mRNA_Ecto-sp9_F_contig9558.17676.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV1_ECTSI) HSP 1 Score: 569 bits (1466), Expect = 3.570e-202 Identity = 284/288 (98.61%), Postives = 286/288 (99.31%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEEGAGDY 864
GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPV SNGAISSLEDVERCLRETGCDGVMSSE VLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLE+MEE+ALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEEGAGDY
Sbjct: 174 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVFSNGAISSLEDVERCLRETGCDGVMSSEGVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEEMEELALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEEGAGDY 461
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dihydrouridine (synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDH4_9STRA) HSP 1 Score: 235 bits (599), Expect = 2.110e-71 Identity = 130/287 (45.30%), Postives = 179/287 (62.37%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDE----EKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEE 849
GCPQGIARKG+YGAFLL + L+ IVSTL++ L PVTCK+RLL + +T+ +C+ LV AG ++TVHGRTKEQ C+W+AIR+IK A+PVPV +NG I+ L+DVE+CL T DGVMSSEA+LE PGLFS NV+ VTG + +Q D+ EY++LA Q PP + C+R H+FK +FT V + DLR L A +++M V +R L + D E++WY RH +D+ Q + ++R + G E G+G +FG E+
Sbjct: 148 GCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELDKPVTCKIRLLPTFSETLALCQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPVPVFANGGIADLDDVEKCLSFTKVDGVMSSEALLENPGLFSRNVNVVTGHRANQLDLAEEYLELAAQHPPDR-----LKCVRAHVFKLVFTGVQLFEDLRDALVAAENVKEMRWVVGEIRRRALERAQGRDVGSAGERSWYWRHWHKGVTDKGSE----LPRQGKEGGKRRGEEGGVESEGMG-CLFGAED 424
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D994_9STRA) HSP 1 Score: 230 bits (586), Expect = 1.710e-70 Identity = 128/287 (44.60%), Postives = 178/287 (62.02%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDE----EKTWYRRHTMPHTSDEWGTPQALWAAQAEVVAEKRLRDPGPEEVGLGDSIFGEEE 849
GCPQGIARKG+YGAFLL + L+ IVSTL++ L+ PVTCK+RLL + +T+ + + LV AG ++TVHGRTKEQ C+W+AIR+IK A+P+PV +NG I+ L+DVE+CL T DGVMSSEA+LE PGLFS NV+ VTG + +Q D+ EY++LA Q PP + C+R H+FK +FT V + DLR L A +++M V +R L + D E++WY RH +D Q + ++R + G E G+G +FG E+
Sbjct: 63 GCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELNKPVTCKIRLLPTFSETLALSQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPIPVFANGGIADLDDVEKCLSFTEVDGVMSSEALLENPGLFSRNVNVVTGHRANQLDLAEEYLELAAQHPPDR-----LKCVRAHVFKLVFTGVQLFEDLRDALVAAENVKEMRWVVGEIRRRALERAQGRDVGSAGERSWYWRHWHKGETDRGSE----LPRQGKGGGKRRGEEGGVESEGMG-CLFGAED 339
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Putative (tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z1_9STRA) HSP 1 Score: 219 bits (557), Expect = 2.310e-66 Identity = 115/215 (53.49%), Postives = 146/215 (67.91%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLL-DSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALA 642
