mRNA_Ecto-sp9_F_contig9593.17710.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9593.17710.1
Unique NamemRNA_Ecto-sp9_F_contig9593.17710.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9593.17710.1 vs.
Match: Chromosome (20 open reading frame 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD7_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 1.410e-75
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 1 
Query:    1 MRFRVLEVDLAHVLQGQASSENSRREENTPAASLVDALGSCGEEEALPDGVRVFAEALPGFVDNLVFDETRGGYVAGAGTKVTAPFSALHLALKKPAIFRTIIGKLVPMGVIENLVP 351
            MRFRVLEVDLAHVLQGQASSENSRREENTPAASLVDALGSCGEEEALPDGVRVFAEALPGFVDNLVFDETRGGYVAGAGTKV APFSALHLALKKPAIFRTIIGKLVPMGVIENLVP
Sbjct:    1 MRFRVLEVDLAHVLQGQASSENSRREENTPAASLVDALGSCGEEEALPDGVRVFAEALPGFVDNLVFDETRGGYVAGAGTKVAAPFSALHLALKKPAIFRTIIGKLVPMGVIENLVP 117
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BLAST of mRNA_Ecto-sp9_F_contig9593.17710.1 vs.
Match: Str_synth (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN1_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 3.580e-70
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 1 
Query:    1 MRFRVLEVDLAHVLQGQASSENSRREENTPAASLVDALGSCGEEEALPDGVRVFAEALPGFVDNLVFDETRGGYVAGAGTKVTAPFSALHLALKKPAIFRTIIGKLVPMGVIENLVP 351
            MRFRVLEVDLAHVLQGQASSENS REE TPAASLVDALGSCGEEEALPDGVRVFAEALPGFVDNLVFDETRGGYVAGAGTKV APFSALHLALKKPAIFRTIIGKLVPMGVIENLVP
Sbjct:  291 MRFRVLEVDLAHVLQGQASSENSHREEKTPAASLVDALGSCGEEEALPDGVRVFAEALPGFVDNLVFDETRGGYVAGAGTKVAAPFSALHLALKKPAIFRTIIGKLVPMGVIENLVP 407
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BLAST of mRNA_Ecto-sp9_F_contig9593.17710.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRQ2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.380e-9
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:    4 RFRVLEVDLAHVLQGQASSENSRREENTPAASLVDALGSCGEEEALPDGVRVFAEALPGFVDNLVFD-----ETRGGYVAGAGTKVTAPFSALHLALKKPAIFRTIIGKLVPMGVIENLVPR 354
            RFRVL+V+   VL   AS   S  E+     +L     +  E  A+  GV  F   +PG VDN+  D     + +  Y+ G G+K TAPFS L   L+   + R II ++VPM ++E LVPR
Sbjct:  318 RFRVLKVNTHKVLSNVASLTASCEEDGGLYQALAMNAHTESENYAIT-GVTTFIPNIPGLVDNVRRDTKLSKDGKEYYLFGLGSKSTAPFSLLWTVLQSN-LLREIIERVVPMKLVEKLVPR 437
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9593.17710.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Chromosome1.410e-7599.1520 open reading frame 3 n=1 Tax=Ectocarpus silicul... [more]
