp9_F_contig9749:3045..40171622931065.7683356-UTR-Ecto-sp9_F_contig9749:3045..4017Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9749 3046..4017 +
1692279016.5278604-UTR-Ecto-sp9_F_contig9749:3045..40171692279016.5278604-UTR-Ecto-sp9_F_contig9749:3045..4017Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9749 3046..4017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.7032151-CDS-Ecto-sp9_F_contig9749:412..4361622931065.7032151-CDS-Ecto-sp9_F_contig9749:412..436Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 413..436 +
1692279016.4858317-CDS-Ecto-sp9_F_contig9749:412..4361692279016.4858317-CDS-Ecto-sp9_F_contig9749:412..436Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 413..436 +
1622931065.7226884-CDS-Ecto-sp9_F_contig9749:858..10111622931065.7226884-CDS-Ecto-sp9_F_contig9749:858..1011Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 859..1011 +
1692279016.4985764-CDS-Ecto-sp9_F_contig9749:858..10111692279016.4985764-CDS-Ecto-sp9_F_contig9749:858..1011Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 859..1011 +
1622931065.7383986-CDS-Ecto-sp9_F_contig9749:1533..20361622931065.7383986-CDS-Ecto-sp9_F_contig9749:1533..2036Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 1534..2036 +
1692279016.5084085-CDS-Ecto-sp9_F_contig9749:1533..20361692279016.5084085-CDS-Ecto-sp9_F_contig9749:1533..2036Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 1534..2036 +
1622931065.7523878-CDS-Ecto-sp9_F_contig9749:2918..30451622931065.7523878-CDS-Ecto-sp9_F_contig9749:2918..3045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 2919..3045 +
1692279016.5181022-CDS-Ecto-sp9_F_contig9749:2918..30451692279016.5181022-CDS-Ecto-sp9_F_contig9749:2918..3045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9749 2919..3045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9749.17848.1

>prot_Ecto-sp9_F_contig9749.17848.1 ID=prot_Ecto-sp9_F_contig9749.17848.1|Name=mRNA_Ecto-sp9_F_contig9749.17848.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=269bp
MVGTIRYMSPERLAGDGYGVAADVWSLGVLLLEMAARRRPFESAVSQIEL
