mRNA_Ecto-sp9_F_contig9718.17820.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9718.17820.1
Unique NamemRNA_Ecto-sp9_F_contig9718.17820.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 5.450e-84
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
            QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPK W
Sbjct: 1674 QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKGW 1817          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: FAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 3.040e-82
Identity = 140/144 (97.22%), Postives = 142/144 (98.61%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
            QLRVSAIRLMHIVM+TKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEP+KLQ LPDPK W
Sbjct:  754 QLRVSAIRLMHIVMMTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPEKLQGLPDPKGW 897          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ESV8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.780e-28
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
            QLR++AI+L+         AF+  + L   +DAR R + +FFK LT +  ++VD AQ AL  V+  N++ +++S +PK+LLQ CLRPVL NL   +KL++PLL+GL+RLL LLSN FNVTLG+KL  +L+QW +P+++
Sbjct:  123 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 252          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418C387_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.050e-28
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
            QLR++AI+L+         AF+  + L   +DAR R + +FFK LT +  ++VD AQ AL  V+  N++ +++S +PK+LLQ CLRPVL NL   +KL++PLL+GL+RLL LLSN FNVTLG+KL  +L+QW +P+++
Sbjct: 1647 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1776          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EAJ9_ASPOF)

HSP 1 Score: 121 bits (303), Expect = 3.070e-28
Identity = 71/149 (47.65%), Postives = 96/149 (64.43%), Query Frame = 1
Query:   28 ITTALQLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
            +TT  +LR + I L+   M  +    ++T +  + R++ IS+FFKSLT R  ++V  A+  L QVI        +  MPKDLLQS LRP+L NL H + L++PLLQGL+RLL LLSNWFNVTLG KL  +L++W EP+KL      KAW
Sbjct: 1194 VTTLNKLRTACIELLCTAMAWQD---LKTPIHSELRSKIISMFFKSLTCRTPEIVSVAKEGLRQVI-------QQQKMPKDLLQSSLRPILVNLAHTKSLNMPLLQGLARLLELLSNWFNVTLGVKLLDHLKKWLEPEKLAQTQ--KAW 1330          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DAI0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.090e-28
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
            QLR++AI+L+         AF+  + L   +DAR R + +FFK LT +  ++VD AQ AL  V+  N++ +++S +PK+LLQ CLRPVL NL   +KL++PLL+GL+RLL LLSN FNVTLG+KL  +L+QW +P+++
Sbjct: 1647 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1776          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BKN8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.090e-28
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
            QLR++AI+L+         AF+  + L   +DAR R + +FFK LT +  ++VD AQ AL  V+  N++ +++S +PK+LLQ CLRPVL NL   +KL++PLL+GL+RLL LLSN FNVTLG+KL  +L+QW +P+++
Sbjct: 1654 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGIFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1783          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZWG2_SALSN)

