mRNA_Ecto-sp9_F_contig9570.17692.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9570.17692.1
Unique NamemRNA_Ecto-sp9_F_contig9570.17692.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9570.17692.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.420e-12
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 3 
Query:    3 GGQRRVFRLGGSPDEGGSCT-VITDLRQRASRCRGG 107
            GGQRR FRL GSPDEGGSCT VITDLRQRASRCRGG
Sbjct:    3 GGQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGG 38
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BLAST of mRNA_Ecto-sp9_F_contig9570.17692.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.990e-10
Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  103 GGSVGVCRCSRRTYQSGEQQQGVWPVGGRSRSPLGNGAKTP 225
            GGSV +CRCSRR YQ GEQQQG   VG  SRSPLGNG  TP
Sbjct:   38 GGSVRICRCSRRAYQGGEQQQGSLLVGWWSRSPLGNGVNTP 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9570.17692.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.420e-1291.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.990e-1073.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9570contigEcto-sp9_F_contig9570:968..1194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_009300.1
Hectar predicted targeting categoryother localisation
Exons1
Model size227
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.9687717-CDS-Ecto-sp9_F_contig9570:969..11941622931042.9687717-CDS-Ecto-sp9_F_contig9570:969..1194Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9570 970..1194 -
1692279005.8562646-CDS-Ecto-sp9_F_contig9570:969..11941692279005.8562646-CDS-Ecto-sp9_F_contig9570:969..1194Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9570 970..1194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9570.17692.1prot_Ecto-sp9_F_contig9570.17692.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9570 970..1194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9570.17692.1

>prot_Ecto-sp9_F_contig9570.17692.1 ID=prot_Ecto-sp9_F_contig9570.17692.1|Name=mRNA_Ecto-sp9_F_contig9570.17692.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
RGDSEGFFGWAVLQMKGGAARSSQISANALPDVGGGSVGVCRCSRRTYQS
GEQQQGVWPVGGRSRSPLGNGAKTP
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mRNA from alignment at Ecto-sp9_F_contig9570:968..1194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9570.17692.1 ID=mRNA_Ecto-sp9_F_contig9570.17692.1|Name=mRNA_Ecto-sp9_F_contig9570.17692.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=227bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9570:968..1194- (Ectocarpus species9 EcSCA_722f female)
AGGGGGGACAGCGAAGGGTTTTTCGGTTGGGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACGGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAG
GGGGGGGCAGCGTAGGCGTTTGTCGTTGTAGTCGGCGCACTTACCAGAGT
GGCGAGCAGCAGCAGGGGGTTTGGCCGGTGGGTGGGAGGAGCCGGAGTCC
GCTTGGCAATGGAGCCAAGACCCCCGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9570:968..1194-

>mRNA_Ecto-sp9_F_contig9570.17692.1 ID=mRNA_Ecto-sp9_F_contig9570.17692.1|Name=mRNA_Ecto-sp9_F_contig9570.17692.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9570:968..1194- (Ectocarpus species9 EcSCA_722f female)
AGGGGGGACAGCGAAGGGTTTTTCGGTTGGGCGGTTCTCCAGATGAAGGG
GGGAGCTGCACGGTCATCACAGATCTCCGCCAACGCGCTTCCAGATGTAG
GGGGGGGCAGCGTAGGCGTTTGTCGTTGTAGTCGGCGCACTTACCAGAGT
GGCGAGCAGCAGCAGGGGGTTTGGCCGGTGGGTGGGAGGAGCCGGAGTCC
GCTTGGCAATGGAGCCAAGACCCCCAGGGGGGACAGCGAAGGGTTTTTCG
GTTGGGCGGTTCTCCAGATGAAGGGGGGAGCTGCACGGTCATCACAGATC
TCCGCCAACGCGCTTCCAGATGTAGGGGGGGGCAGCGTAGGCGTTTGTCG
TTGTAGTCGGCGCACTTACCAGAGTGGCGAGCAGCAGCAGGGGGTTTGGC
CGGTGGGTGGGAGGAGCCGGAGTCCGCTTGGCAATGGAGCCAAGACCCCC
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