GCPQ IAR+GRYGAFLLEEW LL+D+V + + +PVTCKVRLL +SVEDTI +CK+LV AGA ++TVHGRT+ Q CNWDAIRRI+EA+PVPV +NG I +ED E CLR TG GVM SE VL P F+ N G+ + + + EY+ LA++ PP R LRGH+FK LFTA++ DLR L + +LED+E V+ A
Sbjct: 110 GCPQNIARRGRYGAFLLEEWDLLQDMVWAMHCSAKVPVTCKVRLLQESVEDTIELCKLLVGAGAAMLTVHGRTRMQVGCLAGVCNWDAIRRIREAVPVPVFANGGIGCIEDFEECLRVTGAAGVMVSEVVLSNPAFFAPNAPGPCGVAPTSESMCREYLALARRFPPK---RYVSGILRGHVFKLLFTALSRCEDLRPVLAVSHSLEDVERVSRA 321
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW03_9STRA) HSP 1 Score: 219 bits (558), Expect = 7.410e-66 Identity = 110/236 (46.61%), Postives = 153/236 (64.83%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPESFDEEKTWYRRH 708
GCPQGIA+KGRYGAFL+ E ++R IV L+ NLS+PV+CK+RLL EDT+ C ML+ AG + VHGRTKE C+W I R+K+ LP+PV +NG I + +DV RC+ ET +GVMSSEA+LERP LF+ + G ++ Q D+ +EY++LAKQ PP + LR H+FK LF + V TDLR + A+T +++ + + ++ + A P F E +WYRRH
Sbjct: 117 GCPQGIAKKGRYGAFLMHEPEVVRSIVEKLSANLSVPVSCKIRLLPKYEDTLAFCNMLIDAGCCWLVVHGRTKEMNKHLVRECDWATIARLKKELPIPVFANGGIETDDDVVRCMEETNVEGVMSSEAILERPALFAGDKDK-DGQRIRQIDLAMEYMELAKQFPPPEK------FLRAHLFKILFQDLKVHTDLREQTGLAQTHDELLAICVELKSRQEAAPVPFTTEDSWYRRH 345
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEX3_9STRA) HSP 1 Score: 217 bits (553), Expect = 9.090e-65 Identity = 116/238 (48.74%), Postives = 155/238 (65.13%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARL--ADPESFDEEKTWYRRH 708
GCPQGIA+KGRYGAFL+ E ++R IVS L+ NLS+PVTCK+RLL EDT+ C ML+ AG + VHGRTKE C+WD+I R+K+ALP+PV +NG I + +DV RC+ ETG +GVMSSE +LERP LF+ N G+ + Q D+ +EY+ LAK PP + LR H+FK LF + V TDLR ++ A+T + + + ++ ARL A P E +WYRRH
Sbjct: 145 GCPQGIAKKGRYGAFLMHEPDVVRSIVSKLSSNLSVPVTCKIRLLPKYEDTLAFCNMLIDAGCCWLVVHGRTKEMNKHLVRECDWDSIARLKKALPIPVFANGGIETDDDVVRCMLETGVNGVMSSEGILERPALFA-NDRDKHGVPIRQIDVAIEYLQLAKTFPPPEK------FLRAHLFKILFQELKVHTDLREQIGLAQTHDVLWAITKELK-ARLDAAAPVPTSVEGSWYRRH 374
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9A1_9STRA) HSP 1 Score: 215 bits (547), Expect = 2.710e-64 Identity = 108/240 (45.00%), Postives = 155/240 (64.58%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPE----SFDEEKTWYRRH 708
GCPQGIARKGRYGAFL+ E ++R+IVSTL+ NL +PV+CK+RLL EDT+ C MLV AG + +HGRTKE + C+W++IRR+++ LP+PV +NG I +++DV+ CL T +GVMSSE +LE P LF+ N VT + Q D+ LEY+D A + PP + +R H+FK LF + TDLR + A++ +++ ++ L + RL P+ + E +WYRRH
Sbjct: 109 GCPQGIARKGRYGAFLMHEPDVVREIVSTLSTNLKVPVSCKIRLLPKYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWESIRRLRKELPIPVFANGGIENVDDVKACLEATEAEGVMSSEGILEWPALFTGNKDPVTQKPLRQVDVALEYLDWAAKYPPPEK------FIRAHLFKLLFQELKAFTDLREAIGVAQSHKELLDITLEAKR-RLESPDYPTIPYSIEDSWYRRH 341
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D039_SAPPC) HSP 1 Score: 211 bits (538), Expect = 1.280e-62 Identity = 109/240 (45.42%), Postives = 155/240 (64.58%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPES----FDEEKTWYRRH 708
GCPQGIARKGRYGAFL+ E ++R+IVSTL++ L++PV+CK+RLL EDT+ C MLV AG + +HGRTKE + C+WD+I+R+++ LP+PV +NG I + EDV CL T +GVMSSE +LE P LF+ N TG +SQ D+ LEY+ A + PP + LR H+FK LF + V TDLR + + +T ++ + + ++ ARL P++ + +WYRRH
