mRNA_Ecto-sp9_F_contig9744.17845.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9744.17845.1
Unique NamemRNA_Ecto-sp9_F_contig9744.17845.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: Hsp90 (chaperone protein kinase-targeting subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYI3_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.800e-41
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    7 QERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEE 225
            +ERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEE
Sbjct:  321 EERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEE 393
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: CDC37 (n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8D3D5_MYTCO)

HSP 1 Score: 92.4 bits (228), Expect = 1.580e-21
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVED---EEYDDXXE 243
            + Q+R+GPGGLDP+EVF +LP+ ++  FD+KD  +LQ+ + E+  EE  YH+KR VDSGLWVPG G  + V D   EEYD+  E
Sbjct:   84 ERQKRLGPGGLDPVEVFESLPQILKDCFDKKDIALLQKVVAEMPQEEASYHIKRCVDSGLWVPGGGDQSTVGDDEGEEYDEINE 167
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: Hsp90 (co-chaperone Cdc37 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1PV92_CRAGI)

HSP 1 Score: 89.7 bits (221), Expect = 2.540e-21
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEE 225
            + Q+R+GPGGLDP+EVF +LPE +Q  F+ KD   LQ+A+ EL +EE +YHMKR VDSGLWVP A      E +E
Sbjct:   34 ERQKRLGPGGLDPVEVFESLPEVLQKCFESKDIASLQKAITELPEEEARYHMKRCVDSGLWVPEANKGQETEGKE 108
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: hsp90 (co-chaperone Cdc37-like isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI00193A4865)

HSP 1 Score: 94.0 bits (232), Expect = 6.570e-21
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGS 204
            + ++R+GPGGLDP EVF TLP++MQ  F+++D PMLQ+ +  L  E+ KYHMKR VDSGLWVPG GG+
Sbjct:  293 EREKRIGPGGLDPQEVFETLPKEMQDCFEKRDIPMLQKIIASLEPEQAKYHMKRCVDSGLWVPGGGGA 360
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: hsp90 (co-chaperone Cdc37-like n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEDD9F4)

HSP 1 Score: 89.7 bits (221), Expect = 1.150e-20
Identity = 43/83 (51.81%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEEYDDXXEEE 249
            + ++R+GPGGLDP+EV+ TLP++MQ  FD KD  MLQ+A+ ++   E KYHMKR +DSGLWVP +      E EE  +  EEE
Sbjct:   90 EKKKRLGPGGLDPVEVYDTLPQEMQKCFDDKDIQMLQDAISKMDPTEAKYHMKRCIDSGLWVPNSQPDDDREKEEEKEVKEEE 172
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: Cell (division cycle 37 homolog (S. cerevisiae) n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665SXZ1_ECHNA)

HSP 1 Score: 90.1 bits (222), Expect = 3.170e-20
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAG 198
            + Q+R+GPGGLDPLEV+ +LP+++Q +FD+K+  MLQEA+ +L  EE KYH+KR VDSGLWVP +G
Sbjct:  178 EKQKRLGPGGLDPLEVYESLPKEIQRSFDEKNIQMLQEAISKLHPEEGKYHLKRCVDSGLWVPDSG 243
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: Hsp90 (co-chaperone Cdc37 n=3 Tax=Cyprinidae TaxID=7953 RepID=A0A498MDY1_LABRO)

HSP 1 Score: 90.9 bits (224), Expect = 5.550e-20
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEEYDDXXEE 246
            + Q+RMGPGGLDP+EV+ TLP +MQ  FD+KD  MLQ+A+ ++   E KYHMKR +DSGLWVP A       DEE D   EE
Sbjct:  244 ERQKRMGPGGLDPVEVYETLPSEMQKCFDEKDIQMLQDAISKMDPTEAKYHMKRCIDSGLWVPNARA-----DEEGDKDKEE 320
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: Hsp90 (co-chaperone Cdc37 n=13 Tax=Cyprinoidei TaxID=30727 RepID=A0A6P6J6Y4_CARAU)

HSP 1 Score: 91.3 bits (225), Expect = 5.860e-20
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEEYDDXXEEE 249
            + Q+R+GPGGLDP+EV+ TLP +MQ  FD KD  MLQ+A+ ++   E KYHMKR +DSGLWVP A      + EE D+   EE
Sbjct:  284 EKQKRLGPGGLDPVEVYETLPPEMQKCFDDKDIQMLQDAISKMDPTEAKYHMKRCIDSGLWVPNARADEEGDKEEGDEPQYEE 366
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: CDC37_C (domain-containing protein n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BDU4_EURMA)

