mRNA_Ecto-sp9_F_contig9748.17847.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9748.17847.1
Unique NamemRNA_Ecto-sp9_F_contig9748.17847.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: GT4 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS6_9PHAE)

HSP 1 Score: 471 bits (1212), Expect = 4.670e-161
Identity = 237/250 (94.80%), Postives = 243/250 (97.20%), Query Frame = 1 
Query:    4 AVQQVQREARERYDAAVAAAEQRDSDGKVALPSRVVGICVGEGEAMRTLRGADGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYRSCRETQNKTFRARVAKKRGLPFWEAFGLLIYYVFEAAKMMTAAVAFFTQGRDSEVVRLSVRAFRSHLALLGQLLFGLSCSS 753
            AVQQVQREA+ERYDAAVAAA QRDSD KV LP RVVGICVGEGEAMRTLRG DGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGD+DGYVEGLRKLVQDK+LRNKMSATGRQ+ALGYGTTQLYDGM+DIYRSCRETQNKTFRARVAKKRG PFWEAFGLLIYYVFEAAKMMTAA AFFT+GRDSEVVRLSVRAFRSHLALLGQLLFGLSCSS
Sbjct:  248 AVQQVQREAKERYDAAVAAAAQRDSDSKVPLPPRVVGICVGEGEAMRTLRGVDGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDQDGYVEGLRKLVQDKDLRNKMSATGRQMALGYGTTQLYDGMMDIYRSCRETQNKTFRARVAKKRGFPFWEAFGLLIYYVFEAAKMMTAAAAFFTEGRDSEVVRLSVRAFRSHLALLGQLLFGLSCSS 497
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTT6_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.190e-22
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:  112 GICVGEGEAMRTLRGADGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYRSCRE 522
            G+ VG+G     +   + V   GW +GEEL    AS D ++ PS++ETFG VTLEA++ G+PCVV + C  HLV++G NGF  PSGD + +    ++++ D  LR          A  Y  +++   ML+ Y+ C +
Sbjct:  291 GLVVGKGSFQTEMEALENVRVAGWLSGEELGVAYASADCLLFPSDVETFGNVTLEALASGVPCVVEQGCSGHLVENGKNGFTAPSGDVEKFYTATKRIIMDAQLRKSFRPKCVAKAKEYERSKILQRMLEHYKDCHQ 427
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5M5_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.900e-21
Identity = 67/195 (34.36%), Postives = 91/195 (46.67%), Query Frame = 1 
Query:  112 GICVGEGEAMRTLRGADGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDEDG------------YVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYRSCRETQNKTFRARVAKKRGLPFWEAFGLLIYYVFEAAKMMTAAVAFFTQG 660
            G  VG G       G   +  +GW +G ELA   AS DI++ PS++ETFG VTLEA+ CG+P VV   C  HLV DG  GF V  G +D             Y   +R+LV D +LR K +   R  A  Y  + +   M+D Y     TQ    R R   + G  F E    ++++ F  A  +   V +   G
Sbjct:  315 GAVVGVGPCQTYFDGIPYIQTLGWMSGVELAEAYASADILLFPSDVETFGNVTLEALGCGIPAVVEENCSRHLVSDGVEGFAVHQGIDDPNDRSQYEACLNRYFTKVRQLVVDPDLRAKCARNARVKADTYSNSMVQQRMIDNYHHALNTQ---VRNRAPPREGARFQEVRTNVLHWFFAYAARVVIFVLWLLLG 506
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYE6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.240e-20
Identity = 55/153 (35.95%), Postives = 77/153 (50.33%), Query Frame = 1 
Query:  106 VVGICVGEGEAMRTLRGADGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDEDG------------YVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYRSCRETQ 528
            V G+ VG G       G   V   GW +G  LA   AS DI++ PS++ETFG VTLEA++CG+P VV   C  HLV DG  G+ V  G +D             Y +  + +V D++LR + +   R  A  Y    +   M+D Y++  E Q