HSP 1 Score: 120 bits (302), Expect = 4.190e-28
Identity = 74/148 (50.00%), Postives = 94/148 (63.51%), Query Frame = 1
Query:   31 TTALQLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQTLPDPKAW 474
            T+  +LR + I L+   M     A  +T    D R + IS+FFKSLTSR+ ++V  A+  L QVI   R       MPK+LLQS LRP+L NL H + LS+PLLQGL+RLL LLSNWFNVTLG KL  +L++W EP+KL      KAW
Sbjct: 1353 TSLNKLRTACIELLCTAMAW---ADFKTQNHSDLRAKVISMFFKSLTSRSPEIVAVAKEGLRQVILQQR-------MPKELLQSSLRPILVNLAHTKNLSMPLLQGLARLLELLSNWFNVTLGGKLLEHLKKWLEPEKLALTQ--KAW 1488          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UM79_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.210e-28
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
            QLR++AI+L+         AF+  D L   +D+R R + +FF+ LT +  ++VD AQ AL  V+  N++ +++S +PK+LLQ CLRPVL NL   +KL++PLL+GLSRLL LLSN FNVTLG+KL  +L+QW +P+++
Sbjct: 1665 QLRIAAIQLLR-------AAFVNDDTLNQHQDSRNRFVGVFFRFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLSRLLGLLSNCFNVTLGEKLLEHLKQWRDPERI 1794          
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Match: Uncharacterized (protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9L1_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.210e-28
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query:   43 QLRVSAIRLMHIVMVTKPEAFMETDVL---KDARTRCISLFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVLKNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKL 447
            QLR++AI+L+         AF+  + L   +DAR R + +FFK LT +  ++VD AQ AL  V+  N++ +++S +PK+LLQ CLRPVL NL   +KL++PLL+GL+RLL LLSN FNVTLG+KL  +L+QW +P+++
Sbjct: 1649 QLRIAAIQLLR-------AAFVNDETLNQHQDARNRFVGVFFKFLTGQPKELVDCAQKALTDVVIMNKRNQERS-LPKELLQQCLRPVLLNLADYRKLTIPLLEGLARLLALLSNCFNVTLGEKLLEHLKQWRDPERI 1778          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9718.17820.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.450e-8499.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
FAT3.040e-8297.22domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.780e-2847.83protein (Fragment) n=2 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized3.050e-2847.83protein (Fragment) n=3 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized3.070e-2847.65protein n=2 Tax=Asparagus officinalis TaxID=4686 R... [more]
Uncharacterized3.090e-2847.83protein (Fragment) n=2 Tax=Aphanomyces astaci TaxI... [more]
Uncharacterized3.090e-2847.83protein n=4 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized4.190e-2850.00protein n=1 Tax=Salvia splendens TaxID=180675 RepI... [more]
Uncharacterized4.210e-2847.83protein n=3 Tax=Aphanomyces invadans TaxID=157072 ... [more]
Uncharacterized4.210e-2847.83protein n=3 Tax=Aphanomyces astaci TaxID=112090 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9718contigEcto-sp9_F_contig9718:1769..3171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.7
Seed ortholog evalue1.3e-73
Seed eggNOG ortholog2880.D8LFI6
KEGG koko:K08874
KEGG Pathwayko05166,map05166
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0889@2759
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categorysignal peptide
Exons3
Model size598
Cds size597
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9718.17820.1prot_Ecto-sp9_F_contig9718.17820.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9718 1769..3170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931062.061142-CDS-Ecto-sp9_F_contig9718:1768..19541622931062.061142-CDS-Ecto-sp9_F_contig9718:1768..1954Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9718 1769..1954 +
1692279014.8519447-CDS-Ecto-sp9_F_contig9718:1768..19541692279014.8519447-CDS-Ecto-sp9_F_contig9718:1768..1954Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9718 1769..1954 +
1622931062.0811234-CDS-Ecto-sp9_F_contig9718:2455..27411622931062.0811234-CDS-Ecto-sp9_F_contig9718:2455..2741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9718 2456..2741 +
1692279014.8624098-CDS-Ecto-sp9_F_contig9718:2455..27411692279014.8624098-CDS-Ecto-sp9_F_contig9718:2455..2741Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9718 2456..2741 +
1622931062.0995467-CDS-Ecto-sp9_F_contig9718:3045..31701622931062.0995467-CDS-Ecto-sp9_F_contig9718:3045..3170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9718 3046..3170 +
1692279014.8736742-CDS-Ecto-sp9_F_contig9718:3045..31701692279014.8736742-CDS-Ecto-sp9_F_contig9718:3045..3170Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9718 3046..3170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9718.17820.1

>prot_Ecto-sp9_F_contig9718.17820.1 ID=prot_Ecto-sp9_F_contig9718.17820.1|Name=mRNA_Ecto-sp9_F_contig9718.17820.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=199bp
YICAFLFAAITTALQLRVSAIRLMHIVMVTKPEAFMETDVLKDARTRCIS
LFFKSLTSRADQVVDAAQAALVQVIFTNRQFKDKSGMPKDLLQSCLRPVL
KNLTHIQKLSLPLLQGLSRLLYLLSNWFNVTLGDKLFGYLRQWTEPQKLQ
TLPDPKAWMEARRGTRRGGRHNGTLPPPAALPEVLGPARQAHAAARNGS
back to top