Str_synth3.580e-7097.44domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical6.380e-937.70protein (Fragment) n=2 Tax=Spumella elongata TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9593contigEcto-sp9_F_contig9593:1440..5050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue3e-57
Seed eggNOG ortholog2880.D7FPD7
Preferred nameYLS2
KEGG koko:K21407
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009605,GO:0009607,GO:0009611,GO:0009615,GO:0009620,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0009753,GO:0010033,GO:0012505,GO:0014070,GO:0016020,GO:0016787,GO:0016788,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051704,GO:0051707,GO:1901700
EggNOG free text desc.strictosidine synthase activity
EggNOG OGsCOG1185@1,KOG1520@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-14_004550.1
Exons3
Model size357
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9593.17710.1prot_Ecto-sp9_F_contig9593.17710.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9593 1440..5050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.5256333-CDS-Ecto-sp9_F_contig9593:1439..15141622931045.5256333-CDS-Ecto-sp9_F_contig9593:1439..1514Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9593 1440..1514 -
1692279007.0074635-CDS-Ecto-sp9_F_contig9593:1439..15141692279007.0074635-CDS-Ecto-sp9_F_contig9593:1439..1514Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9593 1440..1514 -
1622931045.5470178-CDS-Ecto-sp9_F_contig9593:2209..23131622931045.5470178-CDS-Ecto-sp9_F_contig9593:2209..2313Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9593 2210..2313 -
1692279007.0209255-CDS-Ecto-sp9_F_contig9593:2209..23131692279007.0209255-CDS-Ecto-sp9_F_contig9593:2209..2313Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9593 2210..2313 -
1622931045.566319-CDS-Ecto-sp9_F_contig9593:4872..50501622931045.566319-CDS-Ecto-sp9_F_contig9593:4872..5050Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9593 4873..5050 -
1692279007.0310607-CDS-Ecto-sp9_F_contig9593:4872..50501692279007.0310607-CDS-Ecto-sp9_F_contig9593:4872..5050Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9593 4873..5050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9593.17710.1

>prot_Ecto-sp9_F_contig9593.17710.1 ID=prot_Ecto-sp9_F_contig9593.17710.1|Name=mRNA_Ecto-sp9_F_contig9593.17710.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=119bp
MRFRVLEVDLAHVLQGQASSENSRREENTPAASLVDALGSCGEEEALPDG
VRVFAEALPGFVDNLVFDETRGGYVAGAGTKVTAPFSALHLALKKPAIFR
TIIGKLVPMGVIENLVPR*