HDRLQARKIQDLAVEDLIKLVPGHSPQFEQVLRGCLQPIPEERFTPIELL
ELDWFLRFREPQPPVVPEESGGGGTGGERSSAGGTGGGGVSEGGGGGGGE
LQPVRGDVTEAGEEEEDDGHSDLDLAAHVVREFIVRAVESGELAGEVNGG
GGGVSQQREEQHRRGSSGGGMIQTMRSDGDLSDSDGQSQGEFGSNPKEDF
GGFAGFHREGQDALEQTG*
back to top

mRNA from alignment at Ecto-sp9_F_contig9749:395..4017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9749.17848.1 ID=mRNA_Ecto-sp9_F_contig9749.17848.1|Name=mRNA_Ecto-sp9_F_contig9749.17848.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3623bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9749:395..4017+ (Ectocarpus species9 EcSCA_722f female)
CAGGACCTAGCGCAGACGATGGTCGGGACGATACGGTATATGGTGAGTGA
CTGCTGGGGAAGGCTTGAGTGCAATGTAGTACAGTACACGAGATACTGCA
ACAACTCGTTGCGCCCCGAGGTGGTCTTTCGCAGCACTTTTCCGTGCCTT
TGCAAGCGGCGTGTGTGCCGTACAGATTTGTCCCTGATTTCCGGCAGTCT
TGATTCGAGGAGCGCACCGTCCCCTGATCACCAACCCTTGATGCTCGAAA
GCACTTGTGAAAACCTTTCTCGTATGCCCCTCGAAAATGTTTTCATGATT
TCCGATCCTTTTCTCAAGAGCCTCTGCGTGTCTGTTCATCACTGGTGGTA
TCTTTTTCGGGGCGAGGGTTCGTTTGGAATCGACCAAGTCACCAACAACA
CTTCACGTACAACTGTTTTTCGTCTGTTTGCCTGACTGACGTCATCGCGC
CGGAACGACCGCAGTCGCCCGAAAGGCTTGCGGGTGATGGGTACGGCGTG
GCGGCTGACGTGTGGTCCCTGGGGGTGCTGCTGCTCGAGATGGCGGCGCG
AAGGCGTCCGTTTGAGAGCGCCGTTTCGCAGATTGAGCTCCATGACAGAT
TGCAGGCGAGAAAAATTGTTGCGGATTGTTATTGCCATGCACCGTGTTCC
CTGAATTTTCGCGCAGCGTGGTTCCGATACGGTTCGGAGCTGTGGAATCG
ACATGTCTTGGTGTTGGTGAGTTGTGCTTCTTGAATCATGTTTTTTAGCG
CTCTTTGTTTAGGGGGGAAGGCTTATCGGGGTTGCGGGCACGGGCAGGGG
TGCACGATCTATCCTGCCCCTACACAAGCCCTTAGTAAGCTTGTTGCGAC
CCATGCCGTTGCCTGACCTGACCTACCCGAAATCTCTTCCACACGATCGT
GCACTACGTTCGGCAACGACCTTTGTCACGACCCTGTTAACCGTTGGCCG
TGTCCTTCATCCCTCTTGGATCAATCAAGTGAATGCCCGCCATCCCTTTT
CTCGCGTGGCTCTGTTTCTCTCTGTCTCTCACTCTCTCTCCTCTTTCTCT
CTCTCCCCCTCTCCCTCTCTCTCTCCCCCGCATTCTCGCCCTCTCTCCCT
CCCTCCATCCCTCCCTCCCTCTCTCTCCCAACCCCTCAGCAAGACCTAGC
GGTGGAGGACCTGATCAAGCTCGTCCCCGGGCACTCCCCACAGTTCGAGC
AGGTTCTGCGGGGATGCCTCCAGCCTATCCCCGAAGAACGCTTCACTCCG
ATAGAGCTCCTCGAGCTCGACTGGTTCCTACGCTTCCGCGAGCCGCAGCC
GCCGGTGGTCCCGGAAGAAAGCGGGGGCGGGGGGACTGGGGGAGAAAGAT
CATCCGCTGGAGGGACGGGAGGAGGCGGGGTTAGCGAGGGAGGTGGGGGC
GGAGGCGGGGAACTCCAACCAGTACGCGGAGATGTCACCGAAGCGGGCGA