Sbjct:    2 VKGMVVGVGPCQNMFEGMSYVTVKGWLSGMALAEAYASSDILLFPSDVETFGNVTLEALACGVPSVVEHNCSQHLVTDGCEGYAVHQGVDDPDDKEQYAACVDRYYKATKSIVDDESLRRRFAHNARLKAETYSNRAVQQRMVDNYQNGFEVQ 154
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC69_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.970e-20
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:  160 DGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYR 510
            D  +C GW +G  L    AS DI++ PS++ETFG VTLEA+S G P VV ++CG+HLV  G NG     GD +G+ +  R+LV D  LR KM+   R+ A  +    +   M + Y+
Sbjct:  309 DATIC-GWLSGTSLGEAYASSDILLFPSDVETFGNVTLEALSSGCPAVVEKKCGEHLVDHGINGLTCQCGDAEGFYQATRRLVLDATLRKKMAVAARESAWKFERNIILQQMAENYK 424
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: glycosyltransferase (family 1 protein n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI0018E48E10)

HSP 1 Score: 97.8 bits (242), Expect = 3.710e-19
Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = 1 
Query:  100 SRVVGICVGEGEAMRTLRGA-DGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDH-LVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYRSCRET 525
            + +  + VG+G A   L+      V  G+  GE+LA   AS D+ + PS  ETFG VTLEAMSCGLPC+V    G   LV+DG NGF     D+  + E L+K+V+  +LR +M    R+ ALGY   ++   ++  YR    T
Sbjct:  236 AHIKAMVVGDGPAKAELQELMPEAVYTGFLNGEDLATAYASSDVFMFPSHTETFGNVTLEAMSCGLPCLVANATGSRSLVEDGVNGFLAEPQDKTDFTEKLKKIVESISLRKEMGERSREKALGYEWDEINGQLVQNYREVLNT 379
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Glycosyltransferase (involved in cell wall bisynthesis n=1 Tax=Fodinibius salinus TaxID=860790 RepID=A0A5D3YHH7_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 4.960e-19
Identity = 57/132 (43.18%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:  121 VGEGEAMRTLRGA-DGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDH-LVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYR 510
            VG+G A++ L          G+  G+EL+R  AS D+ + PSE ETFG VTLEAMS GLPCVV    G   LV+ G NGF  P  D + + E + K+V+D  L  +M    RQ AL Y    +   +LD YR
Sbjct:  241 VGDGPALKELEHMLTDAHFTGFITGDELSRAYASSDVFLFPSETETFGNVTLEAMSSGLPCVVADATGSRSLVESGVNGFLAPPRDTEVFAECIEKIVEDDELATEMGEAARQKALAYSWDNVNGKLLDNYR 372
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Glycosyl (transferase family 1 n=1 Tax=Sphingomonas hengshuiensis TaxID=1609977 RepID=A0A7U4J927_9SPHN)

HSP 1 Score: 96.3 bits (238), Expect = 1.210e-18
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:  163 GVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGD-HLVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIY 507
            G    G++ GE+LAR +AS D++  PS  ETFG VTLEAM+CG+P V  R  G   L++DG NGF VP  +  GY + + +L Q+  L     A+G   ALGY   ++   +L+ Y
Sbjct:  259 GAAFAGFQRGEDLARAVASMDVLFNPSVTETFGNVTLEAMACGVPVVAARATGAVDLIEDGVNGFLVPPREIAGYTDAIARLAQEPELAASAGASGHAKALGYEWDRINQAVLEAY 374
