mRNA_Ecto-sp9_F_contig9732.17834.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9732.17834.1
Unique NamemRNA_Ecto-sp9_F_contig9732.17834.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9732.17834.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 7.020e-82
Identity = 154/185 (83.24%), Postives = 157/185 (84.86%), Query Frame = 3 
Query:   60 MLCCTQRIKPGYGGRMLRDAREVFREGRHTSNARPRAAPFRSASTMQQCAAASGTESTVAVWSCVDPWTGRPRSSXXXXXXXXXXXXXXXXXXXXXXXXKVGG------GLGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFQSCLGETDPLKVQMMVVDATNHLEAMQGSTRGAGSG 596
            MLCCT+RIKPG GGRMLRD+ E FREG HT NARPR APFRSASTMQQCAAA GTEST AVWSCVDPWTGRPR      XXXXXXXXXXXXXXXXX  X           LGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQF+SCLGETDPLKVQMMV DATNHLEAMQGSTRGAGSG
Sbjct:    1 MLCCTKRIKPGCGGRMLRDSTEAFREGSHTKNARPRVAPFRSASTMQQCAAACGTESTAAVWSCVDPWTGRPRPRSSSSXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSG 185
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BLAST of mRNA_Ecto-sp9_F_contig9732.17834.1 vs.
Match: Complex1_LYR_dom (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.700e-35
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 3 
Query:  390 MHRARVLELYRGILKRARALEDKDVADEARRQFQSCLGETDPLKVQMMVVDATNHLEAMQGSTRGAGSG 596
            MHRARVLELYRGILKRARALEDKDVADEAR+QF+SCLGETDPLKVQMMV DATNHLEAMQGSTRGAGSG
Sbjct:    1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSG 69
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BLAST of mRNA_Ecto-sp9_F_contig9732.17834.1 vs.
Match: LYR (motif-containing protein 2 n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AAP9_CYCLU)

HSP 1 Score: 53.9 bits (128), Expect = 6.340e-6
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 3 
Query:  372 LGLKEFMHRARVLELYRGILKRARALED----KDVADEARRQFQSCLGETDPLKVQMMVVDATNHLEAMQGSTRGAGS 593
            L LK+F+ R RVL +YR +++  R + D    K ++D AR +F+     TD   ++MM+  A NHLE +QGS   AGS
Sbjct:   42 LSLKQFLQRQRVLGIYRNMIRTIRKVPDEADRKYLSDWARDEFKRNKSATDQDAIRMMITQANNHLEELQGSLALAGS 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9732.17834.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Complex1_LYR_dom7.020e-8283.24domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Complex1_LYR_dom2.700e-3595.65domain-containing protein n=1 Tax=Ectocarpus silic... [more]
LYR6.340e-641.03motif-containing protein 2 n=2 Tax=Cyclopterus lum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9732contigEcto-sp9_F_contig9732:13..2764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
Exons3
Model size670
Cds size609
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9732.17834.1prot_Ecto-sp9_F_contig9732.17834.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9732 13..2705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.0141985-CDS-Ecto-sp9_F_contig9732:12..2461622931064.0141985-CDS-Ecto-sp9_F_contig9732:12..246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9732 13..246 -
1692279015.6817873-CDS-Ecto-sp9_F_contig9732:12..2461692279015.6817873-CDS-Ecto-sp9_F_contig9732:12..246Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9732 13..246 -