HSP 1 Score: 86.7 bits (213), Expect = 7.900e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVP 189
            + Q+R+GPGGLDP EVF +LPE +Q  F+ +DT +LQE +L+L  E+ KYHMKR VDSGLW+P
Sbjct:   57 ERQKRIGPGGLDPQEVFESLPECLQKCFESRDTKLLQETILKLDPEDAKYHMKRCVDSGLWIP 119
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BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Match: CDC37 (protein (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A1L0W4_HUMAN)

HSP 1 Score: 85.5 bits (210), Expect = 8.120e-20
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 DSQERMGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRVVDSGLWVPGAGGSTRVEDEE 225
            + ++R+GPGGLDP+EV+ +LPE++Q  FD KD  MLQ+A+ ++   + KYHM+R +DSGLWVP +  S   E EE
Sbjct:   14 ERKKRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPNSKASEAKEGEE 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9744.17845.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hsp901.800e-4198.63chaperone protein kinase-targeting subunit n=2 Tax... [more]
CDC371.580e-2152.38n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8D... [more]
Hsp902.540e-2156.00co-chaperone Cdc37 n=1 Tax=Crassostrea gigas TaxID... [more]
hsp906.570e-2160.29co-chaperone Cdc37-like isoform X1 n=2 Tax=Styela ... [more]
hsp901.150e-2051.81co-chaperone Cdc37-like n=1 Tax=Tachysurus fulvidr... [more]
Cell3.170e-2060.61division cycle 37 homolog (S. cerevisiae) n=1 Tax=... [more]
Hsp905.550e-2056.10co-chaperone Cdc37 n=3 Tax=Cyprinidae TaxID=7953 R... [more]
Hsp905.860e-2053.01co-chaperone Cdc37 n=13 Tax=Cyprinoidei TaxID=3072... [more]
CDC37_C7.900e-2060.32domain-containing protein n=1 Tax=Euroglyphus mayn... [more]
CDC378.120e-2050.67protein (Fragment) n=1 Tax=Homo sapiens TaxID=9606... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9744contigEcto-sp9_F_contig9744:4256..4968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.2e-32
Seed eggNOG ortholog2880.D7FYI3
Preferred nameCDC37
KEGG koko:K09554
KEGG Pathwayko04151,map04151
GOsGO:0000079,GO:0000161,GO:0000165,GO:0000226,GO:0000793,GO:0001726,GO:0001932,GO:0001934,GO:0001959,GO:0002576,GO:0002682,GO:0003674,GO:0003824,GO:0004672,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006457,GO:0006464,GO:0006468,GO:0006605,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008022,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010468,GO:0010506,GO:0010508,GO:0010562,GO:0010604,GO:0010608,GO:0010638,GO:0010646,GO:0010821,GO:0010822,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018108,GO:0018193,GO:0018212,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0030141,GO:0030234,GO:0030295,GO:0030296,GO:0030474,GO:0031023,GO:0031072,GO:0031089,GO:0031098,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031435,GO:0031647,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032268,GO:0032270,GO:0032587,GO:0032872,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0033674,GO:0034613,GO:0034774,GO:0035556,GO:0035690,GO:0036211,GO:0038127,GO:0038128,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042827,GO:0042886,GO:0042995,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043412,GO:0043422,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045055,GO:0045088,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0050730,GO:0050731,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051300,GO:0051338,GO:0051347,GO:0051403,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051879,GO:0060205,GO:0060255,GO:0060330,GO:0060334,GO:0060338,GO:0060759,GO:0061077,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070727,GO:0070887,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071944,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0097110,GO:0097708,GO:0098590,GO:0098772,GO:0098779,GO:0098780,GO:0099503,GO:0101031,GO:0120025,GO:0120038,GO:0140096,GO:1901524,GO:1901526,GO:1901564,GO:1902531,GO:1903146,GO:1903599,GO:1904029,GO:1904923,GO:1904925,GO:1990565
EggNOG free text desc.chaperone binding
EggNOG OGsKOG2260@1,KOG2260@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9744.17845.1prot_Ecto-sp9_F_contig9744.17845.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9744 4256..4953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.3048658-CDS-Ecto-sp9_F_contig9744:4255..43581622931065.3048658-CDS-Ecto-sp9_F_contig9744:4255..4358Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9744 4256..4358 -
1692279016.3564873-CDS-Ecto-sp9_F_contig9744:4255..43581692279016.3564873-CDS-Ecto-sp9_F_contig9744:4255..4358Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9744 4256..4358 -
1622931065.3333886-CDS-Ecto-sp9_F_contig9744:4822..49531622931065.3333886-CDS-Ecto-sp9_F_contig9744:4822..4953Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9744 4823..4953 -
1692279016.368852-CDS-Ecto-sp9_F_contig9744:4822..49531692279016.368852-CDS-Ecto-sp9_F_contig9744:4822..4953Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9744 4823..4953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.3506775-UTR-Ecto-sp9_F_contig9744:4953..49681622931065.3506775-UTR-Ecto-sp9_F_contig9744:4953..4968Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9744 4954..4968 -
1692279016.3794527-UTR-Ecto-sp9_F_contig9744:4953..49681692279016.3794527-UTR-Ecto-sp9_F_contig9744:4953..4968Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9744 4954..4968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9744.17845.1

