mRNA_Ecto-sp9_F_contig957.17688.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig957.17688.1
Unique NamemRNA_Ecto-sp9_F_contig957.17688.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig957.17688.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 6.800e-136
Identity = 436/451 (96.67%), Postives = 440/451 (97.56%), Query Frame = 1 
Query:   34 MVGVGRAPGFASSLVRCSGAHNAWLTPKEANLRSLATVAERRRGGSRGRGDGHAGRGPVARAKRTGRTQHRNADAPRFQPFGRAGGEGSKVAERLYEDFGINSLKKYSPEATDERKRVLTWLEGTVRMSSRAIADMVEQEPRIAEQETGAISARLAXXXXXXXXXXXXXXXXXHRRPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDTKVAFFCQEMGATLEDVRAVLMTSPNFLLVSIDLMLAPRVAALKDAGVEVSFSAHWNDLAFGPRGEAFDFWVRRQASR 1386
            MVGVGRAPGFASSLVRC GAHNAWLTPKEANLRSLATVAERRRGGSRGRGDGHAGRG VA+AKR GR QHRNADAPRFQPFGRAGGEGSKVAERLYEDFGIN+LKKYSPEATDERKRVLTWLEG VRMSSRAIADMVEQEPRIAEQETGAISARL XXXXXXXXXXXXXXXXX   PSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLD KVAFFCQEMGATLEDVRAVLMTSPNFLL+SIDLMLAPRVA LKDAGV+VSFSAHWNDLAFGPRGEAFDFWVRRQASR
Sbjct:    1 MVGVGRAPGFASSLVRCGGAHNAWLTPKEANLRSLATVAERRRGGSRGRGDGHAGRGSVAQAKRAGRPQHRNADAPRFQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEAFDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig957.17688.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.800e-13696.67protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig957contigEcto-sp9_F_contig957:8426..11247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score413.7
Seed ortholog evalue1.1e-112
Seed eggNOG ortholog2880.D7FVG4
KEGG koko:K15031,ko:K15032
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000990.1
Exons4
Model size1661
Cds size1398
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig957.17688.1prot_Ecto-sp9_F_contig957.17688.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig957 8689..11247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.6026616-UTR-Ecto-sp9_F_contig957:8425..86881622931042.6026616-UTR-Ecto-sp9_F_contig957:8425..8688Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig957 8426..8688 -
1692279005.7177815-UTR-Ecto-sp9_F_contig957:8425..86881692279005.7177815-UTR-Ecto-sp9_F_contig957:8425..8688Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig957 8426..8688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.6260998-CDS-Ecto-sp9_F_contig957:8688..89281622931042.6260998-CDS-Ecto-sp9_F_contig957:8688..8928Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 8689..8928 -
1692279005.7331598-CDS-Ecto-sp9_F_contig957:8688..89281692279005.7331598-CDS-Ecto-sp9_F_contig957:8688..8928Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 8689..8928 -
1622931042.6416917-CDS-Ecto-sp9_F_contig957:9552..99211622931042.6416917-CDS-Ecto-sp9_F_contig957:9552..9921Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 9553..9921 -
