mRNA_Ecto-sp9_F_contig9725.17828.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig9725.17828.1
Unique Name	mRNA_Ecto-sp9_F_contig9725.17828.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.490e-28
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1

Query:    1 MDESYTHFGTQYGEECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEIVSETTPPTDDP 195
            MD SYTHFGTQYGEECWCTGSLGTTETSTACTY C GN GE CGGFDAL++YEI+SE  PPT  P
Sbjct:  388 MDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEA-PPTPAP 451

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BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: WSC (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.570e-27
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 1

Query:    1 MDESYTHFGTQYGEECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEIVSETT-PPTDDPT 198
             D+S THFGTQYGEECWCTGSLGTTETS+ACT  C GN  E CGGFDALS+YEIV++T+ PPT  PT
Sbjct:   89 QDDSNTHFGTQYGEECWCTGSLGTTETSSACTMDCAGNSAETCGGFDALSMYEIVADTSSPPTPAPT 155

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BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: WSC (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.590e-26
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 1

Query:    1 MDESYTHFGTQYGEECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEIVSETTPPTDDP 195
            MD SYTHFGTQYG ECWCTGSLG+TETSTACT  C GN  E CGGFDAL++YEIVSE  PPT  P
Sbjct:  163 MDASYTHFGTQYGNECWCTGSLGSTETSTACTMDCAGNTAETCGGFDALTLYEIVSEA-PPTPAP 226

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BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH26_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.000e-23
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1

Query:   43 ECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEIVSETTPPTDDPTP 201
            +CWCT SLGTTETSTACTY C GNPGE CGGFDALS+Y+IVS TTPPTDDPTP
Sbjct:    5 QCWCTASLGTTETSTACTYPCAGNPGETCGGFDALSLYKIVSVTTPPTDDPTP 57

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BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.030e-23
Identity = 44/49 (89.80%), Postives = 44/49 (89.80%), Query Frame = 1

Query:    1 MDESYTHFGTQYGEECWCTGSLGTTETSTACTYSCDGNPGEICGGFDAL 147
            MD SYTHFGTQYGEECWCTGSLGTTETSTACTY C GN GE CGGFDAL
Sbjct:  388 MDSSYTHFGTQYGEECWCTGSLGTTETSTACTYPCAGNAGETCGGFDAL 436

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.820e-18
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1

Query:   43 ECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEIVSETTPPTDDP 195
            +CWCTGSLGTTETSTACTY C GN GE CGGFDAL++YEI+SE  PPT  P
Sbjct:  387 QCWCTGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEA-PPTPAP 436

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1

Query:   43 ECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEIVSETTPPTDDPTP 201
            EC+CTGSLG T++STA +Y+C GN GE+CG   A++VYEI S  T PTDDPTP
Sbjct:  509 ECFCTGSLGATQSSTAYSYACAGNSGELCGRLYAMTVYEIGSVATSPTDDPTP 561

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.100e-13
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1

Query:   16 THFGTQYGEECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEI 162
            THFGTQYG EC+CT  LG +  ST CTY C GNP E CGGFD ++ Y I
Sbjct:  348 THFGTQYGNECFCTDVLGESAVSTDCTYDCIGNPDETCGGFDRITAYRI 396

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.240e-13
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 1

Query:   16 THFGTQYGEECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEI 162
            THFGTQYG EC+CT  L  +  ST CTY C GNP E CGGFD ++ Y I
Sbjct:  402 THFGTQYGNECFCTDVLRESAVSTGCTYECRGNPDETCGGFDMITAYRI 450

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 8.820e-9
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1

Query:    4 DESYTHFGTQYGEECWC-----TGSLGTTETSTACTYSCDGNPGEICGGFDALSVYEI 162
            D + THFGTQYGEECWC         G  +  + C + C GN  E CGGFD ++VY+I
Sbjct:   78 DGTNTHFGTQYGEECWCGIHPALARHGELDIDS-CDFPCAGNEEETCGGFDKMTVYDI 134