GGAAGAAGAGGACGACGGGCACTCGGACCTAGACCTGGCGGCTCATGTGG
TGCGGGAGTTCATAGTGAGGGCCGTGGAGAGCGGGGAGCTGGCCGGAGAG
GTTAACGGAGGAGGAGGAGGCGTTTCCCAGCAGAGGGAGGAGCAGCATCG
GCGGGGCTCTTCGGGTGGCGGCATGATCCAGACGATGCGAAGGTATATAA
AGTGATGTCTATTGAAGTAGTTTTTTTTTTGTATATATTCGGACAATCCC
AGAAAGAATGCCCCTCTTTTTTTCTGTTTCGTGTGAGCTCGTGGAGTGTT
TGCCGGGTGTGCCATGCCCTCATGCGGGTTGGGTACAACCGAGGATACAT
CTCTTTTAGGAGGTATATTGAGCGCGTTGCTGTGTGCTTGTCGCGTGTTT
TTGTGCACTTGCTTCGGGTTGGTTTTGGTCACTTGGTACGGCTTCTCAAA
CCACTACATCACCCCAGCATGCATTCTTCTAATCCTGTCGTCCGCGTGCA
TGGAGTACTGGTAGTGATTGTTGCTTCTTGTTTTGTGAAGTACCGCCAAG
AGATGATTCATTCGCCTACGCTTGAAGTCACCGCCTTCGCCGATGGATGT
ACCACGTGTAGCAGGAGGGGAGTTGTCTTGGCGCCGCGTGCTACGCTTCT
GTAGGGATTTTTTTTCCTGTCTGCACAGACGGGTGCGGGGCACGGTACAA
ACCCATCTCGCCGCGCTTCTTTCTCGCTGGCTCAATCATGGTCTTCTTCG
GGCATGGATGGGTGCACTCGCTTGCGCATTTTCGCTCATCACTGTTTATT
TTTCTCAATATTACGCAACCAGTCAATCTCCATTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCTTTTTGTTTTTGTTTTTATTATTCTGCGTCTTTGCTAC
TGTCTTCATCTCCATCAGTNNNNNNNNNNCGCGTCTCCCCCCCCCCCTGT
TTTTTTTTCTCTCTCTTACGCCTCCCGTCTGTCTCCTTTTTTTTTTTTTT
TTTTGCCCCCGCGTCCTCTGCGTGTCTGTGCATTGATGAACCGCCGCCGC
TGCTACCGGCATCATCACCATCAGTGACGGTGACCTGAGCGACTCGGACG
GCCAGAGCCAGGGGGAGTTCGGGTCGAACCCTAAAGAAGACTTCGGCGGG
TTCGCGGGTTTCCACCGGGAAGGGCAGGATGCGCTGGAGCAGACGGGGTA
GGTTTAGCTCGGGGGAAACCTTTGGCGTTTCGCAGGTTTACAATAGCGTA
GATGGAAAGTGTCCACGCGAAACAAACAGGTCACGGTATTGATAGATGAG
GCCGCGTGGGGATTTATAGAATTAGGTAGGTAGGTGTGAGCATGACAGGA
GAGGGAAGAGAGAGGGACTTTTAAGCCCCCTTACCTTCAACCCAGGGTTG
AATCGCGCACTTTAGTGCCGCCTGCAGCAAATGCGTGTGCTGTTTTGCTT
TGTGTATGCGAAAACTAGTGTGTATGATAGGGTAGGGCTAGGGTGCGCAC
GCAGCTCGTTGTAGGTTTATTGCTTGTTTTGTTGCTTTCTATACTCGAAA
TGTTATGTGCATGATTGGGTCAGGGCATACAGTACTACGCCGGCGCGTGC
ATTTTGTATTGCTAGTCTTTGCCACCCTCTGTGGCACGCGAACTTAATGT
TTATGGTATGGTAGGGTTTGGGTACGCCAGCGGCGCATGTATTTTATTGC
TTGTTTTGTTGCCTTCCGTACACCAAAATAATATGTGTATATTACAGTAA
TACGCCGGCGACGCGTGTCTTTATTTCTAATTTTGTTGCTTGGTGTGGGC
GAAACGATTGTGTACGATAGGGTAGGGCATAGGTACGCCAGCAATGGCGT
ATGCTTGATTTCTTGTCTTGCAGCTCTTCTGTACAGTTTGTATGGAAGGG
TCGGGCGTATGTGTAGAGACGCCAGCGTTGTGGGAGTCTTTTCTGTATTT
CACAGCGTTTTCAAGATCTTTTTCGCATTGAATTGATTGCCGTTAAGGCG
ATGGAAAATACGGGGATACTTTTGCGGAACGGCTTGGGCCCTTGGGCGCG