mRNA from alignment at Ecto-sp9_F_contig9718:1769..3171+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9718.17820.1 ID=mRNA_Ecto-sp9_F_contig9718.17820.1|Name=mRNA_Ecto-sp9_F_contig9718.17820.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1403bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9718:1769..3171+ (Ectocarpus species9 EcSCA_722f female)
TACATATGCGCTTTTCTTTTTGCCGCCATCACGACCGCCCTCCAGCTGCG TGTGTCTGCGATCCGACTGATGCACATCGTGATGGTGACCAAGCCGGAGG CGTTCATGGAGACGGACGTGCTCAAGGACGCCCGCACGCGGTGCATCTCG CTGTTCTTCAAGAGCCTCACCAGCAGGGCCGATCAGGTACTGCCGTACCT TATTTTACCCTTTTTTTTTCAGAGAGGATGGGCGTATGTACCAAGTGCTT ATATGCCTCTCTTGAGGCATTTATTTCTCCTTGGTTTGGCTATTCATATT TATACTTTTTTTGTTTGTTTGTATGACGTACCTTTTGTGAGCCAACGTTT CCTTGTACCATCGCTTTGTTTAGGCGTTCTGTTTCTCCCTTTGTTCGGTT TAATCACATTATGTACCGTTTTTTGGTTTGCCTGCGGCTGCGGAAATCAT CCGCCTTTGTACACACCAGGGAGACTGAGAATTTGAGTGTCAATTGTCTC AGCCTAGAGACGCTCCCGCTCACGTTTATGCAGCTTCATTCCGTAGCCGA AAATGGGTTTGAAACCTTCAATGGATGAATCCTCGATGGGATGTTGGCAA ACCACAACTCGATGCTCATCGGCACGTGTCTTGGGTGGTCGACACTGGGG CAAAATTCCCATGTTTTCTCTCTACGAAACCCAACAGGTGGTAGACGCAG CCCAGGCGGCGCTCGTGCAAGTAATCTTCACGAACCGGCAGTTCAAGGAC AAGTCCGGCATGCCCAAAGACCTGCTGCAGTCATGCCTCCGCCCGGTGCT CAAGAACCTGACGCACATCCAGAAGCTCAGCCTGCCGCTGCTGCAGGGGC TGAGCCGCCTGCTGTACCTGCTTTCGAACTGGTTCAACGTTACCCTGGGC GACAAGCTGTTCGGGTACCTGCGGCAGTGGACCGAGCCGCAGAAGCTGCA GACCTTGCCTGACCCGAAGGCATGTAGTCGCTGCTGCTGTTAGTAGTGTT GTCGGAAGTGGTGTGTTTTTTTTGTTCTTTGGTCGGAGTGTTGATGTTGT TTTTTGTTGTTGAAGGTGGCGGTAGTGTTTGGTGTTGTTATTGTCGTCGC AGGTGTTGTTGCTGCTGCTGTTTTGTTGTTATTGTTGATGTTGTTGTTGC GGGTGGTGTTAATGGTGGTAGTGTTTGTTGATGGTGTTGATGTTTGTTGT TGCTCTGTGCTCTGGCTCCATAACCTCCAATACTATCCGCTCTTAACCTT CCCCCCTCCCCCCTCCCTCGTTGGCAGGGATGGAAGCCCGGAGAGGAACC CGACGTGGCGGCCGCCATAATGGGACTCTTCCACCTCCTGCCGCACTCCC CGAAGTTCTTGGACCAGCTCGTCAAGCTCACGCTGCAGCTCGAAACGGTT CTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9718:1769..3171+

>mRNA_Ecto-sp9_F_contig9718.17820.1 ID=mRNA_Ecto-sp9_F_contig9718.17820.1|Name=mRNA_Ecto-sp9_F_contig9718.17820.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9718:1769..3171+ (Ectocarpus species9 EcSCA_722f female)
TACATATGCGCTTTTCTTTTTGCCGCCATCACGACCGCCCTCCAGCTGCG
TGTGTCTGCGATCCGACTGATGCACATCGTGATGGTGACCAAGCCGGAGG
CGTTCATGGAGACGGACGTGCTCAAGGACGCCCGCACGCGGTGCATCTCG
CTGTTCTTCAAGAGCCTCACCAGCAGGGCCGATCAGTACATATGCGCTTT
TCTTTTTGCCGCCATCACGACCGCCCTCCAGCTGCGTGTGTCTGCGATCC
GACTGATGCACATCGTGATGGTGACCAAGCCGGAGGCGTTCATGGAGACG
GACGTGCTCAAGGACGCCCGCACGCGGTGCATCTCGCTGTTCTTCAAGAG
CCTCACCAGCAGGGCCGATCAGGTGGTAGACGCAGCCCAGGCGGCGCTCG
TGCAAGTAATCTTCACGAACCGGCAGTTCAAGGACAAGTCCGGCATGCCC
AAAGACCTGCTGCAGTCATGCCTCCGCCCGGTGCTCAAGAACCTGACGCA
CATCCAGAAGCTCAGCCTGCCGCTGCTGCAGGGGCTGAGCCGCCTGCTGT
ACCTGCTTTCGAACTGGTTCAACGTTACCCTGGGCGACAAGCTGTTCGGG
TACCTGCGGCAGTGGACCGAGCCGCAGAAGCTGCAGACCTTGCCTGACCC
GAAGGCATGTGGTAGACGCAGCCCAGGCGGCGCTCGTGCAAGTAATCTTC
ACGAACCGGCAGTTCAAGGACAAGTCCGGCATGCCCAAAGACCTGCTGCA
GTCATGCCTCCGCCCGGTGCTCAAGAACCTGACGCACATCCAGAAGCTCA
GCCTGCCGCTGCTGCAGGGGCTGAGCCGCCTGCTGTACCTGCTTTCGAAC
TGGTTCAACGTTACCCTGGGCGACAAGCTGTTCGGGTACCTGCGGCAGTG
GACCGAGCCGCAGAAGCTGCAGACCTTGCCTGACCCGAAGGCATGGATGG
AAGCCCGGAGAGGAACCCGACGTGGCGGCCGCCATAATGGGACTCTTCCA
CCTCCTGCCGCACTCCCCGAAGTTCTTGGACCAGCTCGTCAAGCTCACGC
TGCAGCTCGAAACGGTTCTGGATGGAAGCCCGGAGAGGAACCCGACGTGG
CGGCCGCCATAATGGGACTCTTCCACCTCCTGCCGCACTCCCCGAAGTTC
TTGGACCAGCTCGTCAAGCTCACGCTGCAGCTCGAAACGGTTCT
back to top