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9725.17828.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	2.490e-28	81.54	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
WSC	1.570e-27	74.63	domain containing protein n=1 Tax=Ectocarpus silic...	[more]
WSC	1.590e-26	76.92	domain containing protein n=1 Tax=Ectocarpus silic...	[more]
Uncharacterized	2.000e-23	84.91	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	2.030e-23	89.80	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
WSC	8.820e-18	76.47	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Uncharacterized	1.100e-13	64.15	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.100e-13	63.27	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.240e-13	61.22	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
WSC	8.820e-9	48.28	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9725	contig	Ecto-sp9_F_contig9725:3494..3935 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	69.7
Seed ortholog evalue	5.8e-10
Seed eggNOG ortholog	2880.D7FRS1
KEGG ko	ko:K22017
EggNOG free text desc.	Sushi, nidogen and EGF-like
EggNOG OGs	KOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
COG Functional cat.	KLT
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Hectar predicted targeting category	other localisation
Exons	2
Model size	201
Cds size	201
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931062.9216542-CDS-Ecto-sp9_F_contig9725:3493..3538	1622931062.9216542-CDS-Ecto-sp9_F_contig9725:3493..3538	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig9725 3494..3538 +
1692279015.3431501-CDS-Ecto-sp9_F_contig9725:3493..3538	1692279015.3431501-CDS-Ecto-sp9_F_contig9725:3493..3538	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig9725 3494..3538 +
1622931062.935706-CDS-Ecto-sp9_F_contig9725:3779..3935	1622931062.935706-CDS-Ecto-sp9_F_contig9725:3779..3935	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig9725 3780..3935 +
1692279015.3595724-CDS-Ecto-sp9_F_contig9725:3779..3935	1692279015.3595724-CDS-Ecto-sp9_F_contig9725:3779..3935	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig9725 3780..3935 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9725.17828.1	prot_Ecto-sp9_F_contig9725.17828.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig9725 3494..3935 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig9725:3494..3935+
coding sequence from alignment at Ecto-sp9_F_contig9725:3494..3935+

protein sequence of mRNA_Ecto-sp9_F_contig9725.17828.1

>prot_Ecto-sp9_F_contig9725.17828.1 ID=prot_Ecto-sp9_F_contig9725.17828.1|Name=mRNA_Ecto-sp9_F_contig9725.17828.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp
MDESYTHFGTQYGEECWCTGSLGTTETSTACTYSCDGNPGEICGGFDALS
VYEIVSETTPPTDDPTP

mRNA from alignment at Ecto-sp9_F_contig9725:3494..3935+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig9725.17828.1 ID=mRNA_Ecto-sp9_F_contig9725.17828.1|Name=mRNA_Ecto-sp9_F_contig9725.17828.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=442bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9725:3494..3935+ (Ectocarpus species9 EcSCA_722f female)
ATGGACGAATCGTACACCCACTTCGGCACCCAGTACGGGGAAGAGGTGGG
TGGTTTCGGCTACCGTACTTGTTGTGGCTTGTGATACTTGTGGTTCTGCT
CTTGTTGATGTGATGTCGTTGCCGTCTTTGTTGGTGCTGCTCCCGGTGAG
TGTCTTGTAGCCTTGCTCGTTTTGATTTGTGAAGAGAAGAGAGTACTCTG
GCACTCGACCGATCAGCCTCATATCGTCCGTGTCTGTTGCCCATGTGCCC
TCCTCTCCTCTCCGCAAACCCATGTCTCGTCCTCAGTGCTGGTGCACAGG
ATCGCTCGGGACAACCGAGACCTCCACCGCCTGCACCTACAGCTGCGATG
GAAACCCTGGGGAGATCTGCGGCGGCTTTGACGCGCTTTCCGTGTACGAG
ATCGTCTCGGAGACCACCCCTCCTACCGATGATCCTACCCCG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9725:3494..3935+

>mRNA_Ecto-sp9_F_contig9725.17828.1 ID=mRNA_Ecto-sp9_F_contig9725.17828.1|Name=mRNA_Ecto-sp9_F_contig9725.17828.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9725:3494..3935+ (Ectocarpus species9 EcSCA_722f female)
ATGGACGAATCGTACACCCACTTCGGCACCCAGTACGGGGAAGAGATGGA
CGAATCGTACACCCACTTCGGCACCCAGTACGGGGAAGAGTGCTGGTGCA
CAGGATCGCTCGGGACAACCGAGACCTCCACCGCCTGCACCTACAGCTGC
GATGGAAACCCTGGGGAGATCTGCGGCGGCTTTGACGCGCTTTCCGTGTA
CGAGATCGTCTCGGAGACCACCCCTCCTACCGATGATCCTACCCCGTGCT
GGTGCACAGGATCGCTCGGGACAACCGAGACCTCCACCGCCTGCACCTAC
AGCTGCGATGGAAACCCTGGGGAGATCTGCGGCGGCTTTGACGCGCTTTC
CGTGTACGAGATCGTCTCGGAGACCACCCCTCCTACCGATGATCCTACCC
CG