1622931064.0459747-CDS-Ecto-sp9_F_contig9732:1613..19571622931064.0459747-CDS-Ecto-sp9_F_contig9732:1613..1957Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9732 1614..1957 -
1692279015.6931612-CDS-Ecto-sp9_F_contig9732:1613..19571692279015.6931612-CDS-Ecto-sp9_F_contig9732:1613..1957Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9732 1614..1957 -
1622931064.0686438-CDS-Ecto-sp9_F_contig9732:2674..27051622931064.0686438-CDS-Ecto-sp9_F_contig9732:2674..2705Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9732 2675..2705 -
1692279015.7050726-CDS-Ecto-sp9_F_contig9732:2674..27051692279015.7050726-CDS-Ecto-sp9_F_contig9732:2674..2705Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9732 2675..2705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.1008089-UTR-Ecto-sp9_F_contig9732:2705..27641622931064.1008089-UTR-Ecto-sp9_F_contig9732:2705..2764Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9732 2706..2764 -
1692279015.7169096-UTR-Ecto-sp9_F_contig9732:2705..27641692279015.7169096-UTR-Ecto-sp9_F_contig9732:2705..2764Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9732 2706..2764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9732.17834.1

>prot_Ecto-sp9_F_contig9732.17834.1 ID=prot_Ecto-sp9_F_contig9732.17834.1|Name=mRNA_Ecto-sp9_F_contig9732.17834.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=203bp
MLCCTQRIKPGYGGRMLRDAREVFREGRHTSNARPRAAPFRSASTMQQCA
AASGTESTVAVWSCVDPWTGRPRSSSSSSNRSSSSSSGSGGGGGGGGGGK
VGGGLGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFQSCLGET
DPLKVQMMVVDATNHLEAMQGSTRGAGSGGGGGATRGWIFTTRRTSGGGS
EGV
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mRNA from alignment at Ecto-sp9_F_contig9732:13..2764-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9732.17834.1 ID=mRNA_Ecto-sp9_F_contig9732.17834.1|Name=mRNA_Ecto-sp9_F_contig9732.17834.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2752bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9732:13..2764- (Ectocarpus species9 EcSCA_722f female)
CCCTTCCAACACAGCAGACAGGTGCATGTGCTCTCTTCCCCAGATATTCG
TGAGAGGAAATGCTGTGCTGCACCCAGCGAATAAAACCAGGTGTGGAGGC
GTGTCCTGCTTTGCATTTCGCGGAACAGCAAAGTGGCAAATACTTGAGCC
ATTTGTCGACAGAGGACGATTGACTGCTGTATGTAGCTCGGCGGTGGCAA
GGCCACGCAGATATTCAGACATGTAGAGACATCTGTAGCATCTTTGGGGG
GAGGGCAAGTTGGGTCGCACATTGCTTTTGCCATCGCCGGCTTAATTCCA
CCAATTTCGATGACAAAAAATAGAGATGATGCGCTCCTGTACTGCTGTAT
TTGTGGTGTTGTCGCGGACCGTACGACGCCGTTAGTGGGTTTAAGTATAA
AAGTTACTTCAGCAGGTAGATTTCAAAGGTACGTAGCAGTAGTGATTGCA
GTATATGTTATCCTCCGCGCAGAAAACTGATCTATTTTTACCTTGTTCTT
CGCGCTGTCTATTGCACGCTGCAGCATATGGATAAGCTTGGTAGAATGAC
TTGACGGCTAACAAAAAAGCGTATATGACTGACCCCTTCAAGTGACACTT
GGCTTTTTCATGTAAAGTGACACTTGGCTTTTTCATGTCCCACCCCTACA
GACACCTCTATACCACTTTTTTTCGAGAGGATTTCGGTTTATTTTTGCTT
AATTCTCCTTGACACACCCGCGATAGCCCAACAACTCCAAACGATGCATT
TTCCACCCTTGGAAACCCCTCGCGGGGCGCTGCGCCCTGTTGACCCCCCC
CCCCCAGGATATGGCGGCCGGATGCTGCGAGACGCTAGGGAAGTCTTCCG
AGAAGGGCGCCACACCAGCAACGCTAGACCAAGGGCGGCGCCCTTCCGCT
CGGCCTCGACGATGCAGCAGTGCGCTGCTGCTTCCGGCACCGAGTCAACG
GTAGCAGTGTGGAGTTGCGTCGACCCTTGGACTGGTCGACCGCGAAGCAG
CAGCAGCAGCAGCAACAGAAGCAGCAGCAGTAGTAGTGGCAGCGGTGGCG
GTGGCGGTGGCGGTGGTGGCGGGAAAGTGGGCGGGGGCCTCGGGCTGAAA
GAGTTCATGCACCGGGCCCGAGTGCTGGAGCTGTATCGCGGGATCTTGAA
GGTGGGAGAGAGAAATGAGAGGAAAGGGGTGGAGACAGAGATCACGCAAA