1692279005.7420788-CDS-Ecto-sp9_F_contig957:9552..99211692279005.7420788-CDS-Ecto-sp9_F_contig957:9552..9921Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 9553..9921 -
1622931042.6603355-CDS-Ecto-sp9_F_contig957:10258..104411622931042.6603355-CDS-Ecto-sp9_F_contig957:10258..10441Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 10259..10441 -
1692279005.753367-CDS-Ecto-sp9_F_contig957:10258..104411692279005.753367-CDS-Ecto-sp9_F_contig957:10258..10441Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 10259..10441 -
1622931042.6790483-CDS-Ecto-sp9_F_contig957:10641..112471622931042.6790483-CDS-Ecto-sp9_F_contig957:10641..11247Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 10642..11247 -
1692279005.7619662-CDS-Ecto-sp9_F_contig957:10641..112471692279005.7619662-CDS-Ecto-sp9_F_contig957:10641..11247Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 10642..11247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig957.17688.1

>prot_Ecto-sp9_F_contig957.17688.1 ID=prot_Ecto-sp9_F_contig957.17688.1|Name=mRNA_Ecto-sp9_F_contig957.17688.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=466bp
MFLTGNSARSLMVGVGRAPGFASSLVRCSGAHNAWLTPKEANLRSLATVA
ERRRGGSRGRGDGHAGRGPVARAKRTGRTQHRNADAPRFQPFGRAGGEGS
KVAERLYEDFGINSLKKYSPEATDERKRVLTWLEGTVRMSSRAIADMVEQ
EPRIAEQETGAISARLAWLKERLRLSDEQIRSLVHRRPSVLCRSVDDSME
PKVQWLQEKLGLSADEVATMVSSAPNVLTISIEGSMAPKLDWLSRRLILS
NEELAAVVTTCPQVLTSSIEGALEPRLRWLHTNLQIGASVLRERVLSYPW
LLNLSEKDKLVPTFDFLKTELLLDEAEIRKTLFRNPRMFLTPMRQTFDST
KKWLCTSVGLGEEEAVKVLTKDARLLLRSTEVLDTKVAFFCQEMGATLED
VRAVLMTSPNFLLVSIDLMLAPRVAALKDAGVEVSFSAHWNDLAFGPRGE
AFDFWVRRQASRSRR*
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mRNA from alignment at Ecto-sp9_F_contig957:8426..11247-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig957.17688.1 ID=mRNA_Ecto-sp9_F_contig957.17688.1|Name=mRNA_Ecto-sp9_F_contig957.17688.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2822bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:8426..11247- (Ectocarpus species9 EcSCA_722f female)
ATGTTTTTGACCGGAAACAGCGCGCGGAGTTTGATGGTGGGGGTGGGGCG
AGCGCCCGGGTTTGCCAGCTCGCTAGTCCGATGCAGTGGTGCGCACAACG
CTTGGCTCACACCGAAAGAAGCCAACTTACGGTCATTGGCCACCGTCGCG
GAGAGGCGAAGGGGTGGCAGCCGTGGACGGGGTGATGGGCATGCGGGGAG
AGGCCCCGTCGCGCGGGCGAAACGCACGGGGCGCACACAGCATAGGAACG
CCGATGCTCCTCGGTTCCAGCCTTTCGGGCGCGCGGGTGGAGAGGGGTCC
AAGGTCGCCGAGAGACTCTACGAAGATTTTGGCATAAACAGCCTGAAGAA
GTACTCCCCCGAGGCGACGGACGAGCGGAAGAGAGTCCTTACATGGCTCG
AAGGGACAGTCAGGATGAGCTCCCGGGCTATCGCGGATATGGTGGAGCAA
GAGCCGCGCATTGCGGAGCAAGAGACCGGCGCGATATCCGCGAGGCTGGC
GTGGCTGAAAGAGAGACTGCGGCTCAGCGACGAGCAGATCAGGAGCCTGG
TGCACAGGAGGCCGTCCGTACTATGCCGGAGCGTTGACGATAGCATGGAA
CCCAAGGTGCAGCAGCGATTGATACGCATTCGATGCTGCGGCCGTCGCAC
