mRNA_Ecto-sp9_F_contig9718.17820.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI) HSP 1 Score: 281 bits (718), Expect = 5.450e-84 Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPK W
Sbjct: 1674 QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKGW 1817
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: FAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE) HSP 1 Score: 276 bits (705), Expect = 3.040e-82 Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
QLRVSAIRLMHIVM+TKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEP+KLQ LPDPK W
Sbjct: 754 QLRVSAIRLMHIVMMTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPEKLQGLPDPKGW 897
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ESV8_9STRA) HSP 1 Score: 121 bits (303), Expect = 2.780e-28 Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
QLR++AI+L+ AF+ + L +DAR R + +FFK LT + ++VD AQ AL V+ N++ +++S +PK+LLQ CLRPVL NL +KL++PLL+GL+RLL LLSN FNVTLG+KL +L+QW +P+++
Sbjct: 123 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 252
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418C387_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.050e-28 Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
QLR++AI+L+ AF+ + L +DAR R + +FFK LT + ++VD AQ AL V+ N++ +++S +PK+LLQ CLRPVL NL +KL++PLL+GL+RLL LLSN FNVTLG+KL +L+QW +P+++
Sbjct: 1647 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1776
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EAJ9_ASPOF) HSP 1 Score: 121 bits (303), Expect = 3.070e-28 Identity = 71/149 (47.65%), Postives = 96/149 (64.43%), Query Frame = 1
Query: 28 ITTALQLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
+TT +LR + I L+ M + ++T + + R++ IS+FFKSLT R ++V A+ L QVI + MPKDLLQS LRP+L NL H + L++PLLQGL+RLL LLSNWFNVTLG KL +L++W EP+KL KAW
Sbjct: 1194 VTTLNKLRTACIELLCTAMAWQD---LKTPIHSELRSKIISMFFKSLTCRTPEIVSVAKEGLRQVI-------QQQKMPKDLLQSSLRPILVNLAHTKSLNMPLLQGLARLLELLSNWFNVTLGVKLLDHLKKWLEPEKLAQTQ--KAW 1330
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DAI0_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.090e-28 Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
QLR++AI+L+ AF+ + L +DAR R + +FFK LT + ++VD AQ AL V+ N++ +++S +PK+LLQ CLRPVL NL +KL++PLL+GL+RLL LLSN FNVTLG+KL +L+QW +P+++
Sbjct: 1647 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1776
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BKN8_9STRA) HSP 1 Score: 121 bits (303), Expect = 3.090e-28 Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
QLR++AI+L+ AF+ + L +DAR R + +FFK LT + ++VD AQ AL V+ N++ +++S +PK+LLQ CLRPVL NL +KL++PLL+GL+RLL LLSN FNVTLG+KL +L+QW +P+++
Sbjct: 1654 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1783
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZWG2_SALSN) HSP 1 Score: 120 bits (302), Expect = 4.190e-28 Identity = 74/148 (50.00%), Postives = 94/148 (63.51%), Query Frame = 1
Query: 31 TTALQLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
T+ +LR + I L+ M A +T D R + IS+FFKSLTSR+ ++V A+ L QVI R MPK+LLQS LRP+L NL H + LS+PLLQGL+RLL LLSNWFNVTLG KL +L++W EP+KL KAW
Sbjct: 1353 TSLNKLRTACIELLCTAMAW---ADFKTQNHSDLRAKVISMFFKSLTSRSPEIVAVAKEGLRQVILQQR-------MPKELLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSNWFNVTLGGKLLEHLKKWLEPEKLALTQ--KAW 1488
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UM79_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.210e-28 Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
QLR++AI+L+ AF+ D L +D+R R + +FF+ LT + ++VD AQ AL V+ N++ +++S +PK+LLQ CLRPVL NL +KL++PLL+GLSRLL LLSN FNVTLG+KL +L+QW +P+++
Sbjct: 1665 QLRIAAIQLLR-------AAFVNDDTLNQHQDSRNRFVGVFFRFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLSRLLGLLSNCFNVTLGEKLLEHLKQWRDPERI 1794
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9L1_9STRA) HSP 1 Score: 120 bits (302), Expect = 4.210e-28 Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query: 43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
QLR++AI+L+ AF+ + L +DAR R + +FFK LT + ++VD AQ AL V+ N++ +++S +PK+LLQ CLRPVL NL +KL++PLL+GL+RLL LLSN FNVTLG+KL +L+QW +P+++
Sbjct: 1649 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGVFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1778 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9718.17820.1 >prot_Ecto-sp9_F_contig9718.17820.1 ID=prot_Ecto-sp9_F_contig9718.17820.1|Name=mRNA_Ecto-sp9_F_contig9718.17820.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=199bp YICAFLFAAITTALQLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISback to top mRNA from alignment at Ecto-sp9_F_contig9718:1769..3171+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9718.17820.1 ID=mRNA_Ecto-sp9_F_contig9718.17820.1|Name=mRNA_Ecto-sp9_F_contig9718.17820.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1403bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9718:1769..3171+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9718:1769..3171+ >mRNA_Ecto-sp9_F_contig9718.17820.1 ID=mRNA_Ecto-sp9_F_contig9718.17820.1|Name=mRNA_Ecto-sp9_F_contig9718.17820.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9718:1769..3171+ (Ectocarpus species9 EcSCA_722f female)back to top |