>prot_Ecto-sp9_F_contig9744.17845.1 ID=prot_Ecto-sp9_F_contig9744.17845.1|Name=mRNA_Ecto-sp9_F_contig9744.17845.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=78bp
MGPGGLDPLEVFPTLPEKMQIAFDQKDTPMLQEALLELTDEERKYHMKRV
VDSGLWVPGAGGSTRVEDEEYDDDDEEE
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mRNA from alignment at Ecto-sp9_F_contig9744:4256..4968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9744.17845.1 ID=mRNA_Ecto-sp9_F_contig9744.17845.1|Name=mRNA_Ecto-sp9_F_contig9744.17845.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=713bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9744:4256..4968- (Ectocarpus species9 EcSCA_722f female)
GATTCGCAGGAGCGCATGGGTCCCGGCGGGCTAGACCCCTTGGAAGTGTT
CCCCACCCTGCCGGAGAAGATGCAGATCGCCTTCGACCAGAAGGATACCC
CGATGCTCCAGGAGGCGCTCTTGGAATTGACGGACGAGGAGCGAAAGTGA
GAGCCACCATGATAACTTGGGCCCGCGATGAAAACTACACAATATTGTGT
CTGTAGGATTGGCGGACGAGGAGCAAAAAGCGAGATACTTGCATGTTGTG
GTTGCTGACGAAGTTGCTTGGTTTAGCTCGACCAAACGCGGTCGTGCTCT
CTCACGCTGTGTTGCGAACGCTTTCTGTGCGTTACCCCGGCTACTGTATT
GTTTTGCGTCCCGAAAGAACGGCTTCCCCTTCACGCTATTCTGTGGTAGC
TCTTGCTCCTCAGTTGCCCCCAGGCCCCCCAGATGACAGTACCCATGAAC
TAGTCACGGAGTCCTTTGAGTTATTTCCCCGCGGACCCCCGATGTCGCCA
AAAGTACAGCACCTATGGTACAATTTTTCTCTCATCTATCACCTGTACGG
ACGGTTCTCACCTCGCCCCCTTTCGCCCACGCGACGAAACACCTTCTTTC
TCCCCGAAAGATACCACATGAAGCGCGTCGTGGACTCCGGCCTGTGGGTG
CCCGGGGCCGGAGGGAGCACGAGGGTCGAAGACGAAGAGTATGACGACGA
CGACGAGGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9744:4256..4968-

>mRNA_Ecto-sp9_F_contig9744.17845.1 ID=mRNA_Ecto-sp9_F_contig9744.17845.1|Name=mRNA_Ecto-sp9_F_contig9744.17845.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9744:4256..4968- (Ectocarpus species9 EcSCA_722f female)
ATGGGTCCCGGCGGGCTAGACCCCTTGGAAGTGTTCCCCACCCTGCCGGA
GAAGATGCAGATCGCCTTCGACCAGAAGGATACCCCGATGCTCCAGGAGG
CGCTCTTGGAATTGACGGACGAGGAGCGAAAATGGGTCCCGGCGGGCTAG
ACCCCTTGGAAGTGTTCCCCACCCTGCCGGAGAAGATGCAGATCGCCTTC
GACCAGAAGGATACCCCGATGCTCCAGGAGGCGCTCTTGGAATTGACGGA
CGAGGAGCGAAAATACCACATGAAGCGCGTCGTGGACTCCGGCCTGTGGG
TGCCCGGGGCCGGAGGGAGCACGAGGGTCGAAGACGAAGAGTATGACGAC
GACGACGAGGAGGAGATACCACATGAAGCGCGTCGTGGACTCCGGCCTGT
GGGTGCCCGGGGCCGGAGGGAGCACGAGGGTCGAAGACGAAGAGTATGAC
GACGACGACGAGGAGGAG
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