Sbjct: 137 GCPQGIARKGRYGAFLMHEPDVVREIVSTLSRELTVPVSCKIRLLPDYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDSIKRLRKELPIPVFANGGIENDEDVAACLAATEAEGVMSSEGILEFPALFTGNKDPTTGEIVSQIDLALEYMAWAAKFPPPEK------FLRAHLFKMLFQELKVFTDLREAIGQGQTHAELLAIVVEMK-ARLDAPDAPVIPYSTADSWYRRH 369
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: Dus (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU30_PYTIN) HSP 1 Score: 210 bits (535), Expect = 3.500e-62 Identity = 111/240 (46.25%), Postives = 152/240 (63.33%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLAD----PESFDEEKTWYRRH 708
GCPQGIARKGRYG+FL++E ++R IVSTL++NLSIPVT K+R+ ++T+ C ML +AG ++ VHGRTKE A +WD IR IK+ L +PV++NG I EDV+RCL TGCDGVMSSEA+LE P LF + S ++ +Y+D A++ PP S ++ H+FK LF + V TDLR L K+ +DM + +A +ARL+ P + E +WYRRH
Sbjct: 141 GCPQGIARKGRYGSFLMKEKDVVRSIVSTLSENLSIPVTVKIRVFPDRQETLEFCDMLQSAGCDLLVVHGRTKEMNKTAVREVDWDIIREIKQRLTIPVLANGGIEVPEDVDRCLEATGCDGVMSSEAILENPALFGSE-------RPSFMEMAKQYLDFAREYPPASE-----KIIKAHLFKILFQDLRVHTDLRTELAKSPNRDDMARI-VAELDARLSSDAFPPVVYSAETSWYRRH 367
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZQY0_9STRA) HSP 1 Score: 208 bits (529), Expect = 2.970e-61 Identity = 105/240 (43.75%), Postives = 153/240 (63.75%), Query Frame = 1
Query: 1 GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNWDAIRRIKEALPVPVVSNGAISSLEDVERCLRETGCDGVMSSEAVLERPGLFSDNVSTVTGLKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAVRTDLRARLTKARTLEDMEEVALAVREARLADPES----FDEEKTWYRRH 708
GCPQGIARKGRYGAFL+ E ++R+IV TL++ L++PV+CK+RL + EDT+ C MLV AG + +HGRTKE + C+WD I+R+++ LP+PV +NG I + DV CL T +GVMSSE +LE P LF+ N + TG+ +SQ D+ LEY+D A + PP + +R H+FK LF + V TDLR + + +T ++ + ++ RL P++ + +WYRRH
Sbjct: 139 GCPQGIARKGRYGAFLMHEPEVVREIVETLSRELTVPVSCKIRLFPNYEDTLAFCNMLVDAGCCWLVIHGRTKEMNKQLVRECDWDTIKRLRKELPIPVFANGGIENDADVVACLAATEAEGVMSSEGILECPALFTGNKNPFTGIPVSQIDLALEYMDWAAKFPPPEK------FIRAHLFKMLFQELKVFTDLREAIGQGQTHAELLAIVHEMK-VRLEAPDAPEIPYSVADSWYRRH 371 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9558.17676.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9558.17676.1 >prot_Ecto-sp9_F_contig9558.17676.1 ID=prot_Ecto-sp9_F_contig9558.17676.1|Name=mRNA_Ecto-sp9_F_contig9558.17676.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=289bp GCPQGIARKGRYGAFLLEEWALLRDIVSTLAKNLSIPVTCKVRLLDSVEDback to top mRNA from alignment at Ecto-sp9_F_contig9558:2051..5089- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9558.17676.1 ID=mRNA_Ecto-sp9_F_contig9558.17676.1|Name=mRNA_Ecto-sp9_F_contig9558.17676.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3039bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9558:2051..5089- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9558:2051..5089- >mRNA_Ecto-sp9_F_contig9558.17676.1 ID=mRNA_Ecto-sp9_F_contig9558.17676.1|Name=mRNA_Ecto-sp9_F_contig9558.17676.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1734bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9558:2051..5089- (Ectocarpus species9 EcSCA_722f female)back to top |