mRNA_Ecto-sp9_F_contig960.17718.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig960.17718.1
Unique NamemRNA_Ecto-sp9_F_contig960.17718.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig960.17718.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q9_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 9.380e-90
Identity = 195/252 (77.38%), Postives = 200/252 (79.37%), Query Frame = 1 
Query:  115 MKPASGGQASLGGGASSRPSPTSSLASKGAPEASTYGNGRSSXXXXXXGGLSLPGRRPAATTAHPMPRPSPLAGRTAASASGGMRRFNTAKAPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RTASPDTSERSLATRTISQQSSTGCGAGSTSSRQDDGNNQAPPDAELPQERPACWVPAPAALNEALSATGGSPATRPPGTSTYRRPSRGDAGGGPGTTGDRSGAERSGVRRVAGEEE 855
            M+PA GGQAS GGGASSRPSP +SL SKGAPEASTYGNGRSS XXXX GGLSLPGRRP ATTAHPMPRPSPLAGR AASASGGMRRFNTA+ PRA+    XXXXXX   XXXXXXX                   RTASPDTSERSLA R ISQQSSTGC AGSTSSR+DD        AEL QERPACWVP  AALNEALSATGGSPATRPPGTSTYRRP RGDAGGGPGTTGDR GA RSGVRRVAGEEE
Sbjct:    1 MQPAGGGQASRGGGASSRPSPNASLTSKGAPEASTYGNGRSSGXXXXSGGLSLPGRRPVATTAHPMPRPSPLAGRIAASASGGMRRFNTAQTPRAAPAAAXXXXXXTVTXXXXXXXAVDVRAVAAGVAATAVGAYRTASPDTSERSLAMRRISQQSSTGCCAGSTSSRRDD--------AELSQERPACWVPGAAALNEALSATGGSPATRPPGTSTYRRPPRGDAGGGPGTTGDRPGAGRSGVRRVAGEEE 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig960.17718.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.380e-9077.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig960contigEcto-sp9_F_contig960:19281..22224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size863
Cds size861
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig960.17718.1prot_Ecto-sp9_F_contig960.17718.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig960 19281..22224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.7157779-CDS-Ecto-sp9_F_contig960:19280..194901622931046.7157779-CDS-Ecto-sp9_F_contig960:19280..19490Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 19281..19490 -
1692279007.7146747-CDS-Ecto-sp9_F_contig960:19280..194901692279007.7146747-CDS-Ecto-sp9_F_contig960:19280..19490Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 19281..19490 -
1622931046.732014-CDS-Ecto-sp9_F_contig960:20193..203171622931046.732014-CDS-Ecto-sp9_F_contig960:20193..20317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 20194..20317 -