GGTTGTCTCGCGACGTTAGATTACGATGCGGGCGGAGAACGAATTGTTGC
TGGCACCCTCTTGTCGGTGATTGTGGTGGGTACAGGCGTTGGATGTAATG
AATTTGGCTCTGAAGAAGTTTGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9749:395..4017+

>mRNA_Ecto-sp9_F_contig9749.17848.1 ID=mRNA_Ecto-sp9_F_contig9749.17848.1|Name=mRNA_Ecto-sp9_F_contig9749.17848.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9749:395..4017+ (Ectocarpus species9 EcSCA_722f female)
ATGGTCGGGACGATACGGTATATGATGGTCGGGACGATACGGTATATGTC
GCCCGAAAGGCTTGCGGGTGATGGGTACGGCGTGGCGGCTGACGTGTGGT
CCCTGGGGGTGCTGCTGCTCGAGATGGCGGCGCGAAGGCGTCCGTTTGAG
AGCGCCGTTTCGCAGATTGAGCTCCATGACAGATTGCAGGCGAGAAAAAT
TTCGCCCGAAAGGCTTGCGGGTGATGGGTACGGCGTGGCGGCTGACGTGT
GGTCCCTGGGGGTGCTGCTGCTCGAGATGGCGGCGCGAAGGCGTCCGTTT
GAGAGCGCCGTTTCGCAGATTGAGCTCCATGACAGATTGCAGGCGAGAAA
AATTCAAGACCTAGCGGTGGAGGACCTGATCAAGCTCGTCCCCGGGCACT
CCCCACAGTTCGAGCAGGTTCTGCGGGGATGCCTCCAGCCTATCCCCGAA
GAACGCTTCACTCCGATAGAGCTCCTCGAGCTCGACTGGTTCCTACGCTT
CCGCGAGCCGCAGCCGCCGGTGGTCCCGGAAGAAAGCGGGGGCGGGGGGA
CTGGGGGAGAAAGATCATCCGCTGGAGGGACGGGAGGAGGCGGGGTTAGC
GAGGGAGGTGGGGGCGGAGGCGGGGAACTCCAACCAGTACGCGGAGATGT
CACCGAAGCGGGCGAGGAAGAAGAGGACGACGGGCACTCGGACCTAGACC
TGGCGGCTCATGTGGTGCGGGAGTTCATAGTGAGGGCCGTGGAGAGCGGG
GAGCTGGCCGGAGAGGTTAACGGAGGAGGAGGAGGCGTTTCCCAGCAGAG
GGAGGAGCAGCATCGGCGGGGCTCTTCGGGTGGCGGCATGATCCAGACGA
TGCGAAGCAAGACCTAGCGGTGGAGGACCTGATCAAGCTCGTCCCCGGGC
ACTCCCCACAGTTCGAGCAGGTTCTGCGGGGATGCCTCCAGCCTATCCCC
GAAGAACGCTTCACTCCGATAGAGCTCCTCGAGCTCGACTGGTTCCTACG
CTTCCGCGAGCCGCAGCCGCCGGTGGTCCCGGAAGAAAGCGGGGGCGGGG
GGACTGGGGGAGAAAGATCATCCGCTGGAGGGACGGGAGGAGGCGGGGTT
AGCGAGGGAGGTGGGGGCGGAGGCGGGGAACTCCAACCAGTACGCGGAGA
TGTCACCGAAGCGGGCGAGGAAGAAGAGGACGACGGGCACTCGGACCTAG
ACCTGGCGGCTCATGTGGTGCGGGAGTTCATAGTGAGGGCCGTGGAGAGC
GGGGAGCTGGCCGGAGAGGTTAACGGAGGAGGAGGAGGCGTTTCCCAGCA
GAGGGAGGAGCAGCATCGGCGGGGCTCTTCGGGTGGCGGCATGATCCAGA
CGATGCGAAGTGACGGTGACCTGAGCGACTCGGACGGCCAGAGCCAGGGG
GAGTTCGGGTCGAACCCTAAAGAAGACTTCGGCGGGTTCGCGGGTTTCCA
CCGGGAAGGGCAGGATGCGCTGGAGCAGACGGGGTAGTGACGGTGACCTG
AGCGACTCGGACGGCCAGAGCCAGGGGGAGTTCGGGTCGAACCCTAAAGA
AGACTTCGGCGGGTTCGCGGGTTTCCACCGGGAAGGGCAGGATGCGCTGG
AGCAGACGGGGTAG
back to top