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mRNA from alignment at Ecto-sp9_F_contig9593:1440..5050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9593.17710.1 ID=mRNA_Ecto-sp9_F_contig9593.17710.1|Name=mRNA_Ecto-sp9_F_contig9593.17710.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3611bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9593:1440..5050- (Ectocarpus species9 EcSCA_722f female)
ATGCGATTCCGGGTGCTGGAGGTTGATCTGGCTCATGTTCTCCAGGGGCA
GGCGTCTTCGGAGAACTCCCGCCGAGAAGAAAACACGCCTGCCGCATCGC
TCGTCGACGCCCTGGGGTCTTGCGGAGAGGAGGAGGCCTTGCCCGACGGG
GTGCGAGTTTTCGCGGAGGCGTTGCCAGGTATGATGATGAAACCGCCACG
TTTGTTTTTTGCGGTGTTCCTCCTGTCTTTTTGTGTGGAACATGATGAGC
GAAAACAATGGCAAGGATGGCGGCGGCGGCGACAATGGCGACACCCAGAA
CATGAACATGAACAACGACAACAACAACGTGTACAGCAAGTACTTAGGGT
TCAAATTACATCTGCGATTTAGATGTCTGCCAGACTTTCTGGCCGCCGGA
TGAATCCTTGGGGTGTTAGCATGGGGTGGAAACGCCTCCCTTATTGCTTG
TGCAGCACTTACGAAGTTATAAAAGTATGTCGTTGGTTACCACACCGCAA
CAGTAAAACGTGTTTCAGATCACGTATCGCGAATATTGTACATACTACCG
CTCTCTTTACCATGAAGATTGCACCGGGCCACACTCAGAATCGTTTGTTG
AACCCCGCTTTTCTTAGGGCTGCACTACTACCACGCAAGGATTGAGTTTG
TTTAGGGTTTCCGCCCTCAATGATGACCGCTGTCACACAACAATAGCCGC
TGCGTTGCTTAGTTGGTAACCTACAGCAGTAGTTACACCTTCTGTCTCTT
AGCTGTAGTTTTGAGTCTCTCTGGAGTGGAAAACAATCGGAACTTAGACC
TACAAGTGGAACGAGCGAAGAGCCGTGACTGCACGCAAGCAAGAGGGGAA
GGGAGTGCTGAATCCTTCTCGCGCTAAGAGCCGATCGCAACCACCCCAGT
AGGAGAAGAAAACGTGGGGGTGACAGCATAGACACACACCCGTGTCAACC
TTCCTGCCTGTGTGGCCCCGACGGGTATGCATCCTTTTGACGCATGCCGA
AAGGTGTACGGAGGGGGTCTCGGTTTAGCGATTCCCTGTTTAGCGACCAC
AAAATCACGTGGCACCGCCGCACCCCGTTAGTATAACTGCTATATAATTG
TTAGTTCGGTTGAGCGACCTTCCCTGAAAAGCGGCCACATTTCGTCGTGA
CACTACGGTCGCTAAACCGCCCCCCCCACTGTACCGTAGACTGGCGCCCG
GAATACACGGGACGAAACACACACACACGCACACACTTCTGTTGTGATGG
TTTCCGTCTTTAATCCGGAGCGTAGTTTAGCCTTCCCCATGGCGCCCCCT
CACGGGGTCCCACGTCATGGGCTTTGGAGGCAATTTCTGTCTTGAGCCAC
ACTGAGACTAACATATTTCCTTTGGTCAGCCGATAATCGTGGTCGACGCT
ACGAGTATAACACGCACACACATGACGATTTGCCTTTTCTTTCATCCCTC
CTGAAAAACTTAGGTATTTTCATTGGTCAGCCGTAAAGAACACGTAAAGT
GCACACATTGACTGTGGTGGAATTTGGTCGATCAGTGTTCCGTGACGTCA
GAAGACGTCACGAGTTCGTACTGACAGAAAACGAGCTAGCTCAACGGCAT
GCCGTCTCCGAATTCTGTTTGTACGGTACAAGAAGCCTTCAGGCGAAAGC
CTGTCTCGTTGTCGAAATTTCCTCTGGCAGAGTTCTTCGTGGGCTAAATG
GTTTGCGATACCGACGGTCAACCGATTAGTGCCTTGGTGGTACCAATCGG
TCAATCGTAGCTACCGCCACCCATTCAGCGTGCGAAGCTTTTTGGCAAAG
GAATGTTCGACGACTAGTCAACCTCTCTTCGCCTCAAGGCTTAATTGTAC
CATACCAACAGAATTCGGAGGACCGTTTACATTGGGGCTAGCTCTTTTTC
TGCCCGTGCGAACCCGTGACGTGTTCAGGTAGACGTCATGGACTACTAGT
CGACCAAGTTCCATCACGGCCAATACGTTGGGATTTCAGTAGTAGTGAGG
TGGGCGAACAAGGAGGGCGGTGGTTGCAGTGACGTAATAGGAGAAGAAAG
GGAAAAGGGTGACATGGTGATGGAGGGAGGAAAACCGAAGAGAGCAAGAA
TTTCGAGCCAGATCACCTTCCTCACAACAAACGCCGCAGGAGTAGAGAGG
GCCGGCCAAAACATAGCGGTATTTGTGGTGACGCGAGTGGTGGTAAATAA