1692279007.726883-CDS-Ecto-sp9_F_contig960:20193..203171692279007.726883-CDS-Ecto-sp9_F_contig960:20193..20317Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 20194..20317 -
1622931046.750455-CDS-Ecto-sp9_F_contig960:20552..210281622931046.750455-CDS-Ecto-sp9_F_contig960:20552..21028Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 20553..21028 -
1692279007.7390313-CDS-Ecto-sp9_F_contig960:20552..210281692279007.7390313-CDS-Ecto-sp9_F_contig960:20552..21028Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 20553..21028 -
1622931046.7693558-CDS-Ecto-sp9_F_contig960:22173..222241622931046.7693558-CDS-Ecto-sp9_F_contig960:22173..22224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 22174..22224 -
1692279007.749896-CDS-Ecto-sp9_F_contig960:22173..222241692279007.749896-CDS-Ecto-sp9_F_contig960:22173..22224Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 22174..22224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig960.17718.1

>prot_Ecto-sp9_F_contig960.17718.1 ID=prot_Ecto-sp9_F_contig960.17718.1|Name=mRNA_Ecto-sp9_F_contig960.17718.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=287bp
SRESRPLHTGAHVLDHPVHASNSPLPPNNLQQRYATRAMKPASGGQASLG
GGASSRPSPTSSLASKGAPEASTYGNGRSSGGGGGSGGLSLPGRRPAATT
AHPMPRPSPLAGRTAASASGGMRRFNTAKAPRASAPAAAAVTAAAIAAAA
VDVRAVATGFAATAVGANRTASPDTSERSLATRTISQQSSTGCGAGSTSS
RQDDGNNQAPPDAELPQERPACWVPAPAALNEALSATGGSPATRPPGTST
YRRPSRGDAGGGPGTTGDRSGAERSGVRRVAGEEEEG
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mRNA from alignment at Ecto-sp9_F_contig960:19281..22224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig960.17718.1 ID=mRNA_Ecto-sp9_F_contig960.17718.1|Name=mRNA_Ecto-sp9_F_contig960.17718.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2944bp|location=Sequence derived from alignment at Ecto-sp9_F_contig960:19281..22224- (Ectocarpus species9 EcSCA_722f female)
AGCAGAGAGAGCAGGCCCTTGCACACCGGAGCACACGTCCTCGACCATCC
GGTGAGCCAAGTCTTTGCATTTCGTGGATCGGAGGTCTACATGTATAAGA
CTCCACGTACTGCGCCGCCCGTGGCCAGACCGTTGCCTGTCCGCGCTCGG
CGTATCGAGATATGTACAGCAGTATTTTCCCGGATCTATCTGCTGGGACA
GCTCTGGTGCAGGTGCCGAAGTGTATTTGACGTGTGCAACCACCACAGAT
GTTAGAGCGAGAATTCGCCCCTTGGCTCGGCCTGAGTCTACACGCCGGGC
TAGAGGGCTTTCGCTGCAGCAGCAATTGCAGATTTCATCACGGGGTGCCA
AGTTGTTGGTGCTGTTGGTTCACGTGACTACTACTGCGGTGTGCTGTCTA
CAGTCTAGACTATATGTGGAGTCTGTGTAAATTTCAAATTTCCGCACGAC
AGAGTGACGAGTGACTTCCAGAGAGATAAGGTCTATCTGTGTCCGGCAAA
