mRNA_Ecto-sp9_F_contig9744.17844.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9744.17844.1
Unique NamemRNA_Ecto-sp9_F_contig9744.17844.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9744.17844.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9744contigEcto-sp9_F_contig9744:1374..1814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.225832-UTR-Ecto-sp9_F_contig9744:1373..15051622931065.225832-UTR-Ecto-sp9_F_contig9744:1373..1505Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9744 1374..1505 +
1692279016.3075924-UTR-Ecto-sp9_F_contig9744:1373..15051692279016.3075924-UTR-Ecto-sp9_F_contig9744:1373..1505Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9744 1374..1505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931065.2472653-CDS-Ecto-sp9_F_contig9744:1505..18141622931065.2472653-CDS-Ecto-sp9_F_contig9744:1505..1814Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9744 1506..1814 +
1692279016.317745-CDS-Ecto-sp9_F_contig9744:1505..18141692279016.317745-CDS-Ecto-sp9_F_contig9744:1505..1814Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9744 1506..1814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9744.17844.1prot_Ecto-sp9_F_contig9744.17844.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9744 1506..1814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9744.17844.1

>prot_Ecto-sp9_F_contig9744.17844.1 ID=prot_Ecto-sp9_F_contig9744.17844.1|Name=mRNA_Ecto-sp9_F_contig9744.17844.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
MLFGKVAGSLGASIVSSVLPLGRILQVPMGDSPPLPPPCLQNKWPGITSL
QGDSLVLDDMSILDEVLLPTTRLPLSLWVYVISRRLQQSLPGFDTSSTMA
TDT
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mRNA from alignment at Ecto-sp9_F_contig9744:1374..1814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9744.17844.1 ID=mRNA_Ecto-sp9_F_contig9744.17844.1|Name=mRNA_Ecto-sp9_F_contig9744.17844.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=441bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9744:1374..1814+ (Ectocarpus species9 EcSCA_722f female)
GTTTTCCGTGCCCGCTCTTGTTGTACTGCCCGCCTGTAGTCCAACGTTAG
TATTCAACGCTACAGGTAATTTACGAGTGTATCGAGGTCGGGAAATTTGG
TTTCGGACATGCTTGCCTTGTTTTGGAAGTAGATGCTGTTTGGAAAAGTG
GCCGGTTCTCTCGGCGCATCTATTGTATCAAGCGTGCTCCCTCTCGGACG
GATTCTTCAAGTGCCCATGGGAGACTCCCCCCCCCTCCCACCTCCATGTC
TCCAGAATAAATGGCCAGGGATAACGTCCTTACAGGGGGATTCGCTTGTC
CTTGATGACATGTCTATCCTGGATGAAGTTTTGCTGCCCACCACACGCCT
TCCCCTTTCTTTGTGGGTGTACGTCATTTCACGACGTCTCCAACAGTCGT
TGCCAGGGTTTGATACATCCAGCACAATGGCTACCGATACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9744:1374..1814+

>mRNA_Ecto-sp9_F_contig9744.17844.1 ID=mRNA_Ecto-sp9_F_contig9744.17844.1|Name=mRNA_Ecto-sp9_F_contig9744.17844.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9744:1374..1814+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGTTTGGAAAAGTGGCCGGTTCTCTCGGCGCATCTATTGTATCAAG
CGTGCTCCCTCTCGGACGGATTCTTCAAGTGCCCATGGGAGACTCCCCCC
CCCTCCCACCTCCATGTCTCCAGAATAAATGGCCAGGGATAACGTCCTTA
CAGGGGGATTCGCTTGTCCTTGATGACATGTCTATCCTGGATGAAGTTTT
GCTGCCCACCACACGCCTTCCCCTTTCTTTGTGGGTGTACGTCATTTCAC
GACGTCTCCAACAGTCGTTGCCAGGGTTTGATACATCCAGCACAATGGCT
ACCGATACGATGCTGTTTGGAAAAGTGGCCGGTTCTCTCGGCGCATCTAT
TGTATCAAGCGTGCTCCCTCTCGGACGGATTCTTCAAGTGCCCATGGGAG
ACTCCCCCCCCCTCCCACCTCCATGTCTCCAGAATAAATGGCCAGGGATA
ACGTCCTTACAGGGGGATTCGCTTGTCCTTGATGACATGTCTATCCTGGA
TGAAGTTTTGCTGCCCACCACACGCCTTCCCCTTTCTTTGTGGGTGTACG
TCATTTCACGACGTCTCCAACAGTCGTTGCCAGGGTTTGATACATCCAGC
ACAATGGCTACCGATACG
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