AGGGTTCTGCGCGTAACGCGGGCTGGCCTCTCTCTCACCCGTCCTACTCG
TATTTAGTGACCAGCTTTGCATTTTTCAGCCGACGTTGATTAACACCTGC
AATCATTATGATGTTGTGTCCACTCCGTTGCGTTCACTCTTGGTTGTTTC
CCCAAGGTTCAATGGCTCCAAGAGAAACTAGGCCTGAGTGCAGACGAGGT
GGCGACAATGGTATCCTCCGCACCAAACGTCCTAACCATCAGCATCGAAG
GCAGCATGGCACCCAAGCTAGACTGGCTCTCCCGGCGGCTGATACTCTCC
AACGAAGAGCTGGCTGCGGTAGTGACCACGTGTCCTCAAGTGAGTAGCGC
GATGAGCTCGAGAATGCGCAAAGACTGTTCTCAATAGGATGTATTTTGTT
CACAGCGTATATGGTTCCGGTCACATTTGGGCTTGGTTGCTTGGCTGCGT
GGTTTCATTGGATGATGGAGCATGCGGGGGAATACATACAATGTATGAAG
AATTGCAACCGCGCGTTCAGCGGACTTGAGATATGCGTTTCCCAATTTGC
GCCATACACCCCCCCTTTTCAACCAACGGAGCATCCACCTGATCGTCTAT
GGCGGATCTCCCGTCCTTCATTCTCTTCTGAGGCGAGCTGTGTTGCTCCC
GTTTGCTCCGACGGCCTCTGCCGCAGGTGTTGACCAGTAGCATCGAGGGC
GCGCTCGAGCCAAGGCTAAGGTGGCTCCACACAAACCTGCAGATCGGCGC
GTCTGTCCTACGGGAGAGGGTGCTAAGCTATCCCTGGCTGCTGAACCTCA
GTGAGAAGGACAAATTAGTGCCGACGTTCGACTTCCTGAAGACGGAACTC
CTCCTCGACGAGGCCGAAATCAGGAAGACCCTCTTTCGAAACCCGCGCAT
GTTCCTGACTCCGATGAGGCAAACGTTCGACTCAACGAAGAAGTGGCTTT
GTACAAGCGTAGGGCTGGGGGAGGAGGAGGCGGTGAAGGTGCTGACAAAG
GATGCGCGACTGCTGCTGCGGAGCACGGAAGTTCTGGACACCAAGGTTTG
ATCACTACCTGCCCCGTGAATGTTTATGAACGCTATTACGCTCTGAGAAG
GTTTCGACTGAAGTTTTTTCTATGGACAGATTTCCACGCCGCAGGCTCGA
GTGATTTAGTATGCACGTATGCATCGAGTGGATTCGCCTTATTTCCAAAA
CGTTCTCCTCATCTTTCTTCCGACGATTTCGCACTTGGAGTGGTCACCAC
GGGGTGGACCTGGCATTGACACGAGAAATCGCCTCGGGGCTGTAGCTCAA
GAAGCGGGTGATCGGACACCACAGTGACGTACCCGGCGGGCGTTGTTCTC
AAAAGCCGCCTTTTTGATACCGCCAGGCGCGCAGCAGCCCCAACGTAAAA
CAGTACCCGTGAGCTCACGAAGTCTCATGTGCTTCCGGAGTGCTTGAGAC
GCATTCACCATTGTGATTGTTCTGGTTTTGGCACCGCACATGGTTTAATT
TAATCGCTCTGCCTGTTCGAGCCATAAGATGCACCAACGAATGTACGAGT
GCACAGCACAAACGGAACCGTACATCATACTCTTGGACGCCTGCTGTAGA
ACGTTGGCTTACTACGCCTGTGCGCCGTTTCATGCTTTTCTGTCCTTCTG
ATCCCCACGTCGTGTTCAGGTGGCCTTTTTTTGCCAAGAGATGGGTGCCA
CCCTGGAGGACGTTCGGGCCGTGCTAATGACGAGCCCAAACTTCCTGCTC
GTAAGCATAGACCTGATGCTGGCGCCACGGGTGGCGGCATTGAAAGATGC
CGGGGTAGAAGTTTCGTTTTCGGCGCATTGGAATGACCTCGCGTTCGGCC
CTCGAGGAGAGGCGTTTGATTTCTGGGTGAGAAGGCAAGCTAGCAGGTCA
CGCAGATAGAACAGAGCGTGGATGTTGTTACGAAGTCAGCACCAAATAGT
CGTTTTTGCTCTTCCCGTGCATGCGAAAGCTGCCGTGCGACCCTCGAGGA
GACCTACCGGAGAAGTCAAGCAGTGTACGAATTGGGCACATCACGTAGAT
TTGAAACAAGTAAATAAAGCCGTTCACAGGTTGGTTTGTCTGGAGCTAAT
TCTACGACAGCGCAGTGCTTCTTCTGGTCGGCGTGGACTCTGAGTATGCA
ACAGAACACGACATTCAGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig957:8426..11247-

>mRNA_Ecto-sp9_F_contig957.17688.1 ID=mRNA_Ecto-sp9_F_contig957.17688.1|Name=mRNA_Ecto-sp9_F_contig957.17688.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2796bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:8426..11247- (Ectocarpus species9 EcSCA_722f female)
ATGTTTTTGACCGGAAACAGCGCGCGGAGTTTGATGGTGGGGGTGGGGCG
AGCGCCCGGGTTTGCCAGCTCGCTAGTCCGATGCAGTGGTGCGCACAACG
CTTGGCTCACACCGAAAGAAGCCAACTTACGGTCATTGGCCACCGTCGCG