GCGTTGGCGCTGCTCCGTGAGTGGAAGTCGTGACGGGCCTGCCCCCTAGA
GCCATATACATACCGTGTCTGCGATGGCTTTGTTCCGGAAGGACTTCTTC
CTCAGGACAAGACAACCACACGCGGAGACACAGACATTTTTCGACTTTTG
GACAGAATTCCGCCGCCTGCTTTGGCACTTTGAATCTTGAATCCCCACGA
TCAAGAGAGAAAAGTGACGGTAACGATATACTCTAGCCTACATTACTCGA
GACGCGTGCTGCAAGATCGCCTTATCCACAGTGAAATGTCCCCGTAATCG
CACGGCCGGTGGCAGCGGTGTGTGATGTACGGTGGACTACTGTACACATA
CATGCGATTTTGTAGCAGTGTGGGTTCCCCGCGCACACTAAATACATGAT
GATACACCATGCTCTTGCAAAGACGCCGCTAGCCTAAAAGTACACAATCG
CGCATTCGCTCGAAAAGCCACGGTGAGAACAGCATATAATCCGACACAGC
TCGTACGTAAAACCGGCACTACCGACCGTTGAGATGCAACGATGCAACCT
TCATGACACACGTCCTCTTGCGATTCCCCTGGGAGCCAAGTCACATAATT
CCCGAAGGGGAGCCCTGTGTTGCTATAGGCTATGTCTTCTCTCAGCACGC
CCTCAGTTTCCGCCCCTTGTCCTTAATCCGCCCGTTCGTTTGGCAGGTTC
ACGCGTCGAACTCTCCCCTGCCACCAAACAACCTCCAGCAACGGTACGCC
ACACGCGCCATGAAACCAGCAAGCGGTGGACAAGCCTCACTCGGCGGTGG
CGCGTCTTCGCGACCATCCCCGACTTCATCGCTCGCATCAAAGGGAGCTC
CCGAAGCGTCAACGTACGGCAACGGCCGCAGTAGCGGTGGAGGCGGCGGC
AGCGGCGGCCTTTCACTACCGGGCCGGCGCCCGGCCGCTACGACCGCGCA
CCCCATGCCCCGCCCGTCTCCTCTTGCCGGGAGAACAGCAGCTTCAGCGT
CTGGGGGAATGCGTCGTTTCAATACCGCCAAGGCGCCCCGTGCTTCTGCT
CCTGCTGCTGCTGCTGTTACCGCTGCTGCCATCGCCGCTGCTGCTGTCGA
TGTTCGAGCTGTTGCTACAGGCTTTGCTGCTACTGCTGTTGGAGCTAACC
GTACCGCGAGCCCTGACACCAGGTGTGGCGCAATGCCCAGGCGAAGAAAA
ACAGATCTAATGAAAATCCGTTGACAGCGGGTTTGGGTATTGTTAATTAG
CTTGAATAATACCATACGATAGCATTTGCTTGGAGTAGAATAGGAGGACG
TGGAGACCACAGCAACAAGCGCCTCCTGGTGAATTACCCCAATGCGTTCA
TACAGCCGGTTGTTTTTTGGTTGACCCTTGGCATTTTCTACGTTTTTTCT
CTTTCAGCGAGAGGTCTCTGGCGACGAGAACGATATCACAGCAGTCGTCT
ACTGGATGTGGTGCTGGTTCTACTTCTTCACGGCAAGACGATGGAAACAA
TCAAGCCCCACCCGATGCCGAACTTCCCCAGGTACGCTAGAGTATTTTTT
CAAAAAGTGGTTGTGTTTGTCGCTGCTGTTGTGGCTGGTGGAGCCGGTAT
TATTGAAAGTGGTGTTGGGGGTGGTAGTGTACTCGCACACACTAGCCCAA
CATCTGGTACCAATATCCCGATACTTCGAAGCCAATGACCACAAGTTCCG
TTGTCAGAAGAGTCTCCTTGCATGGCGCAAAACACGTACCAGCATGGTGC
AGCATAAACTTAAGCACGCGCTTCAGAATGCGAAGAAACATATAAAAACT
TAAGCACGCGCTTCAGAATGCAAAGAAAGATATAAAGCAAACGTCTGTGA
GAAAAGGCTTGTTGTATACATGAGACGACTACCCACCGTCCAGTGATGAC
ACCGCGAGAGACGCTACGAGGTTAGATTGCTCCACGAGACCAGCACCATG
TACTGGATATTGGACCACATGGTCTCTACGACTGAGGATGGGGGGCGCAC
TATTCGTAGCTCGTGCTGAGCCACTGTGTATCGACATACATACCCAATAT
GGTCTTACATAGGAGCCCAGCGCTATTTCGTGCTTGCCCCCTACCCGTTT
GTCTTAGTACTGTTCTTCACAGCAGTAAAACGAGCACAAATATACCAACA
ACGCAGCTTTGTCCGAACCCCACCAAATGATGCATTCCTTCCATTGACGC
GACGTGCCCGCATGTAATGGTGCGGCCTACATAGGAACGCCCCGCTTGTT
GGGTCCCGGCGCCGGCGGCGTTGAACGAGGCATTGTCGGCCACCGGCGGC