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Glycosyltransferase (family 1 protein n=2 Tax=Aliifodinibius TaxID=1397107 RepID=A0A6M1TBF0_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 1.730e-18
Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:  178 GWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDH-LVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYR 510
            G+  G+EL+R  AS DI + PSE ETFG VTLEAMS GLPCVV    G   LV+ G NGF  P  D  G+ + + KL+ D +L  +M    RQ A+ Y    +   +LD YR
Sbjct:  261 GFVTGDELSRAYASSDIFLFPSETETFGNVTLEAMSSGLPCVVADATGSRSLVESGVNGFLAPPRDTRGFAKCVAKLIDDSDLWQEMGEAARQKAIAYSWENVNGKLLDNYR 372
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Match: Glycosyltransferase (family 1 protein n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SP48_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 5.810e-18
Identity = 56/137 (40.88%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:  121 VGEGEAMRTLRGA-DGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDH-LVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGRQIALGYGTTQLYDGMLDIYRSCRET 525
            VG+G A + L     G    G+  G+EL R  AS DI + PS+ ETFG VTLEAMS GLPCVV    G   LV+ G NG+  P  +   +   + K+ QD  LR KM    RQ A+ Y    + + +L+ YR   E+
Sbjct:  238 VGDGPARKELETMLPGAHFTGFITGDELHRAYASSDIFLFPSDTETFGNVTLEAMSSGLPCVVADATGSRSLVESGVNGYLAPPRNTKEFAARVNKIAQDDKLREKMGKAARQKAIAYSWDNVNNKLLENYREALES 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9748.17847.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GT44.670e-16194.80protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Hypothetical1.190e-2237.23protein n=2 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical2.900e-2134.36protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.240e-2035.95protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical3.970e-2041.88protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
glycosyltransferase3.710e-1939.58family 1 protein n=1 Tax=Gracilimonas amylolytica ... [more]
Glycosyltransferase4.960e-1943.18involved in cell wall bisynthesis n=1 Tax=Fodinibi... [more]
Glycosyl1.210e-1842.24transferase family 1 n=1 Tax=Sphingomonas hengshui... [more]
Glycosyltransferase1.730e-1846.43family 1 protein n=2 Tax=Aliifodinibius TaxID=1397... [more]
Glycosyltransferase5.810e-1840.88family 1 protein n=1 Tax=Balneolaceae bacterium YR... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9748contigEcto-sp9_F_contig9748:1298..4469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.9
Seed ortholog evalue3.6e-119
Seed eggNOG ortholog2880.D8LSZ6
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsCOG0438@1,KOG1111@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1047
Cds size1047
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9748.17847.1prot_Ecto-sp9_F_contig9748.17847.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9748 1298..4469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.539749-CDS-Ecto-sp9_F_contig9748:1297..17471622931065.539749-CDS-Ecto-sp9_F_contig9748:1297..1747Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 1298..1747 -