CCTGTTTTGGTATCCCTTTTCGGCGTGAGACTATTATTTGCTATCCTTTT
GTGGAGGCGATGCAGCCTAGGTGTTGGGTTATTGTATGGGGTAGGGCAAG
AGTTGTGATCGTGATGTGTGCGATGGATGAACACACAAATGCCACGCGCA
AGCGGCTGGATACCCCCCGAGTTCGTTGGTTGTCGCTATTGTACAAGTGG
TGTTTTTTTTCTCTCGCTGGCAGCTGGTGTTCCTTTCGACTCGTATTGGG
AATGCTTGGATCGCGCGTCGCTTTGGAATTATCGGTACAAAAGCTGCGGC
AACGTGCTGCCCTGATGCATTTGATCGGGGGCTGTCGGTACGTACCGCAC
GGGTGTAACCCTTTTGCAGGGAGGAACAATTGTTTTGGGCGGTAGCCTCT
TTCCCGGCGACCAGCGTTGGCCCCGCCGTGTGTTGGTAGGCCCGGCACCG
CCTTCAACCAAACGCGCAGCCAGAGCCTGTGGACAATTCCGGCTTTTTCT
ATCGCCTGCGCCTTCGCCGGACTGCTTGCTTTTGCGGTATCGCCTTCGCG
CGATTGATAAGTTTATGAAGGAATAGAACAGGGAGGGGGGACGCAGACCT
TTATCCCTAACCCTTAACCTAACCCAACTCACCCGATTGTATGCTTTACC
AAGAATGTTAACATAATACAAAGAACCGTGCGAAGGGTACTGGTCTTGTG
GGGCGGTGACACTCGTCAGGTTGACACTCGGCACACACCGAGTCTGTTTT
CTCAAGTTATGCGGCGCTCCTTTGTTTGCAAGCATTGATGCTTGATGCCT
TCCCCGGCAAATGGCACGCCCGCATCAACGTACTGTATCCACGCAGGGGG
GGGGTGTACTCATAGTCGTGCATGCCGCAGTCGTTAGACCATTGGCCTCG
CATCCCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAAGC
CGTGTAGGGGGTAGGTCTTAAAACATGAACACGTGACCTTAACCTAGACG
ACGACCTTGTCGTGGGTGCTTGAAAATTGAGCGGTATACAGCCTGCACCC
GTGACGTTTGGCCTTCGGTCCTCCATGACACCGTCAACGACCAATATGAG
ACGAATGCACTGGGTTGCGCACGCGACTGACCGACCTCTCTTTGCTCCTC
TGATGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCTTCGCGCG
TGCCACAAAACCGCTTTCATATTTGGGTTTTCTTTTTTGTCATTTTCCGT
GTGCGCCGCGCTGTTCACCGCGGACCGCCGCCGTCGGAAAACGCTGACGG
TTACATACTGCGCCACAGCGGGCCAGGGCCCTGGAGGACAAGGACGTGGC
CGACGAGGCGAGGAGACAGTTCCAGTCGTGCCTGGGAGAGACGGACCCCC
TCAAGGTCCAGATGATGGTGGTGGATGCCACGAACCACCTCGAGGCAATG
CAGGGCTCGACGCGGGGGGCGGGATCTGGGGGGGGGGGGGGGGCGACTCG
TGGCTGGATATTCACGACCCGGAGGACAAGCGGGGGAGGGTCGGAGGGGG
TT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9732:13..2764-

>mRNA_Ecto-sp9_F_contig9732.17834.1 ID=mRNA_Ecto-sp9_F_contig9732.17834.1|Name=mRNA_Ecto-sp9_F_contig9732.17834.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9732:13..2764- (Ectocarpus species9 EcSCA_722f female)
ATGCTGTGCTGCACCCAGCGAATAAAACCAGATGCTGTGCTGCACCCAGC
GAATAAAACCAGGATATGGCGGCCGGATGCTGCGAGACGCTAGGGAAGTC
TTCCGAGAAGGGCGCCACACCAGCAACGCTAGACCAAGGGCGGCGCCCTT
CCGCTCGGCCTCGACGATGCAGCAGTGCGCTGCTGCTTCCGGCACCGAGT
CAACGGTAGCAGTGTGGAGTTGCGTCGACCCTTGGACTGGTCGACCGCGA
AGCAGCAGCAGCAGCAGCAACAGAAGCAGCAGCAGTAGTAGTGGCAGCGG
TGGCGGTGGCGGTGGCGGTGGTGGCGGGAAAGTGGGCGGGGGCCTCGGGC
TGAAAGAGTTCATGCACCGGGCCCGAGTGCTGGAGCTGTATCGCGGGATC
TTGAAGGATATGGCGGCCGGATGCTGCGAGACGCTAGGGAAGTCTTCCGA
GAAGGGCGCCACACCAGCAACGCTAGACCAAGGGCGGCGCCCTTCCGCTC
GGCCTCGACGATGCAGCAGTGCGCTGCTGCTTCCGGCACCGAGTCAACGG
TAGCAGTGTGGAGTTGCGTCGACCCTTGGACTGGTCGACCGCGAAGCAGC
AGCAGCAGCAGCAACAGAAGCAGCAGCAGTAGTAGTGGCAGCGGTGGCGG
TGGCGGTGGCGGTGGTGGCGGGAAAGTGGGCGGGGGCCTCGGGCTGAAAG
AGTTCATGCACCGGGCCCGAGTGCTGGAGCTGTATCGCGGGATCTTGAAG
CGGGCCAGGGCCCTGGAGGACAAGGACGTGGCCGACGAGGCGAGGAGACA
GTTCCAGTCGTGCCTGGGAGAGACGGACCCCCTCAAGGTCCAGATGATGG
TGGTGGATGCCACGAACCACCTCGAGGCAATGCAGGGCTCGACGCGGGGG
GCGGGATCTGGGGGGGGGGGGGGGGCGACTCGTGGCTGGATATTCACGAC
CCGGAGGACAAGCGGGGGAGGGTCGGAGGGGGTTCGGGCCAGGGCCCTGG
AGGACAAGGACGTGGCCGACGAGGCGAGGAGACAGTTCCAGTCGTGCCTG
GGAGAGACGGACCCCCTCAAGGTCCAGATGATGGTGGTGGATGCCACGAA
CCACCTCGAGGCAATGCAGGGCTCGACGCGGGGGGCGGGATCTGGGGGGG
GGGGGGGGGCGACTCGTGGCTGGATATTCACGACCCGGAGGACAAGCGGG
GGAGGGTCGGAGGGGGTT
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