TCTCCTGCGACGCGCCCTCCCGGAACCTCCACTTACCGCCGTCCCTCTCG
CGGAGATGCCGGCGGCGGCCCCGGTACCACTGGCGATAGGTCCGGTGCAG
AGAGGTCCGGTGTGAGGAGGGTAGCAGGAGAAGAGGAGGAAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig960:19281..22224-

>mRNA_Ecto-sp9_F_contig960.17718.1 ID=mRNA_Ecto-sp9_F_contig960.17718.1|Name=mRNA_Ecto-sp9_F_contig960.17718.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1722bp|location=Sequence derived from alignment at Ecto-sp9_F_contig960:19281..22224- (Ectocarpus species9 EcSCA_722f female)
AGCAGAGAGAGCAGGCCCTTGCACACCGGAGCACACGTCCTCGACCATCC
GAGCAGAGAGAGCAGGCCCTTGCACACCGGAGCACACGTCCTCGACCATC
CGGTTCACGCGTCGAACTCTCCCCTGCCACCAAACAACCTCCAGCAACGG
TACGCCACACGCGCCATGAAACCAGCAAGCGGTGGACAAGCCTCACTCGG
CGGTGGCGCGTCTTCGCGACCATCCCCGACTTCATCGCTCGCATCAAAGG
GAGCTCCCGAAGCGTCAACGTACGGCAACGGCCGCAGTAGCGGTGGAGGC
GGCGGCAGCGGCGGCCTTTCACTACCGGGCCGGCGCCCGGCCGCTACGAC
CGCGCACCCCATGCCCCGCCCGTCTCCTCTTGCCGGGAGAACAGCAGCTT
CAGCGTCTGGGGGAATGCGTCGTTTCAATACCGCCAAGGCGCCCCGTGCT
TCTGCTCCTGCTGCTGCTGCTGTTACCGCTGCTGCCATCGCCGCTGCTGC
TGTCGATGTTCGAGCTGTTGCTACAGGCTTTGCTGCTACTGCTGTTGGAG
CTAACCGTACCGCGAGCCCTGACACCAGGTTCACGCGTCGAACTCTCCCC
TGCCACCAAACAACCTCCAGCAACGGTACGCCACACGCGCCATGAAACCA
GCAAGCGGTGGACAAGCCTCACTCGGCGGTGGCGCGTCTTCGCGACCATC
CCCGACTTCATCGCTCGCATCAAAGGGAGCTCCCGAAGCGTCAACGTACG
GCAACGGCCGCAGTAGCGGTGGAGGCGGCGGCAGCGGCGGCCTTTCACTA
CCGGGCCGGCGCCCGGCCGCTACGACCGCGCACCCCATGCCCCGCCCGTC
TCCTCTTGCCGGGAGAACAGCAGCTTCAGCGTCTGGGGGAATGCGTCGTT
TCAATACCGCCAAGGCGCCCCGTGCTTCTGCTCCTGCTGCTGCTGCTGTT
ACCGCTGCTGCCATCGCCGCTGCTGCTGTCGATGTTCGAGCTGTTGCTAC
AGGCTTTGCTGCTACTGCTGTTGGAGCTAACCGTACCGCGAGCCCTGACA
CCAGCGAGAGGTCTCTGGCGACGAGAACGATATCACAGCAGTCGTCTACT
GGATGTGGTGCTGGTTCTACTTCTTCACGGCAAGACGATGGAAACAATCA
AGCCCCACCCGATGCCGAACTTCCCCAGCGAGAGGTCTCTGGCGACGAGA
ACGATATCACAGCAGTCGTCTACTGGATGTGGTGCTGGTTCTACTTCTTC
ACGGCAAGACGATGGAAACAATCAAGCCCCACCCGATGCCGAACTTCCCC
AGGAACGCCCCGCTTGTTGGGTCCCGGCGCCGGCGGCGTTGAACGAGGCA
TTGTCGGCCACCGGCGGCTCTCCTGCGACGCGCCCTCCCGGAACCTCCAC
TTACCGCCGTCCCTCTCGCGGAGATGCCGGCGGCGGCCCCGGTACCACTG
GCGATAGGTCCGGTGCAGAGAGGTCCGGTGTGAGGAGGGTAGCAGGAGAA
GAGGAGGAAGGGGAACGCCCCGCTTGTTGGGTCCCGGCGCCGGCGGCGTT
GAACGAGGCATTGTCGGCCACCGGCGGCTCTCCTGCGACGCGCCCTCCCG
GAACCTCCACTTACCGCCGTCCCTCTCGCGGAGATGCCGGCGGCGGCCCC
GGTACCACTGGCGATAGGTCCGGTGCAGAGAGGTCCGGTGTGAGGAGGGT
AGCAGGAGAAGAGGAGGAAGGG
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