mRNA_Ecto-sp9_F_contig9569.17687.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9569.17687.1
Unique NamemRNA_Ecto-sp9_F_contig9569.17687.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.990e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 114
            LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR
Sbjct:  759 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 796
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F4S6_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 7.970e-8
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 114
            LD  LFLIKHLLTLREQ+ PF   FV+ +Q L+F STR
Sbjct:   12 LDGLLFLIKHLLTLREQIAPFDADFVYNQQSLDFNSTR 49
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY61_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.790e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 111
            LD  LFL+KHLL +REQLTPF IQF+  E+KL+F  T
Sbjct:    5 LDGNLFLVKHLLVMREQLTPFDIQFLAVEKKLDFTGT 41
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLN9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    4 DAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 114
            D  LFLIKHLLTLREQLTPF I F   +++L+F STR
Sbjct:   71 DGDLFLIKHLLTLREQLTPFDINFSQLKRRLDFSSTR 107
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 111
            LD  LFL+KHLLTLREQL PF I F+  ++KLNF +T
Sbjct:  817 LDGHLFLVKHLLTLREQLEPFDISFMRNDRKLNFSTT 853
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 114
            +DA LFL+KHLL LREQL PF I+F   E++L+F STR
Sbjct:  161 MDADLFLVKHLLILREQLVPFDIEFAAIEKRLDFNSTR 198
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRW2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.160e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 111
            LD  LFLIKHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  526 LDGGLFLIKHLLTLRERITPFDIQFAVTEKNLDFSST 562
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FKD5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 111
            LD  LFLIKHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  341 LDGGLFLIKHLLTLRERITPFDIQFAVTEKNLDFSST 377
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F0J7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 111
            LD  LFLIKHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  357 LDGGLFLIKHLLTLRERITPFDIQFAVTEKNLDFSST 393
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BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLI5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.330e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 111
            LD  LFL+KHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  522 LDGGLFLVKHLLTLRERITPFDIQFAVTEKNLDFSST 558
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Conserved9.990e-16100.00oligomeric Golgi complex subunit 3 n=1 Tax=Ectocar... [more]
Conserved7.970e-865.79oligomeric Golgi complex subunit 3 (Fragment) n=1 ... [more]
Conserved3.790e-764.86oligomeric Golgi complex subunit 3 (Fragment) n=1 ... [more]
Conserved1.240e-667.57oligomeric Golgi complex subunit 3 n=2 Tax=Rhizoch... [more]
Conserved1.690e-664.86oligomeric Golgi complex subunit 3 n=1 Tax=Tribone... [more]
Conserved1.700e-663.16oligomeric Golgi complex subunit 3 n=1 Tax=Nannoch... [more]
Conserved3.160e-667.57oligomeric Golgi complex subunit 3 n=1 Tax=Aphanom... [more]
Conserved3.180e-667.57oligomeric Golgi complex subunit 3 n=2 Tax=Aphanom... [more]
Conserved3.180e-667.57oligomeric Golgi complex subunit 3 n=1 Tax=Aphanom... [more]
Conserved4.330e-664.86oligomeric Golgi complex subunit 3 n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9569contigEcto-sp9_F_contig9569:3668..3781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D7G064
Preferred nameCOG3
KEGG koko:K20290
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2604@1,KOG2604@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.3901525-CDS-Ecto-sp9_F_contig9569:3667..37811622931042.3901525-CDS-Ecto-sp9_F_contig9569:3667..3781Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9569 3668..3781 +
1692279005.5988789-CDS-Ecto-sp9_F_contig9569:3667..37811692279005.5988789-CDS-Ecto-sp9_F_contig9569:3667..3781Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9569 3668..3781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9569.17687.1prot_Ecto-sp9_F_contig9569.17687.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9569 3668..3781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9569.17687.1

>prot_Ecto-sp9_F_contig9569.17687.1 ID=prot_Ecto-sp9_F_contig9569.17687.1|Name=mRNA_Ecto-sp9_F_contig9569.17687.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=38bp
LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR
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mRNA from alignment at Ecto-sp9_F_contig9569:3668..3781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9569.17687.1 ID=mRNA_Ecto-sp9_F_contig9569.17687.1|Name=mRNA_Ecto-sp9_F_contig9569.17687.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9569:3668..3781+ (Ectocarpus species9 EcSCA_722f female)
CTCGACGCCCAGCTGTTCCTGATCAAGCACCTGCTGACGCTGAGGGAGCA
GCTGACGCCGTTCCACATACAGTTCGTGCACGCGGAGCAAAAGCTCAACT
TTGGGTCGACAAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9569:3668..3781+

>mRNA_Ecto-sp9_F_contig9569.17687.1 ID=mRNA_Ecto-sp9_F_contig9569.17687.1|Name=mRNA_Ecto-sp9_F_contig9569.17687.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9569:3668..3781+ (Ectocarpus species9 EcSCA_722f female)
CTCGACGCCCAGCTGTTCCTGATCAAGCACCTGCTGACGCTGAGGGAGCA
GCTGACGCCGTTCCACATACAGTTCGTGCACGCGGAGCAAAAGCTCAACT
TTGGGTCGACAAGGCTCGACGCCCAGCTGTTCCTGATCAAGCACCTGCTG
ACGCTGAGGGAGCAGCTGACGCCGTTCCACATACAGTTCGTGCACGCGGA
GCAAAAGCTCAACTTTGGGTCGACAAGG
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