1692279016.4125519-CDS-Ecto-sp9_F_contig9748:1297..17471692279016.4125519-CDS-Ecto-sp9_F_contig9748:1297..1747Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 1298..1747 -
1622931065.5576417-CDS-Ecto-sp9_F_contig9748:2312..24001622931065.5576417-CDS-Ecto-sp9_F_contig9748:2312..2400Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 2313..2400 -
1692279016.4243262-CDS-Ecto-sp9_F_contig9748:2312..24001692279016.4243262-CDS-Ecto-sp9_F_contig9748:2312..2400Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 2313..2400 -
1622931065.5798078-CDS-Ecto-sp9_F_contig9748:2605..26821622931065.5798078-CDS-Ecto-sp9_F_contig9748:2605..2682Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 2606..2682 -
1692279016.4344661-CDS-Ecto-sp9_F_contig9748:2605..26821692279016.4344661-CDS-Ecto-sp9_F_contig9748:2605..2682Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 2606..2682 -
1622931065.5946286-CDS-Ecto-sp9_F_contig9748:3227..33231622931065.5946286-CDS-Ecto-sp9_F_contig9748:3227..3323Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 3228..3323 -
1692279016.4450903-CDS-Ecto-sp9_F_contig9748:3227..33231692279016.4450903-CDS-Ecto-sp9_F_contig9748:3227..3323Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 3228..3323 -
1622931065.6116025-CDS-Ecto-sp9_F_contig9748:3777..38671622931065.6116025-CDS-Ecto-sp9_F_contig9748:3777..3867Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 3778..3867 -
1692279016.455003-CDS-Ecto-sp9_F_contig9748:3777..38671692279016.455003-CDS-Ecto-sp9_F_contig9748:3777..3867Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 3778..3867 -
1622931065.6279902-CDS-Ecto-sp9_F_contig9748:4223..44691622931065.6279902-CDS-Ecto-sp9_F_contig9748:4223..4469Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 4224..4469 -
1692279016.4648037-CDS-Ecto-sp9_F_contig9748:4223..44691692279016.4648037-CDS-Ecto-sp9_F_contig9748:4223..4469Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9748 4224..4469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9748.17847.1

>prot_Ecto-sp9_F_contig9748.17847.1 ID=prot_Ecto-sp9_F_contig9748.17847.1|Name=mRNA_Ecto-sp9_F_contig9748.17847.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=349bp
QAVQQVQREARERYDAAVAAAEQRDSDGKVALPSRVVGICVGEGEAMRTL
RGADGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPC
VVNRECGDHLVQDGSNGFCVPSGDEDGYVEGLRKLVQDKNLRNKMSATGR
QIALGYGTTQLYDGMLDIYRSCRETQNKTFRARVAKKRGLPFWEAFGLLI
YYVFEAAKMMTAAVAFFTQGRDSEVVRLSVRAFRSHLALLGQLLFGLSCS
SSSSSSAPPTLRSASSSSSLQLTPPPSTRKTSRPSPSSSSSRRSSSSHRS
PSSAMMPRSSSSSSSSSSSSSSARFSSSRPGSPAMMPRSASFSGVVVVP
back to top

mRNA from alignment at Ecto-sp9_F_contig9748:1298..4469-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9748.17847.1 ID=mRNA_Ecto-sp9_F_contig9748.17847.1|Name=mRNA_Ecto-sp9_F_contig9748.17847.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3172bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9748:1298..4469- (Ectocarpus species9 EcSCA_722f female)
