mRNA_Ecto-sp9_F_contig959.17705.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig959.17705.1
Unique NamemRNA_Ecto-sp9_F_contig959.17705.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig959.17705.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX2_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 42/72 (58.33%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:   35 TLTLELSALVEKGSGDHWEVAILNSNT-HTWDKIGDLSEVGSKWTTSTLTVMGDGDYMDKDNNNQVPVRIRT 247
            TLTLELSALV+KGSGDHW+V + N+     WDKIGDLSE GS W+TS L VM D      D     P RI T
Sbjct:   90 TLTLELSALVKKGSGDHWQVDMFNTRRGKRWDKIGDLSEAGSDWSTSNLVVMSD------DGCGDAPKRINT 155
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BLAST of mRNA_Ecto-sp9_F_contig959.17705.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.010e-12
Identity = 40/71 (56.34%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:   38 LTLELSALVEKGSGDHWEVAILNSNT-HTWDKIGDLSEVGSKWTTSTLTVMGDGDYMDKDNNNQVPVRIRT 247
            LTLELSALV KGSGD W+V + NS     WDKIGDLS+ GS WTTS L V+  GD          P RI T
Sbjct:   56 LTLELSALVMKGSGDRWQVDMFNSRRGKKWDKIGDLSKAGSDWTTSNL-VVASGDRC-----GDAPKRINT 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig959.17705.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.340e-1558.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.010e-1256.34protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig959contigEcto-sp9_F_contig959:19923..20181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size259
Cds size237
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.0818353-UTR-Ecto-sp9_F_contig959:19922..199441622931045.0818353-UTR-Ecto-sp9_F_contig959:19922..19944Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig959 19923..19944 +
1692279006.811724-UTR-Ecto-sp9_F_contig959:19922..199441692279006.811724-UTR-Ecto-sp9_F_contig959:19922..19944Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig959 19923..19944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.1104252-CDS-Ecto-sp9_F_contig959:19944..201811622931045.1104252-CDS-Ecto-sp9_F_contig959:19944..20181Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig959 19945..20181 +
1692279006.8205655-CDS-Ecto-sp9_F_contig959:19944..201811692279006.8205655-CDS-Ecto-sp9_F_contig959:19944..20181Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig959 19945..20181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig959.17705.1prot_Ecto-sp9_F_contig959.17705.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig959 19945..20181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig959.17705.1

>prot_Ecto-sp9_F_contig959.17705.1 ID=prot_Ecto-sp9_F_contig959.17705.1|Name=mRNA_Ecto-sp9_F_contig959.17705.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
MFRQTLTLELSALVEKGSGDHWEVAILNSNTHTWDKIGDLSEVGSKWTTS
TLTVMGDGDYMDKDNNNQVPVRIRTFQLD
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mRNA from alignment at Ecto-sp9_F_contig959:19923..20181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig959.17705.1 ID=mRNA_Ecto-sp9_F_contig959.17705.1|Name=mRNA_Ecto-sp9_F_contig959.17705.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=259bp|location=Sequence derived from alignment at Ecto-sp9_F_contig959:19923..20181+ (Ectocarpus species9 EcSCA_722f female)
ATACTTTCCGGTCGTTTGGGTTATGTTCCGGCAGACCTTGACCTTGGAGC
TCTCAGCCTTGGTGGAGAAGGGCAGCGGCGACCACTGGGAAGTAGCAATA
CTCAACAGCAACACCCACACGTGGGACAAGATTGGTGACCTTTCCGAGGT
TGGTTCTAAGTGGACCACTTCGACGCTGACGGTGATGGGCGACGGTGACT
ACATGGACAAGGACAACAACAACCAAGTTCCCGTCCGTATTCGCACTTTT
CAATTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig959:19923..20181+

>mRNA_Ecto-sp9_F_contig959.17705.1 ID=mRNA_Ecto-sp9_F_contig959.17705.1|Name=mRNA_Ecto-sp9_F_contig959.17705.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig959:19923..20181+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCCGGCAGACCTTGACCTTGGAGCTCTCAGCCTTGGTGGAGAAGGG
CAGCGGCGACCACTGGGAAGTAGCAATACTCAACAGCAACACCCACACGT
GGGACAAGATTGGTGACCTTTCCGAGGTTGGTTCTAAGTGGACCACTTCG
ACGCTGACGGTGATGGGCGACGGTGACTACATGGACAAGGACAACAACAA
CCAAGTTCCCGTCCGTATTCGCACTTTTCAATTGGACATGTTCCGGCAGA
CCTTGACCTTGGAGCTCTCAGCCTTGGTGGAGAAGGGCAGCGGCGACCAC
TGGGAAGTAGCAATACTCAACAGCAACACCCACACGTGGGACAAGATTGG
TGACCTTTCCGAGGTTGGTTCTAAGTGGACCACTTCGACGCTGACGGTGA
TGGGCGACGGTGACTACATGGACAAGGACAACAACAACCAAGTTCCCGTC
CGTATTCGCACTTTTCAATTGGAC
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