GAGAGGCGAAGGGGTGGCAGCCGTGGACGGGGTGATGGGCATGCGGGGAG
AGGCCCCGTCGCGCGGGCGAAACGCACGGGGCGCACACAGCATAGGAACG
CCGATGCTCCTCGGTTCCAGCCTTTCGGGCGCGCGGGTGGAGAGGGGTCC
AAGGTCGCCGAGAGACTCTACGAAGATTTTGGCATAAACAGCCTGAAGAA
GTACTCCCCCGAGGCGACGGACGAGCGGAAGAGAGTCCTTACATGGCTCG
AAGGGACAGTCAGGATGAGCTCCCGGGCTATCGCGGATATGGTGGAGCAA
GAGCCGCGCATTGCGGAGCAAGAGACCGGCGCGATATCCGCGAGGCTGGC
GTGGCTGAAAGAGAGACTGCGGCTCAGCGACGAGCAGATCAGGAGCCTGG
TGCACAGGAGGCCGTCCGTACTATGCCGGAGCGTTGACGATAGCATGGAA
CCCAAGATGTTTTTGACCGGAAACAGCGCGCGGAGTTTGATGGTGGGGGT
GGGGCGAGCGCCCGGGTTTGCCAGCTCGCTAGTCCGATGCAGTGGTGCGC
ACAACGCTTGGCTCACACCGAAAGAAGCCAACTTACGGTCATTGGCCACC
GTCGCGGAGAGGCGAAGGGGTGGCAGCCGTGGACGGGGTGATGGGCATGC
GGGGAGAGGCCCCGTCGCGCGGGCGAAACGCACGGGGCGCACACAGCATA
GGAACGCCGATGCTCCTCGGTTCCAGCCTTTCGGGCGCGCGGGTGGAGAG
GGGTCCAAGGTCGCCGAGAGACTCTACGAAGATTTTGGCATAAACAGCCT
GAAGAAGTACTCCCCCGAGGCGACGGACGAGCGGAAGAGAGTCCTTACAT
GGCTCGAAGGGACAGTCAGGATGAGCTCCCGGGCTATCGCGGATATGGTG
GAGCAAGAGCCGCGCATTGCGGAGCAAGAGACCGGCGCGATATCCGCGAG
GCTGGCGTGGCTGAAAGAGAGACTGCGGCTCAGCGACGAGCAGATCAGGA
GCCTGGTGCACAGGAGGCCGTCCGTACTATGCCGGAGCGTTGACGATAGC
ATGGAACCCAAGGTTCAATGGCTCCAAGAGAAACTAGGCCTGAGTGCAGA
CGAGGTGGCGACAATGGTATCCTCCGCACCAAACGTCCTAACCATCAGCA
TCGAAGGCAGCATGGCACCCAAGCTAGACTGGCTCTCCCGGCGGCTGATA
CTCTCCAACGAAGAGCTGGCTGCGGTAGTGACCACGTGTCCTCAAGTTCA
ATGGCTCCAAGAGAAACTAGGCCTGAGTGCAGACGAGGTGGCGACAATGG
TATCCTCCGCACCAAACGTCCTAACCATCAGCATCGAAGGCAGCATGGCA
CCCAAGCTAGACTGGCTCTCCCGGCGGCTGATACTCTCCAACGAAGAGCT
GGCTGCGGTAGTGACCACGTGTCCTCAAGTGTTGACCAGTAGCATCGAGG
GCGCGCTCGAGCCAAGGCTAAGGTGGCTCCACACAAACCTGCAGATCGGC
GCGTCTGTCCTACGGGAGAGGGTGCTAAGCTATCCCTGGCTGCTGAACCT
CAGTGAGAAGGACAAATTAGTGCCGACGTTCGACTTCCTGAAGACGGAAC
TCCTCCTCGACGAGGCCGAAATCAGGAAGACCCTCTTTCGAAACCCGCGC
ATGTTCCTGACTCCGATGAGGCAAACGTTCGACTCAACGAAGAAGTGGCT
TTGTACAAGCGTAGGGCTGGGGGAGGAGGAGGCGGTGAAGGTGCTGACAA
AGGATGCGCGACTGCTGCTGCGGAGCACGGAAGTTCTGGACACCAAGGTG
TTGACCAGTAGCATCGAGGGCGCGCTCGAGCCAAGGCTAAGGTGGCTCCA
CACAAACCTGCAGATCGGCGCGTCTGTCCTACGGGAGAGGGTGCTAAGCT
ATCCCTGGCTGCTGAACCTCAGTGAGAAGGACAAATTAGTGCCGACGTTC
GACTTCCTGAAGACGGAACTCCTCCTCGACGAGGCCGAAATCAGGAAGAC
CCTCTTTCGAAACCCGCGCATGTTCCTGACTCCGATGAGGCAAACGTTCG
ACTCAACGAAGAAGTGGCTTTGTACAAGCGTAGGGCTGGGGGAGGAGGAG
GCGGTGAAGGTGCTGACAAAGGATGCGCGACTGCTGCTGCGGAGCACGGA
AGTTCTGGACACCAAGGTGGCCTTTTTTTGCCAAGAGATGGGTGCCACCC
TGGAGGACGTTCGGGCCGTGCTAATGACGAGCCCAAACTTCCTGCTCGTA
AGCATAGACCTGATGCTGGCGCCACGGGTGGCGGCATTGAAAGATGCCGG
GGTAGAAGTTTCGTTTTCGGCGCATTGGAATGACCTCGCGTTCGGCCCTC
GAGGAGAGGCGTTTGATTTCTGGGTGAGAAGGCAAGCTAGCAGGTCACGC
AGATAGGTGGCCTTTTTTTGCCAAGAGATGGGTGCCACCCTGGAGGACGT
TCGGGCCGTGCTAATGACGAGCCCAAACTTCCTGCTCGTAAGCATAGACC
TGATGCTGGCGCCACGGGTGGCGGCATTGAAAGATGCCGGGGTAGAAGTT
TCGTTTTCGGCGCATTGGAATGACCTCGCGTTCGGCCCTCGAGGAGAGGC
GTTTGATTTCTGGGTGAGAAGGCAAGCTAGCAGGTCACGCAGATAG
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