AGGCAAGGGGGATGATGAAAGCACTCCAAATGAATGCGTGTGCAAAGTAG
CAGGTAGACACATGCAGTGTTCTGCTGTTTGCTACCGTCTTTGTCTTTAT
CCGGAGAACAGCTTAGCCTCCCCCCTCACGGGGTCCCAGATTATGGCATT
TGGACCCATAATCTGCTTGTAGCCTCACTGAGACCGATGCCTTTTCATTG
ATCAGCCTTTAGCATGGTCGATGCTTGTAATAAACACACACAGTTTTGCC
TTTCTTAATCCCCGCTCTAAGACTGTGATATATTGATTGGTCAGCCGGTT
AGCGCGAAATATGCTAATTATGAACACACACACACACACACGGCCATGTA
GCGCAGCACTGACACAACACCGGGTTAGGTTTATTGTCTCGACGCCGACA
ATCGCGCACTGAGAGTTCCGTCAGCACGAGCTATAGTTACGAGCATGGAC
ATTTGCACAGAAAACGAAACATTGCCGCCGTTTACGCTGTTCCTCTCTTT
TGCGACGACGACTATCCGGACATTGTATCATCATCAGGCTTCGTGGACAA
TCTGGTGTTTGACGAGACCAGAGGCGGGTACGTTGCCGGCGCGGGCACCA
AGGTAACCGCGCCGTTCTCCGCCCTGCACCTGGCCCTGAAGGTGATGATG
CCTATAGTATGATATCCTCTGCAAGATGTGTATGTTTTCTTTTCGGGTCG
TCGAGGTTCCCTGGGCTCTTCGAGCCGAAAGCACGTCAGCTGTGTGAGCT
GTTCGAGCTTGGGAAACGTCACTGATGGCAGCTGGCAAATGATTCACGCC
AACACATGCTTTTCTTGCATCTTGCGTCACGCCTTGATGACACTACTACT
CTGCTCTGGTGAGCCTACTCCGGAGGCGTGCCTTGTAGAACCAACATGAC
TCCACCTCCGCAACAACCACGCGCTGTGCGAATTATCGTCGAGGTACACT
TTACCCGTGCATTGAACCTTTTCCAACAGGGAGAGGGTGAGCTTTGGTCC
GTCGTTCTGGAAATACGGAGTACAAGTATGCAACGAAGAAGACAAATAGA
GTCGTTGAAAGGTCGTTAACGTTTGTTTGTTTACTGCTATTCCACATCTC
TCCAGAGCACATATTCTTCGCACAACTTCAAATTTGGTCGTCGCTCCAGA
GCATTCATATTTGTACACCTTCAAATTTTGTGGTCGTTTTCTTGAACCAA
TCAGAACTGAATGTCAATTGTTCTACACTCTGCCCTTTATTTAATCACAG
AATAGCACAACCGCTTGTTTCCGATATCAATGCACGAAATTACCCCTCCC
CCATGCTGCCCCGATACGCCCGACCTTTCTCTGTAGAAACCCGCCATTTT
CAGAACAATAATCGGCAAGCTTGTGCCAATGGGGGTCATCGAGAACTTGG
TTCCAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9593:1440..5050-

>mRNA_Ecto-sp9_F_contig9593.17710.1 ID=mRNA_Ecto-sp9_F_contig9593.17710.1|Name=mRNA_Ecto-sp9_F_contig9593.17710.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9593:1440..5050- (Ectocarpus species9 EcSCA_722f female)
ATGCGATTCCGGGTGCTGGAGGTTGATCTGGCTCATGTTCTCCAGGGGCA
GGCGTCTTCGGAGAACTCCCGCCGAGAAGAAAACACGCCTGCCGCATCGC
TCGTCGACGCCCTGGGGTCTTGCGGAGAGGAGGAGGCCTTGCCCGACGGG
GTGCGAGTTTTCGCGGAGGCGTTGCCAGATGCGATTCCGGGTGCTGGAGG
TTGATCTGGCTCATGTTCTCCAGGGGCAGGCGTCTTCGGAGAACTCCCGC
CGAGAAGAAAACACGCCTGCCGCATCGCTCGTCGACGCCCTGGGGTCTTG
CGGAGAGGAGGAGGCCTTGCCCGACGGGGTGCGAGTTTTCGCGGAGGCGT
TGCCAGGCTTCGTGGACAATCTGGTGTTTGACGAGACCAGAGGCGGGTAC
GTTGCCGGCGCGGGCACCAAGGTAACCGCGCCGTTCTCCGCCCTGCACCT
GGCCCTGAAGGCTTCGTGGACAATCTGGTGTTTGACGAGACCAGAGGCGG
GTACGTTGCCGGCGCGGGCACCAAGGTAACCGCGCCGTTCTCCGCCCTGC
ACCTGGCCCTGAAGAAACCCGCCATTTTCAGAACAATAATCGGCAAGCTT
GTGCCAATGGGGGTCATCGAGAACTTGGTTCCAAGGTGAAAACCCGCCAT
TTTCAGAACAATAATCGGCAAGCTTGTGCCAATGGGGGTCATCGAGAACT
TGGTTCCAAGGTGA
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