CAGGCCGTGCAACAAGTCCAACGCGAGGCGAGGGAGAGGTACGACGCCGC
CGTCGCAGCCGCTGAACAACGCGACAGCGATGGCAAGGTGGCGTTGCCGT
CGCGAGTTGTCGGGATCTGCGTGGGCGAGGGCGAAGCGATGCGAACCCTC
CGAGGGGCGGACGGGGTCGTGTGCGTCGGGTGGAAGGCCGGGGAGGAGCT
GGCGCGCGTGATCGCGTCGTGCGACATCATGGTGGCCCCGAGCGAGGTGC
GGCGATACATGACACGTTCGAGGATCTCTCCATCGTACCCATCCTTACTC
TTTTCGAGCGGTTCTTCTGCAACCGGCCGAAAAAAAAAAAAACGATGTTG
CTGTTCTCCGTGTCCCGCGTGCGCCGGATGATGCCACTGAACTGGCTGCA
TGATGGTTTGGTGCGTACCGTGCTTGATTCGAGAAACAGCTCGGCTCACG
AAGGCTCTTTTTCTCTCCCTGTTCTTCTCCCTCGCCACGTTTGACGCTCC
TGTCTGACACGCGCGCTGACTACTACTGTGCCATCGCTTTGCTATTCGCG
TGACAGCAGTGTGTGTGCCGCGTGCAATCTCGAAAACAACAACCTCACGC
AGATCGAGACGTTCGGGCGGGTGACCCTCGAGGCCATGTCCTGCGGCCTG
CCGTGCGTCGTCAACCGGGAGTGCGGAGACCACCTCGTTCAGGTGGGTTG
GTTTTTGTTTGCGGTCTTGATCTTCGGGACACCAATGCAATATATATAGC
TACATATCTACGTAATTTCAATTTTTGCGCACATACGGAGATGCCTTGAA
ACAGGGGGGGCCGCGCCGTGCCTGCATGCTGTCATCTTTGTTTGTCCCTT
TTATTTGTTCCTGTTTATCAAGGAGAATGGAATTTTTTTTTCAAGAGAAT
ACAAGTTTTTTTGTCAAGAGCTCGTTATCACGAGGGAATGGGGTGGTGGT
GCTTTTCTGCTTAAATTTATTTTCATGTGTGAGTCCTCTCTCGTGTTTTC
TGTAGCATGTGTCTCATGAGCATGCACCGTCGTGTAGACGCCCCTTTTCG
TTCCACAGCGCCGATCAGCATCACACCCGCTTACGTTTTTCTCTGTCGCC
CGCCTGAGCCATCATTCGTCCTCCCAATGTTTCCCCCTTTGCACAGGATG
GGTCGAACGGCTTTTGCGTTCCTTCCGGGGATGAAGACGGCTACGTGGAG
GGCTTGAGGAAGCTCGTCCAGGACAAGAACCTGAGGAACAAGGTGATCCC
CAAAACTTTATTGTTGTTGCCGTTTCGCTTCAAGCGAGGGTGCAACGAAG
CCCAAGCACCTGCTGTGCAAGTATCTGTGGGAACAACACGCTGTCGTTGT
CGAATTTTACCCCGCTACTCTCTTGGCTCCTGTCTTTTGCGTGCTTCAAT
ACATACATGCAGATAGGTGTTTGTTTCGAGATTCCGACCTCAAAAAATTA
TGTCCGCGTCACTACCATGTTGTCGGTGTCTCGAAATGCACACGCCGGAA
CACGCAGGTCCTGCGCATTGATTGGGCTATTCACGCAAACAAGCTCTGCG
CACAGACAGGCCGCTACGGAGACCAAAACCTTGCACAACAAACGAAAAAT
ACAATTGGGGGGTATGTATTTCATTTGATTAATTGTTTTGTGGGGAAAGG
GCACTATATTTATTTGCGATTTTTTTCATAGTTCCTTGGTCTTTGGGCAG
GACATTCGCGCAATAAACACTGATCAACTGCCCCCCCTTCTTTTCTTGCT
GCCTTTCGCCCTCGTAACGACTTGGCGTGTCGCGCAGATGAGCGCGACCG
GCAGGCAGATAGCGCTTGGCTACGGGACGACCCAGCTGTACGACGGGATG
CTGGATATTTACAGGTACTGCCGCCGCTGTAGGTGCATACCATGGACGGA
ACAAGAACCAGAATACCCGCGGGCGGAAGTGAAAACTGTCAATCAAGAAA
ACCTTAACCTTTGTCCCGTGTTCCCGGTGGCATCTGTTTGTCGGACGTGG
CTTGCCTAGTAACTCTCGTCCCTTCCCGAATTTCGTCGTGCGTTTTGTCT
TTTTGCGTCCGTCCGTCAGGTCGTGCCGCGAGACACAGAACAAGACGTTC
AGGGCCCGCGTGGCGAAGAAGAGGGGTTTGCCCTTCTGGGAGGCGTTCGG
GCTGCTGGTAAGTCTTCTTTCTGTGCCTTGGACACATATATCAACAACCT
GTTTCGTAGTTTTAATATTTTTTTTCCGCGAACCTTGCTTACTCTCCGAA
ACGCACGCCCCCCACCCCCCTCCCATTCTTCTTCTTCTTCATCCTTGCCG
TCCTCTCGAGGATGCGTGGCCAATGTTGTGACAACTACAGTACAGTAAGA
AGGCACGCCAAACATGAGTGAGTACGCGCCCCCCTTATCCTCTCTGCCCA
TCATTTCCCAGCCCTCTTCCAGTAGCCACGAAACATGAGCACCTCACCGC
GCCGTGTAACTGACCGCTCTCGCGTGGACATGATATTTTGGTGTGGCACA
CGCCACGTGAATCGACGCGTCAATCAAGTGATCAGTACGGACAGATGGAG
GTGTGAATGAAGACAACAAAACAATAACAACAACAAGACGTCAAACACGT
TCGCGTATCAGTCACAACTTACGTCTCCCCCCGCCCTGCCCCCGAACGCC
TTCTCTTTTCGACGCTGAAACGCCCGCTGGGCGGAACCGAACCCGTCACA
ATTCGCTGCGCCTCCTCCTCAGATCTACTACGTGTTCGAGGCGGCCAAGA
TGATGACCGCCGCGGTGGCCTTCTTCACGCAGGGCAGGGACTCGGAGGTG
GTGCGCCTCTCCGTTCGGGCTTTCCGGAGCCACCTCGCGCTGCTCGGCCA
GCTGCTGTTCGGACTGAGCTGCTCCTCCTCCTCCTCCTCCTCCGCTCCTC
CTACTCTCCGCTCTGCCTCCTCGTCGTCTTCCCTCCAACTCACCCCCCCG
CCGTCTACAAGGAAGACGTCAAGGCCTTCTCCTTCTTCTTCTTCTTCTCG
CCGGTCGTCATCGTCTCACAGGTCCCCCTCCTCCGCGATGATGCCAAGAT
CGTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGGTTT
TCGTCCTCTCGCCCCGGCTCCCCGGCGATGATGCCGAGATCGGCCTCTTT
TTCGGGTGTTGTTGTTGTGCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9748:1298..4469-

>mRNA_Ecto-sp9_F_contig9748.17847.1 ID=mRNA_Ecto-sp9_F_contig9748.17847.1|Name=mRNA_Ecto-sp9_F_contig9748.17847.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2094bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9748:1298..4469- (Ectocarpus species9 EcSCA_722f female)
CAGGCCGTGCAACAAGTCCAACGCGAGGCGAGGGAGAGGTACGACGCCGC
CGTCGCAGCCGCTGAACAACGCGACAGCGATGGCAAGGTGGCGTTGCCGT
CGCGAGTTGTCGGGATCTGCGTGGGCGAGGGCGAAGCGATGCGAACCCTC
CGAGGGGCGGACGGGGTCGTGTGCGTCGGGTGGAAGGCCGGGGAGGAGCT
GGCGCGCGTGATCGCGTCGTGCGACATCATGGTGGCCCCGAGCGAGCAGG
CCGTGCAACAAGTCCAACGCGAGGCGAGGGAGAGGTACGACGCCGCCGTC
GCAGCCGCTGAACAACGCGACAGCGATGGCAAGGTGGCGTTGCCGTCGCG
AGTTGTCGGGATCTGCGTGGGCGAGGGCGAAGCGATGCGAACCCTCCGAG
GGGCGGACGGGGTCGTGTGCGTCGGGTGGAAGGCCGGGGAGGAGCTGGCG
CGCGTGATCGCGTCGTGCGACATCATGGTGGCCCCGAGCGAGATCGAGAC
GTTCGGGCGGGTGACCCTCGAGGCCATGTCCTGCGGCCTGCCGTGCGTCG
TCAACCGGGAGTGCGGAGACCACCTCGTTCAGATCGAGACGTTCGGGCGG
GTGACCCTCGAGGCCATGTCCTGCGGCCTGCCGTGCGTCGTCAACCGGGA
GTGCGGAGACCACCTCGTTCAGGATGGGTCGAACGGCTTTTGCGTTCCTT
CCGGGGATGAAGACGGCTACGTGGAGGGCTTGAGGAAGCTCGTCCAGGAC
AAGAACCTGAGGAACAAGGATGGGTCGAACGGCTTTTGCGTTCCTTCCGG
GGATGAAGACGGCTACGTGGAGGGCTTGAGGAAGCTCGTCCAGGACAAGA
ACCTGAGGAACAAGATGAGCGCGACCGGCAGGCAGATAGCGCTTGGCTAC
GGGACGACCCAGCTGTACGACGGGATGCTGGATATTTACAGATGAGCGCG
ACCGGCAGGCAGATAGCGCTTGGCTACGGGACGACCCAGCTGTACGACGG
GATGCTGGATATTTACAGGTCGTGCCGCGAGACACAGAACAAGACGTTCA
GGGCCCGCGTGGCGAAGAAGAGGGGTTTGCCCTTCTGGGAGGCGTTCGGG
CTGCTGGTCGTGCCGCGAGACACAGAACAAGACGTTCAGGGCCCGCGTGG
CGAAGAAGAGGGGTTTGCCCTTCTGGGAGGCGTTCGGGCTGCTGATCTAC
TACGTGTTCGAGGCGGCCAAGATGATGACCGCCGCGGTGGCCTTCTTCAC
GCAGGGCAGGGACTCGGAGGTGGTGCGCCTCTCCGTTCGGGCTTTCCGGA
GCCACCTCGCGCTGCTCGGCCAGCTGCTGTTCGGACTGAGCTGCTCCTCC
TCCTCCTCCTCCTCCGCTCCTCCTACTCTCCGCTCTGCCTCCTCGTCGTC
TTCCCTCCAACTCACCCCCCCGCCGTCTACAAGGAAGACGTCAAGGCCTT
CTCCTTCTTCTTCTTCTTCTCGCCGGTCGTCATCGTCTCACAGGTCCCCC
TCCTCCGCGATGATGCCAAGATCGTCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCGCCCGGTTTTCGTCCTCTCGCCCCGGCTCCCCGGCGA
TGATGCCGAGATCGGCCTCTTTTTCGGGTGTTGTTGTTGTGCCCATCTAC
TACGTGTTCGAGGCGGCCAAGATGATGACCGCCGCGGTGGCCTTCTTCAC
GCAGGGCAGGGACTCGGAGGTGGTGCGCCTCTCCGTTCGGGCTTTCCGGA
GCCACCTCGCGCTGCTCGGCCAGCTGCTGTTCGGACTGAGCTGCTCCTCC
TCCTCCTCCTCCTCCGCTCCTCCTACTCTCCGCTCTGCCTCCTCGTCGTC
TTCCCTCCAACTCACCCCCCCGCCGTCTACAAGGAAGACGTCAAGGCCTT
CTCCTTCTTCTTCTTCTTCTCGCCGGTCGTCATCGTCTCACAGGTCCCCC
TCCTCCGCGATGATGCCAAGATCGTCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCGCCCGGTTTTCGTCCTCTCGCCCCGGCTCCCCGGCGA
TGATGCCGAGATCGGCCTCTTTTTCGGGTGTTGTTGTTGTGCCC
back to top